View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4369_high_3 (Length: 356)
Name: NF4369_high_3
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4369_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 51261881 - 51261583
Alignment:
| Q |
20 |
aatatttagcataaacaaggggaaatcctgaaatgccatttataatttaaacatgatcttcgaataactagctaaccattggagtttgaaatttaagcta |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51261881 |
aatatttatcataaacaaggggaaatcctgaaatgccatttataatttaaacatgatcttcaaataactagctaaccattggagtttgaaatttaagcta |
51261782 |
T |
|
| Q |
120 |
tcaaagatgacaactataaattgccatatgatgctagacttcaagttggccctgagaattaggaaagctgataggaaaatatcaacacttatgtttcagt |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51261781 |
tcaaagatgacaagtataaattgccatatgatgctagacttcaagttggccctgagaattaggaaagctgataggaaaatatcaacacttatgtttcagt |
51261682 |
T |
|
| Q |
220 |
atttgtttgtgaatcccatatagattagacttgaatcaaattgatggtttttcga-----tctttaaccaattatttcccttgacactagagcatatac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51261681 |
atttgtttgtgaatcccatatagattagacttgaatcaaattgatggtttttcgaatctttctttaaccaattatttcccttgacactatagcatatac |
51261583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 51261911 - 51261883
Alignment:
| Q |
1 |
agtgtgtcttttaaactgaaatatttagc |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51261911 |
agtgtgtcttttaaactgaaatatttagc |
51261883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University