View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4369_low_1 (Length: 318)
Name: NF4369_low_1
Description: NF4369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4369_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 31560878 - 31561161
Alignment:
| Q |
15 |
tataaagtactatagaaggagaaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttc |
114 |
Q |
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| T |
31560878 |
tataaagtactatagaaggagtaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttc |
31560977 |
T |
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| Q |
115 |
aacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggatttt |
214 |
Q |
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| T |
31560978 |
aacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgcttt-ttttttctccgtcattactggatttt |
31561076 |
T |
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| Q |
215 |
ggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtac |
299 |
Q |
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| T |
31561077 |
ggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtac |
31561161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 295
Target Start/End: Original strand, 31558936 - 31559175
Alignment:
| Q |
50 |
gaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataattgaa |
149 |
Q |
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| T |
31558936 |
gaataatatagaagtaggttgtatcattgttcaagctacatatatatttttaggactcatttttcattttatgtcaaatgtatctctgtagataattgaa |
31559035 |
T |
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| Q |
150 |
tcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagttacagccct |
249 |
Q |
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| T |
31559036 |
ttggccttctattcttgaattatatttgt-----cttta-tttttccccatcattactggattttggctgtgcaaattattaaatatcagttacagccct |
31559129 |
T |
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| Q |
250 |
ccaacaaaagacgatattcactgtcgagaatctatcttcaacctat |
295 |
Q |
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| T |
31559130 |
ccaacagaagacaatattcactgtcgcggatctatcctcagcctat |
31559175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 31877754 - 31877560
Alignment:
| Q |
106 |
acatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcatta |
205 |
Q |
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| T |
31877754 |
acatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtcct-------tattttccccatcatta |
31877662 |
T |
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| Q |
206 |
ctggattttggcagtgtcaattactcaatatca--------gttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgt |
297 |
Q |
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| T |
31877661 |
atggattttggcagtgcaaattaatcagtatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgt |
31877562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 299
Target Start/End: Original strand, 31556020 - 31556169
Alignment:
| Q |
143 |
aattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagtta |
242 |
Q |
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| T |
31556020 |
aattgaattggcattctattcttgaattatatttgtc-----tttatttttcc--catcattactggattttggcagtgcaaattaatcagtatcagtta |
31556112 |
T |
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| Q |
243 |
cagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtac |
299 |
Q |
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| T |
31556113 |
cagccctccaactgaagacaatattcactgtcgcggatctattatcagcctatgtac |
31556169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 31555903 - 31556000
Alignment:
| Q |
45 |
aacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataa |
144 |
Q |
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| T |
31555903 |
aacaagaataatatagaagtaggttggatcattgttcaagctacatatata-ttttagaacacatt-------ttatgtcaattgtatctttgtagataa |
31555994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 31852320 - 31852379
Alignment:
| Q |
202 |
attactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagac |
261 |
Q |
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| T |
31852320 |
attactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagac |
31852379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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