View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4369_high_2 (Length: 360)
Name: NF4369_high_2
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4369_high_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 34878824 - 34879175
Alignment:
| Q |
9 |
agcagagaggttggagaaaaaggagaacacctgtgatgttgactgggaaagttcattcttcatttggcatcgtccgacgtctaacattaggaaaattcca |
108 |
Q |
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| T |
34878824 |
agcaaagaggttggagaaaaaggagaacacctgtgatgttgactgggaaagttcattcttcatttggcatcgtccgacgtctaacattaggaaaattcca |
34878923 |
T |
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| Q |
109 |
aacctctctgaggatctttggttagtctattcaacgttaccaaacattgtgtttttcgctatttgcattttcgtatctttattattttaaactggagatg |
208 |
Q |
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| T |
34878924 |
aacctctctgaggatctttggttagtctattcaacgttaccaaacattgtgtttttcgctatttgcattttcgtatctttattattttaaaccggagctg |
34879023 |
T |
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| Q |
209 |
ttgttctaaccatatgtgtgtgtaaatgcagtcaaacaatggatgagtacattgacaaactagttcaagtggcagagacattatctcagatgatgagtga |
308 |
Q |
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| T |
34879024 |
ttgttctaacaatatgtgtgtgtaaatgcagtcaaacaatggatgagtacattgacaaactagttcaagtggcagagacattatctcagatgatgagtga |
34879123 |
T |
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| Q |
309 |
aaatcttggtttagagaaagattacataaagaaagcattttcaggaagtaat |
360 |
Q |
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| T |
34879124 |
aaatcttggtttggagaaagattacataaagaaagcattttcaggaaataat |
34879175 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 41810621 - 41810571
Alignment:
| Q |
146 |
taccaaacattgtgtttttcgctatttgcattttcgtatctttattatttt |
196 |
Q |
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| T |
41810621 |
taccaaacattgtgtgtttctctgtttgcattttcatatctttattctttt |
41810571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 26492831 - 26492771
Alignment:
| Q |
157 |
gtgtttttcgctatttgcattttcgtatctttattattttaaactggagatgttgttctaa |
217 |
Q |
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| T |
26492831 |
gtgtgtttctctattagcattttcgtatctttattcttttgaacttgagttgttgatctaa |
26492771 |
T |
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