View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4370-Insertion-1 (Length: 1104)

Name: NF4370-Insertion-1
Description: NF4370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4370-Insertion-1
NF4370-Insertion-1
[»] chr7 (9 HSPs)
chr7 (380-1015)||(32133798-32134438)
chr7 (8-292)||(32134527-32134811)
chr7 (517-558)||(40013268-40013309)
chr7 (517-577)||(40677022-40677082)
chr7 (516-558)||(38504606-38504648)
chr7 (516-558)||(46021514-46021556)
chr7 (516-558)||(47086383-47086425)
chr7 (533-574)||(2053087-2053128)
chr7 (533-574)||(2062945-2062986)
[»] chr6 (4 HSPs)
chr6 (516-557)||(28533444-28533485)
chr6 (517-559)||(9297761-9297803)
chr6 (517-558)||(9727499-9727540)
chr6 (517-558)||(16496735-16496776)
[»] chr2 (2 HSPs)
chr2 (517-558)||(7607323-7607364)
chr2 (519-556)||(499842-499879)
[»] chr1 (5 HSPs)
chr1 (517-558)||(10430422-10430463)
chr1 (516-559)||(4628046-4628089)
chr1 (516-563)||(7204586-7204633)
chr1 (516-558)||(45611544-45611586)
chr1 (517-558)||(270404-270445)
[»] chr5 (5 HSPs)
chr5 (516-558)||(8595570-8595612)
chr5 (517-558)||(21728665-21728706)
chr5 (517-558)||(23074727-23074768)
chr5 (517-558)||(28489187-28489228)
chr5 (519-556)||(42383137-42383174)
[»] chr4 (3 HSPs)
chr4 (516-558)||(24870600-24870642)
chr4 (516-558)||(46343332-46343374)
chr4 (516-558)||(50981781-50981823)
[»] chr3 (5 HSPs)
chr3 (516-558)||(10514551-10514593)
chr3 (516-558)||(11751215-11751257)
chr3 (516-557)||(7251623-7251664)
chr3 (517-558)||(28171062-28171103)
chr3 (517-558)||(40840173-40840214)
[»] scaffold1556 (1 HSPs)
scaffold1556 (533-574)||(716-757)
[»] chr8 (2 HSPs)
chr8 (517-558)||(25063344-25063385)
chr8 (517-558)||(27849825-27849866)


Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 380 - 1015
Target Start/End: Complemental strand, 32134438 - 32133798
Alignment:
Q  380 gagaggaagataatagtagttgaaaagggataatattttaattagaagcttcttctagaagctaatctagattttgccatggtatatgaagttttgttcc 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32134438 gagaggaagataatagtagttgaaaagggataatattttaattagaagcttcttctagaagctgatctagattttgccatggtatatgaagttttgttcc 32134339  T
Q  480 tttctttgtggttaaagtttaattacattaagaccctaagtcctagatcaattgacaaaaatgccgaaattgttaggccaaacacggtgaccgaggtttg 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32134338 tttctttgtggttaaagtttaattacattaagaccctaagtcctagatcaattgacaaaaatgccgaaattgttaggccagacacggtgaccgaggtttg 32134239  T
Q  580 aaactggtttatccactcgcatgtgtgtgagttttcaatggtgattgtcatttggtctttctnnnnnnnnnnggtttaattacaataccaaggtttgatg 679  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  32134238 aaactggtttctccagttgcatgtgtgtgagttttcaatggtgattgtcatttggtctttctaaaaaaaa--ggtttaattacaataccaaggtttgatg 32134141  T
Q  680 gagtttggtatagcagaaggggttagaccgtgtggcaaaccaaggttcaattctggtcaagagagaaaaccttgattgccagtcaaatattttacagttt 779  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  32134140 gagtttggtatagcagaaggggttagaccgtgtggcaaaccaaggttcaattctggtcgagagagaaaaccttgattgccagtcaaatattttacagatt 32134041  T
Q  780 cacacagtcggcatattcgtggtcgttggatcgagatagaacacttcaaattttaatgcaaatttccacatttagtgttcggcaatgccttgaatagtat 879  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32134040 cacacagtcggcatattcgtggtcattggatcgagatagaacacttcaaattttaatgcaaatttccacatttagtgttcggcaatgccttgaatagtat 32133941  T
Q  880 tacctctggttgagggaatttctt-gaaaagtgtttaatgactgat-ggtaaataatg-attcgagcaaactaggctgcatcgttggtccctagggg-at 975  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||| ||    
T  32133940 tacctctggttgagggaatttcttggaaaagtgtttaatgactgatgggtaaataatgaattcgagtaaactaggctgcatcgttggtcactaggggaat 32133841  T
Q  976 gaggtagcattgacatg--aatttgg-ttattttcttgtgata 1015  Q
    |||||||||||||||||  ||||||| ||||||||||||||||    
T  32133840 gaggtagcattgacatgaaaatttggtttattttcttgtgata 32133798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 32134811 - 32134527
Alignment:
Q  8 gtgaagaatagggatgaggtgtatgaacaggtggtggaagttgcgaataggaagaggaatttggaggaagatcaaaatgaattgagattcaatgattgtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32134811 gtgaagaatagggatgaggtgtatgaacaggtggtggaagttgcgaagaggaagaggaatttggaggaagatcaaaatgaattgagattcaatgattgtt 32134712  T
Q  108 gtaatgatgttgatgatttgttgttgcttcagcaaactccgtttacttctttgcttaatttttcgtctgagtttgatgttggtgttaagagaaatagtaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32134711 gtaatgatgttgatgatttgttgttgcttcagcaaactccgtttacttctttgcttaatttttcgtctgagtttgatgttggtgttaagagaaatagtaa 32134612  T
Q  208 tgattatggaaatgaatctggtcttcttctttgggatcgtaatccgtcgtatcaacctcctcaggtttgttaatgcgtgtttatg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32134611 tgattatggaaatgaatctggtcttcttctttgggatcgtaatccgtcgtatcaacctcctcaggtttgttaatgcgtttttatg 32134527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 40013268 - 40013309
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  40013268 aagtcctagctcaactgacaaaaatgccgaaattgttaggcc 40013309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 517 - 577
Target Start/End: Original strand, 40677022 - 40677082
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggccaaacacggtgaccgaggtt 577  Q
    ||||||||| ||||||| |||||||||| ||||||||||||| |||||  |||||| ||||    
T  40677022 aagtcctagttcaattggcaaaaatgccaaaattgttaggccgaacaccatgaccggggtt 40677082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 38504648 - 38504606
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||| ||||||| |||||||||||||||| |||||||    
T  38504648 taagtcctagctcaattggcaaaaatgccgaaatttttaggcc 38504606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 46021556 - 46021514
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||| |||| ||| |||||||||||||||||||||||    
T  46021556 taagtcctagctcaactgataaaaatgccgaaattgttaggcc 46021514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 47086425 - 47086383
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||| |||| ||||||||||| |||||||||||||||    
T  47086425 taagtcctagctcaactgacaaaaatgtcgaaattgttaggcc 47086383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 574
Target Start/End: Complemental strand, 2053128 - 2053087
Alignment:
Q  533 gacaaaaatgccgaaattgttaggccaaacacggtgaccgag 574  Q
    |||||| ||||||||||||||||||||||||  |||||||||    
T  2053128 gacaaatatgccgaaattgttaggccaaacattgtgaccgag 2053087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 574
Target Start/End: Complemental strand, 2062986 - 2062945
Alignment:
Q  533 gacaaaaatgccgaaattgttaggccaaacacggtgaccgag 574  Q
    |||||| ||||||||||||||||||||||||  |||||||||    
T  2062986 gacaaatatgccgaaattgttaggccaaacattgtgaccgag 2062945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 516 - 557
Target Start/End: Original strand, 28533444 - 28533485
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggc 557  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  28533444 taagtcctagttcaattggcaaaaatgccgaaattgttaggc 28533485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 9297761 - 9297803
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcca 559  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  9297761 aagtcctagttcaactgacaaaaatgtcgaaattgttaggcca 9297803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 9727499 - 9727540
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| ||||||||||| |||||||||||||||    
T  9727499 aagtcctagttcaactgacaaaaatgtcgaaattgttaggcc 9727540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 16496776 - 16496735
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  16496776 aagtcctagctcaactggcaaaaatgccgaaattgttaggcc 16496735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 7607364 - 7607323
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  7607364 aagtcctagctcaattgacaaaaatgtcgaaattgttaggcc 7607323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 499879 - 499842
Alignment:
Q  519 gtcctagatcaattgacaaaaatgccgaaattgttagg 556  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  499879 gtcctagttcaattggcaaaaatgccgaaattgttagg 499842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 10430463 - 10430422
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  10430463 aagtcctagctcaactgacaaaaatgccgaaattgttaggcc 10430422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 516 - 559
Target Start/End: Complemental strand, 4628089 - 4628046
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcca 559  Q
    |||||||||| |||| |||||||||||| |||||||||||||||    
T  4628089 taagtcctagctcaactgacaaaaatgctgaaattgttaggcca 4628046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 516 - 563
Target Start/End: Complemental strand, 7204633 - 7204586
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggccaaaca 563  Q
    |||||||||| |||| || |||||||||||||||||||||||| ||||    
T  7204633 taagtcctagctcaactggcaaaaatgccgaaattgttaggccgaaca 7204586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 45611586 - 45611544
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||| |||| |||| |||||||||||||||||||||||||||    
T  45611586 taagttctagctcaactgacaaaaatgccgaaattgttaggcc 45611544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 270445 - 270404
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  270445 aagtcctagctcaactggcaaaaatgccgaaattgttaggcc 270404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 8595612 - 8595570
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||| |||| || ||||||||||||||||||||||||    
T  8595612 taagtcctagctcaactggcaaaaatgccgaaattgttaggcc 8595570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 21728665 - 21728706
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  21728665 aagtcctagctcaactggcaaaaatgccgaaattgttaggcc 21728706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 23074768 - 23074727
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  23074768 aagtcctagctcaactggcaaaaatgccgaaattgttaggcc 23074727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 28489187 - 28489228
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| ||||||||||||||||||| |||||||    
T  28489187 aagtcctagttcaactgacaaaaatgccgaaattattaggcc 28489228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 42383174 - 42383137
Alignment:
Q  519 gtcctagatcaattgacaaaaatgccgaaattgttagg 556  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  42383174 gtcctagttcaattggcaaaaatgccgaaattgttagg 42383137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 24870600 - 24870642
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||| |||| || ||||||||||||||||||||||||    
T  24870600 taagtcctagctcaactggcaaaaatgccgaaattgttaggcc 24870642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 46343332 - 46343374
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||| |||| |||||||| ||||||||||||||||||    
T  46343332 taagtcctagctcaactgacaaaagtgccgaaattgttaggcc 46343374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 50981823 - 50981781
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||  |||| |||||||||||||||||||||||||||    
T  50981823 taagtcctaactcaactgacaaaaatgccgaaattgttaggcc 50981781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 10514551 - 10514593
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||| ||||  ||||||||||||||||||||||||||    
T  10514551 taagtcctagttcaacagacaaaaatgccgaaattgttaggcc 10514593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 11751215 - 11751257
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    |||||||||| |||| || ||||||||||||||||||||||||    
T  11751215 taagtcctagctcaactggcaaaaatgccgaaattgttaggcc 11751257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 516 - 557
Target Start/End: Complemental strand, 7251664 - 7251623
Alignment:
Q  516 taagtcctagatcaattgacaaaaatgccgaaattgttaggc 557  Q
    |||||||||  |||| ||||||||||||||||||||||||||    
T  7251664 taagtcctaactcaactgacaaaaatgccgaaattgttaggc 7251623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 28171103 - 28171062
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  28171103 aagtcctagctcaactggcaaaaatgccgaaattgttaggcc 28171062  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 40840173 - 40840214
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  40840173 aagtcctagctcaactggcaaaaatgccgaaattgttaggcc 40840214  T

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Target: scaffold1556 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold1556
Description:

Target: scaffold1556; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 574
Target Start/End: Complemental strand, 757 - 716
Alignment:
Q  533 gacaaaaatgccgaaattgttaggccaaacacggtgaccgag 574  Q
    |||||| ||||||||||||||||||||||||  |||||||||    
T  757 gacaaatatgccgaaattgttaggccaaacattgtgaccgag 716  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 25063344 - 25063385
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  25063344 aagtcctagttcaactggcaaaaatgccgaaattgttaggcc 25063385  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 27849866 - 27849825
Alignment:
Q  517 aagtcctagatcaattgacaaaaatgccgaaattgttaggcc 558  Q
    ||||||||  |||| |||||||||||||||||||||||||||    
T  27849866 aagtcctaactcaactgacaaaaatgccgaaattgttaggcc 27849825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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