View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4370-Insertion-4 (Length: 713)
Name: NF4370-Insertion-4
Description: NF4370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4370-Insertion-4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 178 - 713
Target Start/End: Original strand, 39944071 - 39944614
Alignment:
| Q |
178 |
actgaatcttgttttgagcccttgaaaccttttcatatgaataattggattaaacattagtaaacaacttttatataactttgcagatcattaagtactt |
277 |
Q |
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| T |
39944071 |
actgaatcttgttttgagcccttgaaaccttttcatatgaataattggattaaacattagtaa-caacttttatataactttgcagatcattaagtactt |
39944169 |
T |
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| Q |
278 |
gctctcactatctgaaatgagtgagacaataaatacttccaaaacagaagctttaagagctttatatatgttagagcatagtccaagagattttagtagt |
377 |
Q |
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| T |
39944170 |
gctctcactatctgaaatgagtgagacaataaatacttccaaaacagaagctttaagagctttatatatgttagagcatagtccaagagattttagtagt |
39944269 |
T |
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| Q |
378 |
cacacaattcaacacattttgactgaagaaagagctcaaacatctacaaatatagttattggacaacaagatcatgtaaactcaccaagcaatgatcctc |
477 |
Q |
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| T |
39944270 |
cacacaattcaacacattttgactgaagaaagagctcaaacatctacaaatatagttattggacaacaagatcatgtaaactcaccaagcaatgatcctc |
39944369 |
T |
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| Q |
478 |
aacagttacttgaacaacagtcacaagtcaatggtcatgaacagtcacaaactccatcaccaaacaatgatccaccacaaaatcaacaaccatcacaaaa |
577 |
Q |
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| T |
39944370 |
aacagttactagaacaacagtcacaaatcaatggtcatgaacagtcacaaactccatcaccaaacaatgatccaccacaaaatcaacaaccatcacaaaa |
39944469 |
T |
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| Q |
578 |
cattgaccctccacaaccaccacaatcttcaccaataaatgatcctca---------agtacaatcaccgattagtcatcctctacaactaacaattcat |
668 |
Q |
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| T |
39944470 |
cattgaccctccacaaccaccacaatcttcaccaataaatgatcctcaagtacaactagtacaatcaccgattagtcatcctctacaactaacaaatcat |
39944569 |
T |
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| Q |
669 |
tcaccacccaacagtccctcacaaccaccatctcacaatccctca |
713 |
Q |
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| T |
39944570 |
tcaccacccaacagtccctcacaaccaccatctcacaatccctca |
39944614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 39943891 - 39943990
Alignment:
| Q |
7 |
acagataaatttaggatttgttcactttcttaaaatattttcaatttacattctaaaaatctaaattcattttaaactgctaacaaattaagtagaatgc |
106 |
Q |
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| T |
39943891 |
acagataaatttaggatttgttcactttctaaaaatattttcaatttacattctaaaaatctgaaatcattttaaactgctaacaaattaagtagaatgc |
39943990 |
T |
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