View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4370-Insertion-2 (Length: 1026)

Name: NF4370-Insertion-2
Description: NF4370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4370-Insertion-2
NF4370-Insertion-2
[»] chr5 (13 HSPs)
chr5 (59-1026)||(36227429-36228399)
chr5 (623-737)||(29925767-29925881)
chr5 (623-736)||(16458009-16458121)
chr5 (627-734)||(25461681-25461787)
chr5 (8-61)||(36229705-36229758)
chr5 (670-750)||(42500302-42500382)
chr5 (623-700)||(16937913-16937990)
chr5 (619-684)||(17652240-17652305)
chr5 (623-736)||(25461019-25461131)
chr5 (623-700)||(34102344-34102421)
chr5 (645-717)||(14932236-14932307)
chr5 (677-736)||(15015778-15015837)
chr5 (688-737)||(7999132-7999181)
[»] chr2 (16 HSPs)
chr2 (623-737)||(32592513-32592626)
chr2 (623-727)||(43279559-43279661)
chr2 (627-709)||(24100880-24100963)
chr2 (623-735)||(20933683-20933795)
chr2 (623-735)||(26201956-26202068)
chr2 (655-713)||(42420356-42420414)
chr2 (623-735)||(23974522-23974632)
chr2 (623-729)||(12289730-12289837)
chr2 (667-713)||(1875076-1875122)
chr2 (624-709)||(39659540-39659625)
chr2 (688-736)||(15305584-15305632)
chr2 (623-710)||(11201412-11201499)
chr2 (623-729)||(12194885-12194992)
chr2 (623-713)||(4026767-4026857)
chr2 (630-700)||(39073726-39073796)
chr2 (623-684)||(40279176-40279237)
[»] chr3 (21 HSPs)
chr3 (626-735)||(12862281-12862389)
chr3 (623-712)||(49034293-49034382)
chr3 (623-736)||(20880404-20880516)
chr3 (672-736)||(51929439-51929504)
chr3 (626-734)||(30956659-30956767)
chr3 (626-734)||(30972471-30972579)
chr3 (623-735)||(39980657-39980769)
chr3 (623-734)||(36631081-36631192)
chr3 (630-735)||(5331222-5331326)
chr3 (630-735)||(29520516-29520620)
chr3 (622-737)||(18405860-18405976)
chr3 (649-737)||(20170449-20170537)
chr3 (623-713)||(901874-901964)
chr3 (623-701)||(36189528-36189606)
chr3 (623-664)||(36887503-36887544)
chr3 (672-736)||(35696187-35696251)
chr3 (688-737)||(1508675-1508725)
chr3 (623-737)||(13715602-13715718)
chr3 (639-713)||(24684869-24684943)
chr3 (623-685)||(47132309-47132371)
chr3 (623-684)||(30443872-30443933)
[»] chr4 (21 HSPs)
chr4 (632-736)||(31076425-31076529)
chr4 (623-735)||(54069447-54069559)
chr4 (627-722)||(44797827-44797922)
chr4 (623-750)||(54425958-54426083)
chr4 (672-735)||(43505884-43505947)
chr4 (623-734)||(50681119-50681230)
chr4 (623-737)||(33586985-33587098)
chr4 (638-750)||(42404043-42404155)
chr4 (623-713)||(21731686-21731773)
chr4 (623-702)||(39691173-39691252)
chr4 (644-735)||(41336689-41336779)
chr4 (623-713)||(11347728-11347818)
chr4 (623-733)||(15177232-15177342)
chr4 (623-713)||(17884018-17884108)
chr4 (668-734)||(25904285-25904351)
chr4 (617-737)||(40831053-40831179)
chr4 (672-737)||(403453-403518)
chr4 (623-712)||(9760391-9760480)
chr4 (667-735)||(45935294-45935362)
chr4 (623-713)||(46592239-46592330)
chr4 (623-684)||(53294144-53294205)
[»] chr7 (21 HSPs)
chr7 (623-734)||(420289-420400)
chr7 (623-734)||(38138509-38138620)
chr7 (624-737)||(48469970-48470083)
chr7 (623-735)||(31744237-31744349)
chr7 (630-735)||(45806514-45806619)
chr7 (623-734)||(4970823-4970929)
chr7 (623-728)||(45338384-45338488)
chr7 (688-737)||(48140142-48140191)
chr7 (677-729)||(45806410-45806462)
chr7 (667-730)||(31247602-31247665)
chr7 (623-725)||(19022615-19022717)
chr7 (669-736)||(20234408-20234477)
chr7 (693-735)||(21568728-21568770)
chr7 (690-731)||(31247666-31247707)
chr7 (623-684)||(43694600-43694661)
chr7 (623-684)||(46280302-46280363)
chr7 (688-735)||(23989579-23989626)
chr7 (644-722)||(19302610-19302688)
chr7 (667-737)||(46078073-46078143)
chr7 (623-712)||(20269527-20269616)
chr7 (688-729)||(45004700-45004741)
[»] chr6 (6 HSPs)
chr6 (630-735)||(18076124-18076229)
chr6 (672-736)||(30536637-30536701)
chr6 (623-734)||(8201162-8201273)
chr6 (667-736)||(30536405-30536474)
chr6 (644-736)||(24626222-24626314)
chr6 (623-736)||(31623487-31623600)
[»] chr1 (25 HSPs)
chr1 (617-737)||(18556853-18556972)
chr1 (623-713)||(41184680-41184770)
chr1 (623-736)||(42174784-42174895)
chr1 (651-736)||(42391293-42391377)
chr1 (669-728)||(45661185-45661244)
chr1 (638-736)||(14385808-14385906)
chr1 (623-684)||(3234045-3234106)
chr1 (623-735)||(44931962-44932074)
chr1 (623-750)||(17603414-17603544)
chr1 (623-713)||(33835484-33835574)
chr1 (623-713)||(33914038-33914128)
chr1 (667-713)||(45145176-45145222)
chr1 (705-750)||(32491466-32491511)
chr1 (623-735)||(1510340-1510451)
chr1 (620-735)||(27976523-27976639)
chr1 (638-734)||(37517239-37517335)
chr1 (625-684)||(6556950-6557009)
chr1 (623-726)||(47432033-47432135)
chr1 (623-729)||(33546483-33546589)
chr1 (623-713)||(34795455-34795545)
chr1 (644-713)||(836390-836459)
chr1 (654-723)||(5063403-5063472)
chr1 (623-737)||(11893122-11893238)
chr1 (690-735)||(37473327-37473372)
chr1 (644-713)||(38882962-38883030)
[»] chr8 (16 HSPs)
chr8 (623-750)||(16825567-16825694)
chr8 (619-737)||(12976139-12976257)
chr8 (639-737)||(38750284-38750382)
chr8 (623-728)||(6525753-6525857)
chr8 (667-737)||(35644055-35644125)
chr8 (671-735)||(14956373-14956437)
chr8 (688-736)||(32975987-32976035)
chr8 (644-735)||(42043396-42043487)
chr8 (667-734)||(12497305-12497372)
chr8 (623-713)||(16736034-16736124)
chr8 (623-700)||(37945560-37945636)
chr8 (688-737)||(38353276-38353324)
chr8 (638-734)||(10758301-10758397)
chr8 (617-660)||(28763371-28763414)
chr8 (629-750)||(25930590-25930712)
chr8 (688-737)||(1058169-1058218)


Alignment Details
Target: chr5 (Bit Score: 841; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 59 - 1026
Target Start/End: Complemental strand, 36228399 - 36227429
Alignment:
Q  59 gttatatggagtattttgacgatttatgcattataattgaaagacttaaatgatttataattaagttgtcaaaatgctccacaccaaggtgaacatgtca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36228399 gttatatggagtattttgacgatttatgcattataattgaaagacttaaatgatttataattaagttgtcaaaatgctccacaccaaggtgaacatgtca 36228300  T
Q  159 tttagtgtgacacctcaacaccgaacacccctaaaagacgaagataacagtttattgaccgatgttattttgtaaattcgaggtcccaaaatttggggat 258  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36228299 tttagtgtgacaccttaacaccgaacacccctaaacgacggagataacattttattgaccgatgttattttgtaaattcgaggtcccaaaatttggggat 36228200  T
Q  259 tcgttataacgttcatctccagtgcttggctgaacaatcaaaatttatcttagaaaggtttgtctaataattgtctccattaatgaagtattagttacat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36228199 tcgttataacgttcatctccagtgcttggctgaacaatcaaaatttatcttagaaaggtttgtctaataattgtctccattaatgaagtattagttacat 36228100  T
Q  359 tactcatttctcgtggacttcatcgatagttagattcatggtttattttcatatgcttcaatggtagaagtgtttgccaatagttccattcatgatttta 458  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36228099 tactcatttcacgtggacttcatcgatagttagattcatggtttattttcatatgcttcaatggtagaagtgtttgccaatagttccattcatgatttta 36228000  T
Q  459 ccgagcttaattccttgttaaacacttcaacttgtaactaagtgattggcctctgtcgttaatgagctgcaattaaggacaaatccttcaggacgaattg 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36227999 ccgagcttaattccttgttaaacacttcaacttgtaactaagtgattggcctctgtggttaatgagctgcaattaaggacaaatccttcaggacgaattg 36227900  T
Q  559 agttcaaacttttgaaaacagcttatgagttatgacaatttcataagnnnnnnnnnnnaacttatttcataagttcttcaatatggcttataaaaacaac 658  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||           |||||||||||||||||||||||||| |||||||||| ||||    
T  36227899 agttcaaacttttgaacacagcttatgagttatgacaatttcataagtttttttttttaacttatttcataagttcttcaatatagcttataaaagcaac 36227800  T
Q  659 ttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcggctgtgctataagttgatgat 758  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36227799 ttatattgtatacaaaatcaatttaacgctattttatcttttgctataaaaatagattaagcaagcttatacataagcggctgtgctataagttgatgat 36227700  T
Q  759 ccaaacactcccttaatgcttgtaatggttaagattct--tgtttattgttctcgtcaaattctttatatttagaaaaatgagatgattatcatgaactt 856  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36227699 ccaaacactcccttaatgcttgtaatggttaagattattgtgtttattgttctcgtcaaattctttatatttagaaaaatgagatgattatcatgaactt 36227600  T
Q  857 ctaaattgatgatctgcttattcatgtgagtgatgttcatctaactatgtctgtagcc-agaatgtgaatgtgttggttggttaataatgtctaagatat 955  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  36227599 ctaaattgatgatctgcttattcatgtgagtgatgttcatctaactatgtctgtagccaagaatgtgaatgtgttggttggttaataatgtctaagata- 36227501  T
Q  956 ttttatgatttcggaactttgattttcttgttctatgacccat-aaatg-tcagttctgaaataagaaaaaca 1026  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||    
T  36227500 ttttatgatttcggaactttgattttcttg-tctatgacgcataaaatgttcagttctgaaataagaaaaaca 36227429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 623 - 737
Target Start/End: Complemental strand, 29925881 - 29925767
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| |||||| ||||||  ||||||||||||    ||||| || |||||||| |||||||||||||||||||||||||||| ||| ||||    
T  29925881 tttcataagttctccaatatagcttatgtaaacaacttatagcacatacagaaacaatttaacgctattttatcttttgctataaaaatagcttatgcaa 29925782  T
Q  723 gcttatacataagcg 737  Q
    || ||||| ||||||    
T  29925781 gcatatacttaagcg 29925767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 623 - 736
Target Start/End: Original strand, 16458009 - 16458121
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||| ||||||| |||| | ||| ||||||||||||||||   ||||||||| |||||||| | |||||||||||||||||||||||||| ||| ||||    
T  16458009 tttcacaagttctccaatttagctcataaaaacaacttatagcatatacaaaaacaatttaa-gttattttatcttttgctataaaaatagcttatgcaa 16458107  T
Q  723 gcttatacataagc 736  Q
    ||||||| ||||||    
T  16458108 gcttatatataagc 16458121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 627 - 734
Target Start/End: Original strand, 25461681 - 25461787
Alignment:
Q  627 ataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagctt 726  Q
    ||||||||| |||||  ||||||||||||||||||||   ||||| ||| |||||||| | ||||| |||||||||||||||||||| ||| ||||||||    
T  25461681 ataagttctccaatagagcttataaaaacaacttataacatatactaaaccaatttaacgatattt-atcttttgctataaaaatagcttatgcaagctt 25461779  T
Q  727 atacataa 734  Q
    ||| ||||    
T  25461780 atatataa 25461787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 36229758 - 36229705
Alignment:
Q  8 cacgttgaagacgagttcataatggagcaaagatgaacttgttgaaaacatgtt 61  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  36229758 cacgttgaagacgagttcataatggagcaaagatgaactcgttgaagacatgtt 36229705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 670 - 750
Target Start/End: Original strand, 42500302 - 42500382
Alignment:
Q  670 acaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcggctgtgctataag 750  Q
    |||||| ||||||||   |||||||||||||| ||||||||||| ||| |||||||||||||| ||||  |||||||||||    
T  42500302 acaaaaacaatttaactttattttatcttttgatataaaaatagcttatgcaagcttatacattagcgcttgtgctataag 42500382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 623 - 700
Target Start/End: Original strand, 16937913 - 16937990
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatctttt 700  Q
    |||| |||||||| |||||| || |||||||||||||||||   ||||||||| |||||||| | |||||||||||||    
T  16937913 tttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttattttatctttt 16937990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 619 - 684
Target Start/End: Complemental strand, 17652305 - 17652240
Alignment:
Q  619 cttatttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 684  Q
    ||||||||||||||| ||||| || |||||| ||||||||||||| | ||||||||| ||||||||    
T  17652305 cttatttcataagttgttcaacatagcttatgaaaacaacttatagtatatacaaaagcaatttaa 17652240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 623 - 736
Target Start/End: Complemental strand, 25461131 - 25461019
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||| |||||| |||||  |||||| |||||||||||||   ||||||||| ||||  ||   || |||||||||||||| |||||||| ||| ||||    
T  25461131 tttcatcagttctccaatagagcttatgaaaacaacttataacatatacaaaaacaatacaacttta-tttatcttttgctagaaaaatagcttacgcaa 25461033  T
Q  723 gcttatacataagc 736  Q
    ||||||| ||||||    
T  25461032 gcttatatataagc 25461019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 623 - 700
Target Start/End: Original strand, 34102344 - 34102421
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatctttt 700  Q
    |||||| |||||| ||| |||||||||||||||||||||||   ||||||||| ||| ||||   |||||||||||||    
T  34102344 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattattttatctttt 34102421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 645 - 717
Target Start/End: Complemental strand, 14932307 - 14932236
Alignment:
Q  645 cttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagatta 717  Q
    ||||||| |||| ||||||   ||||||||| ||||||||   ||||||||||||||||||||||||||||||    
T  14932307 cttataacaacagcttatagcttatacaaaa-caatttaactttattttatcttttgctataaaaatagatta 14932236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 677 - 736
Target Start/End: Complemental strand, 15015837 - 15015778
Alignment:
Q  677 caatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    |||||||| | ||||| | ||||||||| |||||||| ||| ||||||||||||||||||    
T  15015837 caatttaacgttatttcaccttttgctacaaaaatagcttatgcaagcttatacataagc 15015778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 688 - 737
Target Start/End: Complemental strand, 7999181 - 7999132
Alignment:
Q  688 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    ||||||| ||||||| |||||||||  ||| |||||||||||||||||||    
T  7999181 tattttaccttttgccataaaaataacttatgcaagcttatacataagcg 7999132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 623 - 737
Target Start/End: Complemental strand, 32592626 - 32592513
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| |||||| ||||||||||||||||||||  |||||||||| ||||||||   ||||||||||||| |||||||||||| ||| ||||    
T  32592626 tttcataagttctccaatattgcttataaaaacaacttatagcgtatacaaaa-caatttaacattattttatctttttctataaaaatagtttatgcaa 32592528  T
Q  723 gcttatacataagcg 737  Q
    |||||||||||||||    
T  32592527 gcttatacataagcg 32592513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 623 - 727
Target Start/End: Original strand, 43279559 - 43279661
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||| ||||||| |||||| ||||||||||||||||||||  | |||||||| |||||| |   |||||||||||||| ||||||||||| ||| ||||    
T  43279559 tttcacaagttctccaatatagcttataaaaacaacttata--gcatacaaaaacaatttcacattattttatcttttgatataaaaatagcttatgcaa 43279656  T
Q  723 gctta 727  Q
    |||||    
T  43279657 gctta 43279661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 627 - 709
Target Start/End: Complemental strand, 24100963 - 24100880
Alignment:
Q  627 ataagttcttcaatatggcttataaaaacaacttatattgt-atacaaaatcaatttaatgctattttatcttttgctataaaa 709  Q
    |||||||||||||||| |||||| ||||||| ||||| | | |||||||||||| |||||| ||||||| ||||||||||||||    
T  24100963 ataagttcttcaatatagcttattaaaacaatttatagtattatacaaaatcaaattaatgttattttaccttttgctataaaa 24100880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 623 - 735
Target Start/End: Complemental strand, 20933795 - 20933683
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||| | |||||| ||||| |||||||||||| |   |||| | || ||||||||   |||||||||||||| | ||||||||||||| ||||    
T  20933795 tttcataagttttccaatatagcttagaaaaacaacttagagcatatatagaagcaatttaacattattttatcttttgttgtaaaaatagattatgcaa 20933696  T
Q  723 gcttatacataag 735  Q
    || ||||||||||    
T  20933695 gcctatacataag 20933683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 623 - 735
Target Start/End: Complemental strand, 26202068 - 26201956
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgta-tacaaaatcaatttaatgctattttatct-tttgctataaaaatagattaagc 720  Q
    ||||||||||||| ||||||  |||||||||||||||||||  | | ||| | | |||||||| | |||||||||| |||||||||||||||| ||| ||    
T  26202068 tttcataagttctccaatatatcttataaaaacaacttata--gcagtacgagaccaatttaacgttattttatctctttgctataaaaatagcttatgc 26201971  T
Q  721 aagcttatacataag 735  Q
    ||||||||| |||||    
T  26201970 aagcttatatataag 26201956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 655 - 713
Target Start/End: Original strand, 42420356 - 42420414
Alignment:
Q  655 caacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||||  ||||||||| |||||||| | ||||||||||||||||||||||||||    
T  42420356 caacttatatcatatacaaaaacaatttaacgttattttatcttttgctataaaaatag 42420414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 623 - 735
Target Start/End: Original strand, 23974522 - 23974632
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||||||||||  ||||| |||||  |||| | ||||||  ||||| |||| ||||||||  ||||||| |||||| |||||||||||| ||||| ||    
T  23974522 tttcataagttctcaaatatagcttaagaaaaaagcttataacgtataaaaaagcaatttaa--ctattttgtctttttctataaaaatagcttaagtaa 23974619  T
Q  723 gcttatacataag 735  Q
    |||||| ||||||    
T  23974620 gcttatgcataag 23974632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 623 - 729
Target Start/End: Complemental strand, 12289837 - 12289730
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtata-caaaatcaatttaatgctattttatcttttgctataaaaatagattaagca 721  Q
    ||||||||||||| ||||||   ||||||||||||||||||   | || ||||| ||||||||||  |||||||||||| || || ||| || |||||||    
T  12289837 tttcataagttctccaatataaattataaaaacaacttataacatgtaccaaaaacaatttaatgtcattttatcttttcctgtagaaacagcttaagca 12289738  T
Q  722 agcttata 729  Q
    ||||||||    
T  12289737 agcttata 12289730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 667 - 713
Target Start/End: Complemental strand, 1875122 - 1875076
Alignment:
Q  667 tatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||| |||||||||| |||||||||||||||||||| |||||    
T  1875122 tatacaaaagcaatttaatgttattttatcttttgctataacaatag 1875076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 624 - 709
Target Start/End: Original strand, 39659540 - 39659625
Alignment:
Q  624 ttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaa 709  Q
    ||||||||||||  ||||| |||||||||||||| |||||   || |||||| |||||||| | |||| ||||||||| |||||||    
T  39659540 ttcataagttctctaatatagcttataaaaacaagttataacatagacaaaaacaatttaacgttattgtatcttttgttataaaa 39659625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 688 - 736
Target Start/End: Complemental strand, 15305632 - 15305584
Alignment:
Q  688 tattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||| ||||    
T  15305632 tattttatcatttgctataaaaatagcttatgcaagcttatacacaagc 15305584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 710
Target Start/End: Original strand, 11201412 - 11201499
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaa 710  Q
    ||||||||||||| |||||| |  || |||||||||||||| | ||||||||| |||||| |   |||||||||||||  ||||||||    
T  11201412 tttcataagttctccaatatagtatacaaaaacaacttatagtatatacaaaaacaattttaccttattttatcttttaatataaaaa 11201499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 729
Target Start/End: Complemental strand, 12194992 - 12194885
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatac-aaaatcaatttaatgctattttatcttttgctataaaaatagattaagca 721  Q
    ||||| ||||||| ||||||  |||||| ||||||| ||||   ||||| |||| ||||| ||||  |||||||||||| ||||| ||| || |||||||    
T  12194992 tttcacaagttctccaatataacttatataaacaacctataacatataccaaaaacaattgaatgtcattttatcttttcctatagaaacagcttaagca 12194893  T
Q  722 agcttata 729  Q
    ||||||||    
T  12194892 agcttata 12194885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 623 - 713
Target Start/End: Complemental strand, 4026857 - 4026767
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||||||||||  ||   |||| |||||| |||||| | ||| |||||  |||||||   ||||||||||||||||||||||||||    
T  4026857 tttcataagttcttcaggataatttatgaaaacagcttataatttatgcaaaaataatttaactttattttatcttttgctataaaaatag 4026767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 630 - 700
Target Start/End: Original strand, 39073726 - 39073796
Alignment:
Q  630 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatctttt 700  Q
    |||||| |||||| |||||||||||  |||||||   ||||||||| |||||||| | |||||||||||||    
T  39073726 agttctccaatatagcttataaaaattacttatagcatatacaaaaacaatttaacgttattttatctttt 39073796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 623 - 684
Target Start/End: Complemental strand, 40279237 - 40279176
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 684  Q
    ||||||||||||| ||| || |||||| ||||||||||||||  ||||| ||| ||||||||    
T  40279237 tttcataagttctccaacatagcttatgaaaacaacttatatcttataccaaaacaatttaa 40279176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 626 - 735
Target Start/End: Original strand, 12862281 - 12862389
Alignment:
Q  626 cataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagct 725  Q
    |||||||||| |||||| |||||| |||||||||||||   ||||||||| ||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  12862281 cataagttctccaatatagcttatgaaaacaacttatagcatatacaaaa-caatttaaatctattttatcttttgctataaaaatagattatgcaagct 12862379  T
Q  726 tatacataag 735  Q
    || |||||||    
T  12862380 taaacataag 12862389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 623 - 712
Target Start/End: Original strand, 49034293 - 49034382
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaata 712  Q
    ||||| ||||||| |||||| ||||||||||||||||||||   ||| || || |||||||| | |||||||||||||||||||||||||    
T  49034293 tttcagaagttctccaatatagcttataaaaacaacttatagcatatgcacaaacaatttaacggtattttatcttttgctataaaaata 49034382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 623 - 736
Target Start/End: Complemental strand, 20880516 - 20880404
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| |||||| |||| ||||||||  |||||   ||||||||| ||||||||   | ||||||| |||||||||||||||| ||| | ||    
T  20880516 tttcataagttctccaatatagcttttaaaaacagtttatagcatatacaaaaacaatttaact-tgttttatcatttgctataaaaatagcttatgtaa 20880418  T
Q  723 gcttatacataagc 736  Q
    ||||||||||||||    
T  20880417 gcttatacataagc 20880404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 672 - 736
Target Start/End: Original strand, 51929439 - 51929504
Alignment:
Q  672 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagc-aagcttatacataagc 736  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||    
T  51929439 aaaaacaatttaatgctattttatcttttgctataaaaatatcttatgcaaagcttatacataagc 51929504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 626 - 734
Target Start/End: Original strand, 30956659 - 30956767
Alignment:
Q  626 cataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagct 725  Q
    |||||||||| ||| || |||| | |||||||||||||   ||||||||| ||||||||   ||||||||||||||||||| |||||| ||| | |||||    
T  30956659 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagct 30956758  T
Q  726 tatacataa 734  Q
    ||| |||||    
T  30956759 tatgcataa 30956767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 626 - 734
Target Start/End: Original strand, 30972471 - 30972579
Alignment:
Q  626 cataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagct 725  Q
    |||||||||| ||| || |||| | |||||||||||||   ||||||||| ||||||||   ||||||||||||||||||| |||||| ||| | |||||    
T  30972471 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagct 30972570  T
Q  726 tatacataa 734  Q
    ||| |||||    
T  30972571 tatgcataa 30972579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 623 - 735
Target Start/End: Complemental strand, 39980769 - 39980657
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| |||||| ||||||||||||||||||||   | | ||||| |||||||| | |||| ||| || ||||||||||| || | | ||||    
T  39980769 tttcataagttctccaatatagcttataaaaacaacttatagcatgttcaaaaacaatttaacgttattgtatgttctgctataaaaaaagctaatgcaa 39980670  T
Q  723 gcttatacataag 735  Q
     ||||||||||||    
T  39980669 acttatacataag 39980657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 623 - 734
Target Start/End: Original strand, 36631081 - 36631192
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| |||||| ||| ||||||||||||||||   | ||||||| ||||||||   || |||||| ||| ||||| |||||| |||||| |    
T  36631081 tttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaactttactttatcctttactatagaaatagcttaagcga 36631180  T
Q  723 gcttatacataa 734  Q
    | ||||||||||    
T  36631181 gtttatacataa 36631192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 630 - 735
Target Start/End: Complemental strand, 5331326 - 5331222
Alignment:
Q  630 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 729  Q
    ||||||||||| | ||||||||||||||||||||     || || | |||||||| | |||||| ||||||||||||||| ||| ||| |||||||||||    
T  5331326 agttcttcaatgtagcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgctataaaa-tagcttatgcaagcttata 5331228  T
Q  730 cataag 735  Q
    ||||||    
T  5331227 cataag 5331222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 630 - 735
Target Start/End: Original strand, 29520516 - 29520620
Alignment:
Q  630 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 729  Q
    ||||||||||| | ||||||||||||||||||||     || || | |||||||| | |||||| ||||||||||| ||||||| ||| |||||||||||    
T  29520516 agttcttcaatgtagcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgctat-aaaatagcttatgcaagcttata 29520614  T
Q  730 cataag 735  Q
    ||||||    
T  29520615 cataag 29520620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 737
Target Start/End: Original strand, 18405860 - 18405976
Alignment:
Q  622 atttcataagttcttcaatatggcttataaaaacaacttatattgtatac-aaaatcaatttaatgctattttatcttttgctataaaaatagattaagc 720  Q
    |||||||||||||| ||| || |||||| |||||||||||||   ||||| ||||  |||| || | ||||||||||||| ||||| |||||  ||| |     
T  18405860 atttcataagttctccaagatagcttatgaaaacaacttatagcatatacaaaaaaaaattcaacgatattttatcttttcctatataaataacttatgt 18405959  T
Q  721 aagcttatacataagcg 737  Q
    |||||||||||||||||    
T  18405960 aagcttatacataagcg 18405976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 737
Target Start/End: Complemental strand, 20170537 - 20170449
Alignment:
Q  649 taaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    |||||||||||||||   ||||||||| ||||||||   |||||||||||||||  ||||||||| ||  ||||||| |||||||||||    
T  20170537 taaaaacaacttatagcatatacaaaaacaatttaacattattttatcttttgcagtaaaaatagcttgtgcaagctgatacataagcg 20170449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 713
Target Start/End: Complemental strand, 901964 - 901874
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||||||| |||||| ||||||||||||||  ||||   |||| ||||  ||| ||||| ||||||||||||||||  ||||||||    
T  901964 tttcataagttctccaatatagcttataaaaacaaagtataacatatataaaaataatataatgttattttatcttttgctcgaaaaatag 901874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 701
Target Start/End: Complemental strand, 36189606 - 36189528
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttg 701  Q
    ||||||||||||| ||||||  |||||||||| | |||||||  ||||||||| ||||||||   ||||||||||||||    
T  36189606 tttcataagttctccaatatatcttataaaaatagcttatatcatatacaaaaacaatttaactttattttatcttttg 36189528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 623 - 664
Target Start/End: Complemental strand, 36887544 - 36887503
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatat 664  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  36887544 tttcataagttcttcaagatggcttatgaaaacaacttatat 36887503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 672 - 736
Target Start/End: Complemental strand, 35696251 - 35696187
Alignment:
Q  672 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    |||| |||||||||| || ||||||||||||||||||||||| ||| ||||| | ||||| ||||    
T  35696251 aaaaacaatttaatgttagtttatcttttgctataaaaatagcttacgcaagttcatacaaaagc 35696187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 737
Target Start/End: Original strand, 1508675 - 1508725
Alignment:
Q  688 tattttatcttttgctataaaaa-tagattaagcaagcttatacataagcg 737  Q
    |||||||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  1508675 tattttatcttttgctttaaaaaatagtttatgcaagcttatacataagcg 1508725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 623 - 737
Target Start/End: Original strand, 13715602 - 13715718
Alignment:
Q  623 tttcataagttcttcaatatggcttata--aaaacaacttatattgtatacaaaatc-aatttaatgctattttatcttttgctataaaaatagattaag 719  Q
    ||||||||||| | |||||| |||||||  ||||||||||||||  ||||||||||| |||| |||| ||||||| |||| | | |||||| || ||| |    
T  13715602 tttcataagttgtccaatatcgcttatataaaaacaacttatatcatatacaaaatcaaattaaatgttattttaactttcgatctaaaaaaagcttacg 13715701  T
Q  720 caagcttatacataagcg 737  Q
    | |||| |||||||||||    
T  13715702 c-agctaatacataagcg 13715718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 639 - 713
Target Start/End: Original strand, 24684869 - 24684943
Alignment:
Q  639 atatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    |||| |||||||||| |||||||||   ||||||||| ||||| ||   ||||||||||||| ||||||||||||    
T  24684869 atattgcttataaaagcaacttatagcatatacaaaaacaattaaaatttattttatctttttctataaaaatag 24684943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 623 - 685
Target Start/End: Complemental strand, 47132371 - 47132309
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaat 685  Q
    |||||||| |||| |||||| ||||||||||||||| ||||   ||||||||| |||||||||    
T  47132371 tttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaaacaatttaat 47132309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 623 - 684
Target Start/End: Complemental strand, 30443933 - 30443872
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 684  Q
    ||||||||||||| |||||| | ||||||||||| ||||||   ||||||||| ||||||||    
T  30443933 tttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaagcaatttaa 30443872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 7e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 632 - 736
Target Start/End: Original strand, 31076425 - 31076529
Alignment:
Q  632 ttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttataca 731  Q
    ||||||||||| |||||||||||||| |||||   ||||||||| || |||||   |||||||||||||||| ||||||||| ||| |||||||||||||    
T  31076425 ttcttcaatatagcttataaaaacaatttatagcatatacaaaaacagtttaaacttattttatcttttgctctaaaaatagcttatgcaagcttataca 31076524  T
Q  732 taagc 736  Q
    |||||    
T  31076525 taagc 31076529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 623 - 735
Target Start/End: Original strand, 54069447 - 54069559
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||| ||||||||||||  ||||||||||||| |||||   ||||||||| ||||||||   |||||||||||||| |||||||||||  || ||||    
T  54069447 tttcatatgttcttcaatataacttataaaaacaaattatagcatatacaaaaacaatttaacattattttatcttttgatataaaaatagcatatgcaa 54069546  T
Q  723 gcttatacataag 735  Q
    |||||||||||||    
T  54069547 gcttatacataag 54069559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 627 - 722
Target Start/End: Complemental strand, 44797922 - 44797827
Alignment:
Q  627 ataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||| ||| |||||  ||||||||||||||||||||  ||| ||||||||||||||| | | |||||||||||||||||||||||| ||| ||||    
T  44797922 ataagctctccaatacagcttataaaaacaacttatagcgtacacaaaatcaatttaacgttgttttatcttttgctataaaaatagcttatgcaa 44797827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 623 - 750
Target Start/End: Complemental strand, 54426083 - 54425958
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| |||||| | ||||||||||||||||||   |||| |||  ||||||| || ||||||||||  ||||| |||| ||| ||| ||||    
T  54426083 tttcataagttctccaatatagattataaaaacaacttataacatatataaa--caatttagtgttattttatctgctgctacaaaagtagcttatgcaa 54425986  T
Q  723 gcttatacataagcggctgtgctataag 750  Q
    |||||||||||||||  |||| ||||||    
T  54425985 gcttatacataagcgcttgtgatataag 54425958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 672 - 735
Target Start/End: Complemental strand, 43505947 - 43505884
Alignment:
Q  672 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataag 735  Q
    |||| |||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  43505947 aaaaacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataag 43505884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 623 - 734
Target Start/End: Original strand, 50681119 - 50681230
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||||| |||| |||||| ||||||| ||||||||||||   ||||||||| ||||||||   ||||||||||| | |||||||||||| ||  | ||    
T  50681119 tttcataatttctccaatatagcttatataaacaacttatagcatatacaaaaacaatttaacattattttatcttatcctataaaaatagcttttgtaa 50681218  T
Q  723 gcttatacataa 734  Q
    ||||||||||||    
T  50681219 gcttatacataa 50681230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 623 - 737
Target Start/End: Original strand, 33586985 - 33587098
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| | |||| ||||||||||||||| ||||   ||||||||| |  || || | | |||||||||| ||||||||||||| ||| ||||    
T  33586985 tttcataagttctccgatatagcttataaaaacaacctataacatatacaaaaacg-ttcaacgttgttttatctttcgctataaaaatagcttatgcaa 33587083  T
Q  723 gcttatacataagcg 737  Q
    |||||||||||||||    
T  33587084 gcttatacataagcg 33587098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 638 - 750
Target Start/End: Original strand, 42404043 - 42404155
Alignment:
Q  638 aatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    ||||||||||||||||||| |||| |   | ||||||| ||||||||   ||||||||||||||||||||||| ||  || |||| |||||||||||| |    
T  42404043 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagcgtatgcaaacttatacataagtg 42404142  T
Q  738 gctgtgctataag 750  Q
      |||||||||||    
T  42404143 cttgtgctataag 42404155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 713
Target Start/End: Original strand, 21731686 - 21731773
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    |||||||| |||| |||||| ||||||||||||||||||||    |||||||| |||   |||| || |||||||||||||||||||||||    
T  21731686 tttcataaattctccaatatagcttataaaaacaacttatagcacatacaaaaacaa---aatgttactttatcttttgctataaaaatag 21731773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 623 - 702
Target Start/End: Original strand, 39691173 - 39691252
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgc 702  Q
    |||| ||||||||||||||| ||||||||||||||||||||   |||||||||  | |||||   |||||||||||||||    
T  39691173 tttcgtaagttcttcaatatagcttataaaaacaacttatagcatatacaaaacaattttaacattattttatcttttgc 39691252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 644 - 735
Target Start/End: Complemental strand, 41336779 - 41336689
Alignment:
Q  644 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataag 735  Q
    ||||| |||||||| |||||   ||||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||| ||||||||||    
T  41336779 gcttagaaaaacaatttataacatatacaaaaacaatttaactttattttatcttt-gctataaaaatagcttatgcaagcctatacataag 41336689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 713
Target Start/End: Complemental strand, 11347818 - 11347728
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||||||| | |||   |||||||||| |||||||| | |||||||||   || ||| | ||||||||||||||||||||||||||    
T  11347818 tttcataagttctccgataaatcttataaaaataacttatagtatatacaaaaatgatctaaagttattttatcttttgctataaaaatag 11347728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 733
Target Start/End: Original strand, 15177232 - 15177342
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||| ||||||  | ||| |||||||||||| |||||||    ||| || | |||||||| | |||||||||||| ||||| ||||||| ||| ||||    
T  15177232 tttcattagttctctagtatagcttataaaaaccacttatagcacatagaagaacaatttaacgttattttatctttagctattaaaatagcttatgcaa 15177331  T
Q  723 gcttatacata 733  Q
    |||||||||||    
T  15177332 gcttatacata 15177342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 713
Target Start/End: Complemental strand, 17884108 - 17884018
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||| ||| |||||| |||||| ||||||||| |||   ||||||||| ||||||||   |||||||||||||| |||| ||||||    
T  17884108 tttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatcttttgttatagaaatag 17884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 668 - 734
Target Start/End: Original strand, 25904285 - 25904351
Alignment:
Q  668 atacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataa 734  Q
    |||||||||||||||||   |||||||||||||||| ||||||||| ||| | ||||||||| ||||    
T  25904285 atacaaaatcaatttaactttattttatcttttgctgtaaaaatagcttatgtaagcttatatataa 25904351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 617 - 737
Target Start/End: Original strand, 40831053 - 40831179
Alignment:
Q  617 aacttatttcataagttcttcaatatggcttataaaaacaacttat-----attgt-atacaaaatcaatttaatgctattttatcttttgctataaaaa 710  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||     || || |||||||| |||||||  |  |||| |||||||||||| |||     
T  40831053 aacttatttcataagttctccaatctagcttataaaaacaacttattgcaaatagtaatacaaaaccaatttagcgtcatttcatcttttgctattaaag 40831152  T
Q  711 tagattaagcaagcttatacataagcg 737  Q
    ||  ||| |||||||||| ||||||||    
T  40831153 taccttatgcaagcttattcataagcg 40831179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 672 - 737
Target Start/End: Complemental strand, 403518 - 403453
Alignment:
Q  672 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    |||| |||||||| | |||||||||||||||||||||| ||  ||| ||||||||||| |||||||    
T  403518 aaaaacaatttaacgttattttatcttttgctataaaagtaacttacgcaagcttatagataagcg 403453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 623 - 712
Target Start/End: Complemental strand, 9760480 - 9760391
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaata 712  Q
    ||||||||||||| |||||| ||||||||||||||||||||   |||  ||||  |||||||   ||||||||||||| | |||||||||    
T  9760480 tttcataagttctccaatatagcttataaaaacaacttatagcatattaaaaaagaatttaactttattttatctttttcaataaaaata 9760391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 667 - 735
Target Start/End: Original strand, 45935294 - 45935362
Alignment:
Q  667 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataag 735  Q
    ||||||||| ||| |||| | || || ||||||||||||||| |||| ||| |||||||||||||||||    
T  45935294 tatacaaaaacaaattaacgttaattaatcttttgctataaacatagcttatgcaagcttatacataag 45935362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 713
Target Start/End: Original strand, 46592239 - 46592330
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaa-acaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||||||| ||||||  ||||||||| ||||||||||   |||| ||||||||||||  |  |||| || |||||||||||||||||    
T  46592239 tttcataagttctccaatataacttataaaaaacaacttataacatatataaaatcaatttaccgtcatttaattttttgctataaaaatag 46592330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 623 - 684
Target Start/End: Original strand, 53294144 - 53294205
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 684  Q
    |||||||||||||  ||||| | ||||||||||||||||||   ||||||||| ||||||||    
T  53294144 tttcataagttctctaatatagtttataaaaacaacttatagcatatacaaaaacaatttaa 53294205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 7e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 623 - 734
Target Start/End: Complemental strand, 420400 - 420289
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| |||||| |||||   ||||||||||||   ||||||||| ||||| ||   ||||||||||||||||||||| |||| ||| ||||    
T  420400 tttcataagttctccaatatagcttacggaaacaacttatagcatatacaaaaacaattgaacattattttatcttttgctataaacatagcttatgcaa 420301  T
Q  723 gcttatacataa 734  Q
    ||||||||||||    
T  420300 gcttatacataa 420289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 623 - 734
Target Start/End: Original strand, 38138509 - 38138620
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||||||||| ||||||| ||| ||||||||||||||||   |||||||||||||| ||| | || |||||||| | |||||||||||| |||  |||    
T  38138509 tttcataagttcgtcaatatagctaataaaaacaacttatagcatatacaaaatcaatgtaacgttactttatcttatactataaaaatagcttatccaa 38138608  T
Q  723 gcttatacataa 734  Q
     |||||||||||    
T  38138609 ccttatacataa 38138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 624 - 737
Target Start/End: Complemental strand, 48470083 - 48469970
Alignment:
Q  624 ttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaag 723  Q
    |||||||||| ||||| || |||||| ||||||||||||||| ||||||||| ||||||||    ||||||||||||||| || |||||| ||| | | |    
T  48470083 ttcataagttattcaaaatagcttatgaaaacaacttatattatatacaaaaacaatttaacttaattttatcttttgctgtagaaatagcttatgaagg 48469984  T
Q  724 cttatacataagcg 737  Q
    |||||||| |||||    
T  48469983 cttatacaaaagcg 48469970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 623 - 735
Target Start/End: Complemental strand, 31744349 - 31744237
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||||||||||||||||| | ||||||||  |||||| |   ||| ||||| |||||||| ||||||||||||||  |||| ||||||| ||| ||||    
T  31744349 tttcataagttcttcaatatagtttataaaattaacttaaagcatatccaaaaacaatttaacgctattttatctttaactatgaaaataggttatgcaa 31744250  T
Q  723 gcttatacataag 735  Q
    | |||||||||||    
T  31744249 gtttatacataag 31744237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 630 - 735
Target Start/End: Original strand, 45806514 - 45806619
Alignment:
Q  630 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 729  Q
    ||||||||| | | ||||||||||||||||||||     || |||| |||||||| | |||||| |||||||||||||| |||| ||| |||||||||||    
T  45806514 agttcttcagtgtagcttataaaaacaacttatagcaattagaaaaacaatttaacgttattttctcttttgctataaacatagcttatgcaagcttata 45806613  T
Q  730 cataag 735  Q
    ||||||    
T  45806614 cataag 45806619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 623 - 734
Target Start/End: Original strand, 4970823 - 4970929
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||||||||||  |||||  |||||||||| ||||||||   ||||||||| ||||||     ||||||||||||||||||| |||||| ||| | ||    
T  4970823 tttcataagttctctaatatatcttataaaaagaacttatagcatatacaaaaacaattt-----tattttatcttttgctatagaaatagcttatgtaa 4970917  T
Q  723 gcttatacataa 734  Q
    ||||||||||||    
T  4970918 gcttatacataa 4970929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 623 - 728
Target Start/End: Complemental strand, 45338488 - 45338384
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||| |||||| |||||| ||||| |||||||||||| |   ||||||||| |||||||| | |||||||| ||||||||| ||||||  ||| ||||    
T  45338488 tttcatcagttctccaatatagctta-aaaaacaacttacagcatatacaaaaacaatttaaggttattttattttttgctatgaaaataacttatgcaa 45338390  T
Q  723 gcttat 728  Q
    ||||||    
T  45338389 gcttat 45338384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 688 - 737
Target Start/End: Complemental strand, 48140191 - 48140142
Alignment:
Q  688 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  48140191 tattttatcttttgttataaaaatagcttatgcaagcttatacataagcg 48140142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 677 - 729
Target Start/End: Original strand, 45806410 - 45806462
Alignment:
Q  677 caatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 729  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||||||||    
T  45806410 caatttaacgttattttatcttttgctataaaaatagcttatgcaagcttata 45806462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 667 - 730
Target Start/End: Original strand, 31247602 - 31247665
Alignment:
Q  667 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatac 730  Q
    ||||||||| |||||||  | ||||| |||||||||||||||||||| ||| ||||||||||||    
T  31247602 tatacaaaaccaatttatcgttatttcatcttttgctataaaaatagcttatgcaagcttatac 31247665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 725
Target Start/End: Original strand, 19022615 - 19022717
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| |||||| ||||||||||||||||||||   | ||  ||| |||||||| | | |||||||||||   ||| |||||| ||||||||    
T  19022615 tttcataagttctccaatatagcttataaaaacaacttatagcatttattaaaacaatttaaagttcttttatcttttatgatagaaatagcttaagcaa 19022714  T
Q  723 gct 725  Q
    |||    
T  19022715 gct 19022717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 669 - 736
Target Start/End: Complemental strand, 20234477 - 20234408
Alignment:
Q  669 tacaaaatcaatttaatgctattttatcttttgctataaaaa--tagattaagcaagcttatacataagc 736  Q
    ||||||| |||||||||  |||||||||||||||||||||||  ||| ||| ||| ||||||||||||||    
T  20234477 tacaaaaacaatttaattatattttatcttttgctataaaaatttagcttatgcatgcttatacataagc 20234408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 693 - 735
Target Start/End: Original strand, 21568728 - 21568770
Alignment:
Q  693 tatcttttgctataaaaatagattaagcaagcttatacataag 735  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  21568728 tatcttttgctataaaaatagcttatgcaagcttatacataag 21568770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 690 - 731
Target Start/End: Original strand, 31247666 - 31247707
Alignment:
Q  690 ttttatcttttgctataaaaatagattaagcaagcttataca 731  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  31247666 ttttatcttttgctataaaaatagcttatgcaagcttataca 31247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 623 - 684
Target Start/End: Original strand, 43694600 - 43694661
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 684  Q
    ||||||||||||||| |||| ||||||||||||| ||||||   ||||||||| ||||||||    
T  43694600 tttcataagttcttcgatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 43694661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 623 - 684
Target Start/End: Original strand, 46280302 - 46280363
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 684  Q
    ||||||||||||| |||||| ||||||||||||| ||||||   ||||||||| ||||||||    
T  46280302 tttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 46280363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 735
Target Start/End: Original strand, 23989579 - 23989626
Alignment:
Q  688 tattttatcttttgctataaaaatagattaagcaagcttatacataag 735  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||    
T  23989579 tattttatcttttactataaaaatagtttatgcaaacttatacataag 23989626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 644 - 722
Target Start/End: Original strand, 19302610 - 19302688
Alignment:
Q  644 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||||||||||   ||||||||| |||||||| | || | |||||| |||| ||||||||| ||| ||||    
T  19302610 gcttataaaaacaacttataacatatacaaaaacaatttaacgttactatatcttctgctgtaaaaatagcttatgcaa 19302688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 667 - 737
Target Start/End: Complemental strand, 46078143 - 46078073
Alignment:
Q  667 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    ||||||||| ||||||||   | ||||||||||| |||||||||||  ||| | |||||||||||||||||    
T  46078143 tatacaaaaacaatttaactttgttttatctttttctataaaaataacttatgtaagcttatacataagcg 46078073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 623 - 712
Target Start/End: Complemental strand, 20269616 - 20269527
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaata 712  Q
    |||||||| |||| |||||  |||||  |||||||||||||   | ||||||| ||||||||   | |||||||||||||||||||||||    
T  20269616 tttcataaattctccaatacagcttagtaaaacaacttataacatttacaaaaacaatttaactttgttttatcttttgctataaaaata 20269527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 688 - 729
Target Start/End: Complemental strand, 45004741 - 45004700
Alignment:
Q  688 tattttatcttttgctataaaaatagattaagcaagcttata 729  Q
    |||||||||||||||||||||||||| ||| |||||| ||||    
T  45004741 tattttatcttttgctataaaaatagtttatgcaagcatata 45004700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 630 - 735
Target Start/End: Complemental strand, 18076229 - 18076124
Alignment:
Q  630 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 729  Q
    ||||||||||||| ||||||||||||||||||||     || |||| ||||||||   |||||| ||||||||||||||||||  ||| |||||||||||    
T  18076229 agttcttcaatatagcttataaaaacaacttatagcaattagaaaaacaatttaaccttattttctcttttgctataaaaataacttatgcaagcttata 18076130  T
Q  730 cataag 735  Q
    ||||||    
T  18076129 cataag 18076124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 672 - 736
Target Start/End: Original strand, 30536637 - 30536701
Alignment:
Q  672 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    |||| |||||||| | ||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  30536637 aaaaacaatttaacgttatcttatcttttgctataaaaatagcttatgcaagcttatacataagc 30536701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 623 - 734
Target Start/End: Complemental strand, 8201273 - 8201162
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| ||| ||  |||||||||||||||||||   || |||||| |||||||||| || |||||||||  | |||||||||   || ||||    
T  8201273 tttcataagttctccaacataacttataaaaacaacttataggatacacaaaaacaatttaatgttaatttatctttgacaataaaaataacatatgcaa 8201174  T
Q  723 gcttatacataa 734  Q
    ||||||| ||||    
T  8201173 gcttatatataa 8201162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 667 - 736
Target Start/End: Complemental strand, 30536474 - 30536405
Alignment:
Q  667 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    ||||||||| ||||||||   ||||||||| |||||||||| ||||| ||| |||| |||||||||||||    
T  30536474 tatacaaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataagc 30536405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 644 - 736
Target Start/End: Complemental strand, 24626314 - 24626222
Alignment:
Q  644 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    |||||| |||||||||||||   ||||||||| ||||||||   | ||||||| ||| ||||| |||||| ||| | ||||||||||||||||    
T  24626314 gcttatgaaaacaacttatagaatatacaaaaacaatttaactttgttttatcctttcctatagaaatagcttatgtaagcttatacataagc 24626222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 623 - 736
Target Start/End: Complemental strand, 31623600 - 31623487
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||| |||||||| |||||| |  |||||||||| ||||||   || |||| | |||||||| |  |||||||||||| |||||||||||| | | | ||    
T  31623600 tttcttaagttctccaatatagtgtataaaaacagcttatagcatacacaagagcaatttaacgtcattttatctttttctataaaaatagctaatgtaa 31623501  T
Q  723 gcttatacataagc 736  Q
    |||||| |||||||    
T  31623500 gcttatgcataagc 31623487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 617 - 737
Target Start/End: Complemental strand, 18556972 - 18556853
Alignment:
Q  617 aacttatttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagatt 716  Q
    |||||||||||||| || |  ||||| |||| ||||| |||||||||  |||||||||| ||||||||   ||||||||||||||| |||||||||| ||    
T  18556972 aacttatttcataatttttcaaatatagcttgtaaaagcaacttatagcgtatacaaaa-caatttaacaatattttatcttttgcaataaaaatagctt 18556874  T
Q  717 aagcaagcttatacataagcg 737  Q
    |  |||||||||||| |||||    
T  18556873 atacaagcttatacacaagcg 18556853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 623 - 713
Target Start/End: Original strand, 41184680 - 41184770
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||||| | ||||||||  ||||||| ||| ||||| | ||||||||| ||||||||   ||||||||||||||||||||||||||    
T  41184680 tttcataagttttccaatatggtatataaaaccaaattataatatatacaaaaacaatttaacattattttatcttttgctataaaaatag 41184770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 623 - 736
Target Start/End: Complemental strand, 42174895 - 42174784
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||| ||||||  |||||||||||||||||||   ||||||||| |  |||||   || ||||||||||| |||||||||||  || ||||    
T  42174895 tttcataagttctccaatataacttataaaaacaacttatagcatatacaaaaac--tttaacattactttatcttttgatataaaaatagcctatgcaa 42174798  T
Q  723 gcttatacataagc 736  Q
    ||||||||||||||    
T  42174797 gcttatacataagc 42174784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 651 - 736
Target Start/End: Complemental strand, 42391377 - 42391293
Alignment:
Q  651 aaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    |||||||||||||   ||||||||| |||||||||| |||||| | ||| | ||||||||||| ||||||||||||||||||||||    
T  42391377 aaaacaacttatagaatatacaaaaacaatttaatgttatttt-tgtttcgttataaaaatagtttaagcaagcttatacataagc 42391293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 669 - 728
Target Start/End: Original strand, 45661185 - 45661244
Alignment:
Q  669 tacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttat 728  Q
    ||||||| |||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  45661185 tacaaaaacaatttaatgttattttatcttttgctataaaaatgacttaagcaagcttat 45661244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 638 - 736
Target Start/End: Original strand, 14385808 - 14385906
Alignment:
Q  638 aatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    ||||| ||||| ||||||||||||||    |||||||| ||||||||   |||| ||||||||||||||||||||| ||  || |||||||||||||||    
T  14385808 aatatagcttacaaaaacaacttataacagatacaaaaacaatttaacattattctatcttttgctataaaaatagtttctgccagcttatacataagc 14385906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 623 - 684
Target Start/End: Original strand, 3234045 - 3234106
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 684  Q
    ||||||||||||| |||||| ||||||||||||||||||||   ||||||||| ||||||||    
T  3234045 tttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaa 3234106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 623 - 735
Target Start/End: Original strand, 44931962 - 44932074
Alignment:
Q  623 tttcataagttcttcaatatggcttat-aaaaacaacttatattg--tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaag 719  Q
    ||||||||||| | |||||| | |||| ||||||||||||||| |  ||||||||| ||||||||  || ||||||||||||||||||| |||| ||| |    
T  44931962 tttcataagttttgcaatatagtttattaaaaacaacttatatagcatatacaaaaacaatttaa--ct-ttttatcttttgctataaatatagtttatg 44932058  T
Q  720 caagcttatacataag 735  Q
    ||||||||||| ||||    
T  44932059 caagcttatacctaag 44932074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 750
Target Start/End: Original strand, 17603414 - 17603544
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctatttt---atcttttgctataaaaatagattaag 719  Q
    ||||| ||||||| |||||| ||||||||||||||||||||   ||||||||| |||||||| | ||||||   ||||||| ||| |||||||| |||      
T  17603414 tttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaacgttattttttaatctttttctacaaaaatagcttatt 17603513  T
Q  720 caagcttatacataagcggctgtgctataag 750  Q
    |||||  | | |||||||  |||||||||||    
T  17603514 caagcgaacatataagcgcttgtgctataag 17603544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 713
Target Start/End: Original strand, 33835484 - 33835574
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||| ||||| |||||| |||||| |||| | |||||| | ||||||||   ||||||||| ||||||||||||| |||| |||||||    
T  33835484 tttcatacgttctccaatatagcttattaaaaaagcttatagtatatacaaacgtaatttaatgttattttatctttttctatgaaaatag 33835574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 713
Target Start/End: Original strand, 33914038 - 33914128
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||| ||||| |||||| |||||| |||| | |||||| | ||||||||   ||||||||| ||||||||||||| |||| |||||||    
T  33914038 tttcatacgttctccaatatagcttattaaaaaagcttatagtatatacaaacgtaatttaatgttattttatctttttctatgaaaatag 33914128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 667 - 713
Target Start/End: Complemental strand, 45145222 - 45145176
Alignment:
Q  667 tatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  45145222 tatacaaaaacaatttaatattattttatcttttgctataaaaatag 45145176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 705 - 750
Target Start/End: Complemental strand, 32491511 - 32491466
Alignment:
Q  705 taaaaatagattaagcaagcttatacataagcggctgtgctataag 750  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||    
T  32491511 taaaaatagcttatgcaagcttatacataagcggttgtgctataag 32491466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 623 - 735
Target Start/End: Original strand, 1510340 - 1510451
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||| |||||||| |||||  ||||||||||||||||||||   ||||||||| ||||| ||   || ||||||||||| | ||||||||| ||  ||||    
T  1510340 tttcgtaagttctccaatagagcttataaaaacaacttataacctatacaaaaacaattgaacatta-tttatcttttgttttaaaaatagcttttgcaa 1510438  T
Q  723 gcttatacataag 735  Q
    ||||||| |||||    
T  1510439 gcttatatataag 1510451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 620 - 735
Target Start/End: Complemental strand, 27976639 - 27976523
Alignment:
Q  620 ttatttcat-aagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaa 718  Q
    ||||||||| |||||||  || || |||||| |||||||||||||   ||||||||| ||||||||   | ||  ||| |||||||||||||||| |||     
T  27976639 ttatttcattaagttctcgaagatagcttatgaaaacaacttatagcatatacaaaaacaatttaactttgttcaatcatttgctataaaaatagcttat 27976540  T
Q  719 gcaagcttatacataag 735  Q
    | |||||||||||||||    
T  27976539 gtaagcttatacataag 27976523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 638 - 734
Target Start/End: Original strand, 37517239 - 37517335
Alignment:
Q  638 aatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataa 734  Q
    ||||| |||||| |||| |||||||| | ||||||||| ||||||||   |||||||| ||||| |||| |||||  ||| || |||||||||||||    
T  37517239 aatatagcttattaaaataacttataatatatacaaaaacaatttaactttattttatattttggtatagaaataacttatgcgagcttatacataa 37517335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 684
Target Start/End: Complemental strand, 6557009 - 6556950
Alignment:
Q  625 tcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 684  Q
    |||||||||||| |||||  |||||||||||||||||||   ||||||||| ||||||||    
T  6557009 tcataagttctttaatataacttataaaaacaacttataacatatacaaaaacaatttaa 6556950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 726
Target Start/End: Complemental strand, 47432135 - 47432033
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||||| |||||||||||  ||||||||| || ||||||   ||| ||||| ||||||||   ||||||||||||| |||||||||||| ||| | ||    
T  47432135 tttcataaattcttcaatataacttataaaa-caccttatagcatattcaaaaacaatttaactttattttatctttttctataaaaatagcttatgtaa 47432037  T
Q  723 gctt 726  Q
    ||||    
T  47432036 gctt 47432033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 623 - 729
Target Start/End: Original strand, 33546483 - 33546589
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||| |||||||| | |||||||||||||||||| |   |||||||||  ||||||  |  ||| |||| ||||| |||||||||| |||| |||    
T  33546483 tttcataagctcttcaatctagcttataaaaacaacttagagcatatacaaaaagaatttagcgtcattatatcctttgccataaaaatagcttaatcaa 33546582  T
Q  723 gcttata 729  Q
    | |||||    
T  33546583 gattata 33546589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 623 - 713
Target Start/End: Original strand, 34795455 - 34795545
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||||||| |||||| ||| ||||||||| | ||||  ||||||| |  ||||| ||  |||||||||||||| | ||||||||||    
T  34795455 tttcataagttctccaatatagctaataaaaacagcatataacgtatacatagacaattaaactctattttatctttttcaataaaaatag 34795545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 644 - 713
Target Start/End: Original strand, 836390 - 836459
Alignment:
Q  644 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    ||||||||||| ||||||||   ||||||||| ||||||| |  ||||||||||||  ||||||||||||    
T  836390 gcttataaaaataacttatagcttatacaaaaacaatttagttttattttatctttcactataaaaatag 836459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 654 - 723
Target Start/End: Complemental strand, 5063472 - 5063403
Alignment:
Q  654 acaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaag 723  Q
    ||||||||||   ||||||||| ||| |||||| |||||||||||||  ||||||||||| ||| |||||    
T  5063472 acaacttataacatatacaaaaacaagttaatgttattttatcttttagtataaaaatagtttatgcaag 5063403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 623 - 737
Target Start/End: Complemental strand, 11893238 - 11893122
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatg--ctattttatcttttgctataaaaatagattaagc 720  Q
    |||||| |||||||||| || |||||| |||||||||||  |  ||||||||| ||||||||||  ||  ||||||||||| ||| ||||||  | | ||    
T  11893238 tttcattagttcttcaacatagcttatgaaaacaacttaagtaatatacaaaaacaatttaatgttcttgtttatcttttgatatgaaaataactcatgc 11893139  T
Q  721 aagcttatacataagcg 737  Q
    ||| ||||||| |||||    
T  11893138 aagtttatacaaaagcg 11893122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 690 - 735
Target Start/End: Complemental strand, 37473372 - 37473327
Alignment:
Q  690 ttttatcttttgctataaaaatagattaagcaagcttatacataag 735  Q
    ||||||| |||||||||||||||| ||| | |||||||||||||||    
T  37473372 ttttatcatttgctataaaaatagcttatgtaagcttatacataag 37473327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 644 - 713
Target Start/End: Original strand, 38882962 - 38883030
Alignment:
Q  644 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    |||||| ||||||||||||||| ||||||||  |||||||  | || |||||||||||||||| ||||||    
T  38882962 gcttatgaaaacaacttatattttatacaaagacaatttagcgtta-tttatcttttgctatagaaatag 38883030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 623 - 750
Target Start/End: Original strand, 16825567 - 16825694
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    ||||||||||||  |||||| |||| || ||||||||||||  ||| |||||| ||||||||   ||||||||| ||| |||||| ||||| ||| ||||    
T  16825567 tttcataagttcggcaatatagcttgtagaaacaacttataacgtaaacaaaaacaatttaacattattttatcctttactataagaatagcttatgcaa 16825666  T
Q  723 gcttatacataagcggctgtgctataag 750  Q
    | |||||||||||||  ||| |||||||    
T  16825667 ggttatacataagcgcttgttctataag 16825694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 619 - 737
Target Start/End: Complemental strand, 12976257 - 12976139
Alignment:
Q  619 cttatttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaa 718  Q
    |||||||||||||||||  ||||| |||||||||||||| || ||   |||| ||||| |||||||   |||||||| |||||||||| |||||| |||     
T  12976257 cttatttcataagttctctaatatagcttataaaaacaaattgtagcatataaaaaattaatttaactttattttatattttgctatagaaatagcttat 12976158  T
Q  719 gcaagcttatacataagcg 737  Q
    |  ||||||||||||||||    
T  12976157 gtgagcttatacataagcg 12976139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 639 - 737
Target Start/End: Complemental strand, 38750382 - 38750284
Alignment:
Q  639 atatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    |||| |||||||||||||||||||||  ||||||||| || |||||   |||||| ||| |  |||||||||||| ||| |||||||||||||||||||    
T  38750382 atatagcttataaaaacaacttatatcatatacaaaaacattttaacattattttttctctgcctataaaaatagcttatgcaagcttatacataagcg 38750284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 623 - 728
Target Start/End: Complemental strand, 6525857 - 6525753
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 722  Q
    |||||||||||||  ||||| ||||||||||||||| |||  | | || ||||| ||||||||| |||||||  ||||||||||||||||| ||| ||||    
T  6525857 tttcataagttctcaaatatagcttataaaaacaacgtatggtatttaaaaaat-aatttaatgttattttagtttttgctataaaaatagcttatgcaa 6525759  T
Q  723 gcttat 728  Q
    ||||||    
T  6525758 gcttat 6525753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 667 - 737
Target Start/End: Original strand, 35644055 - 35644125
Alignment:
Q  667 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    ||||| ||| |||||||| | || |||||||||||| | |||||||| |||||||||||||||||||||||    
T  35644055 tatacgaaaacaatttaacggtaatttatcttttgccagaaaaatagcttaagcaagcttatacataagcg 35644125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 735
Target Start/End: Original strand, 14956373 - 14956437
Alignment:
Q  671 caaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataag 735  Q
    ||||| |||||||||| ||||| ||||||| | |||||||||| ||| |||||||||||||||||    
T  14956373 caaaaacaatttaatgttatttcatcttttacaataaaaatagcttatgcaagcttatacataag 14956437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 736
Target Start/End: Complemental strand, 32976035 - 32975987
Alignment:
Q  688 tattttatcttttgctataaaaatagattaagcaagcttatacataagc 736  Q
    |||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  32976035 tattttatcttttgctataaaaatagcttatgcaagcttatatataagc 32975987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 735
Target Start/End: Original strand, 42043396 - 42043487
Alignment:
Q  644 gcttataaaaacaacttatattgtatacaaaatcaatttaa-tgctattttatcttttgctataaaaatagattaagcaagcttatacataag 735  Q
    |||||| ||||||||||||||  ||| ||||| |||||||| ||| |||||||||||||||||| ||||||  || | |||||||||||||||    
T  42043396 gcttatgaaaacaacttatatcatatccaaaaacaatttaactgc-attttatcttttgctatagaaatagcatatgtaagcttatacataag 42043487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 667 - 734
Target Start/End: Original strand, 12497305 - 12497372
Alignment:
Q  667 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataa 734  Q
    ||||||||| ||| ||||   |||||||||||||||||||||||| | ||| ||||||||||||||||    
T  12497305 tatacaaaaacaagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 713
Target Start/End: Complemental strand, 16736124 - 16736034
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 713  Q
    |||||||| || | |||||| | ||||||| ||||||||||   | ||||||| | |||||||| |||||||||||||||||| |||||||    
T  16736124 tttcataaattttccaatatagtttataaagacaacttataacatgtacaaaaactatttaatgttattttatcttttgctatcaaaatag 16736034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 623 - 700
Target Start/End: Complemental strand, 37945636 - 37945560
Alignment:
Q  623 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatctttt 700  Q
    ||||| ||||| | |||||| |||||||||||||||| |||   |||||||||| ||||||| |||||||||||||||    
T  37945636 tttcagaagttgtacaatatagcttataaaaacaact-atagcatatacaaaattaatttaaagctattttatctttt 37945560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 688 - 737
Target Start/End: Complemental strand, 38353324 - 38353276
Alignment:
Q  688 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  38353324 tattttatcttttgc-ataaaaatagcttatgcaagcttatacataagcg 38353276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 638 - 734
Target Start/End: Original strand, 10758301 - 10758397
Alignment:
Q  638 aatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataa 734  Q
    ||||| ||||||||| ||||||||||   ||||||||| ||||||||   ||||||||  ||||||||| |||||| ||| |  |||||||||||||    
T  10758301 aatatagcttataaagacaacttatagcatatacaaaaacaatttaactttattttatgatttgctatagaaatagtttacgtgagcttatacataa 10758397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 660
Target Start/End: Complemental strand, 28763414 - 28763371
Alignment:
Q  617 aacttatttcataagttcttcaatatggcttataaaaacaactt 660  Q
    ||||||||||||||||||  |||||| |||||||||||||||||    
T  28763414 aacttatttcataagttcagcaatatagcttataaaaacaactt 28763371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 629 - 750
Target Start/End: Original strand, 25930590 - 25930712
Alignment:
Q  629 aagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttat 728  Q
    ||||||| ||| || |||||| ||||||| ||| |   ||||||||| || ||||||  ||||| ||| ||| ||||| |||||| ||| | ||||||||    
T  25930590 aagttctccaagatagcttatgaaaacaatttaaagcatatacaaaaacattttaattttatttcatcctttcctatagaaatagcttatgtaagcttat 25930689  T
Q  729 acataagcg-gctgtgctataag 750  Q
    ||||||| | |||||||||||||    
T  25930690 acataagagcgctgtgctataag 25930712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 688 - 737
Target Start/End: Original strand, 1058169 - 1058218
Alignment:
Q  688 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 737  Q
    ||||||||  |||||||||||||||| ||| | |||||||||||||||||    
T  1058169 tattttatgatttgctataaaaatagcttatgtaagcttatacataagcg 1058218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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