View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4370-Insertion-5 (Length: 699)

Name: NF4370-Insertion-5
Description: NF4370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4370-Insertion-5
NF4370-Insertion-5
[»] chr5 (3 HSPs)
chr5 (8-402)||(39777161-39777554)
chr5 (399-699)||(39779403-39779703)
chr5 (10-296)||(32743653-32743946)
[»] chr6 (3 HSPs)
chr6 (215-402)||(1094385-1094573)
chr6 (212-333)||(1090696-1090817)
chr6 (208-379)||(34249315-34249486)
[»] chr1 (2 HSPs)
chr1 (215-385)||(29360204-29360373)
chr1 (212-389)||(5716850-5717026)
[»] scaffold0466 (1 HSPs)
scaffold0466 (208-396)||(8234-8421)
[»] chr8 (4 HSPs)
chr8 (216-385)||(9229234-9229403)
chr8 (208-387)||(25678030-25678208)
chr8 (208-337)||(25391406-25391534)
chr8 (247-387)||(25358412-25358553)
[»] scaffold0009 (1 HSPs)
scaffold0009 (205-283)||(3287-3364)
[»] chr2 (1 HSPs)
chr2 (246-318)||(40709194-40709267)
[»] chr3 (1 HSPs)
chr3 (266-299)||(27049173-27049206)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Original strand, 39777161 - 39777554
Alignment:
Q  8 attccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgtgccactagcatcat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39777161 attccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttagtttgtgccactagcatcat 39777260  T
Q  108 atatatactctatattaaagagagaagatggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttcttctaccata 207  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39777261 atatatactct-tataaaagagagaagagggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttcttctaccata 39777359  T
Q  208 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgg 307  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  39777360 attttgggcattgttattgaagctccatcgtgttcagacctcgagtgcataggttcaaacacgcagttgtgtaaactttggggagcaaaaccggatctgg 39777459  T
Q  308 gttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc 402  Q
    |||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39777460 gttgtaccggaggtccaccgaaaattcgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc 39777554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 399 - 699
Target Start/End: Original strand, 39779403 - 39779703
Alignment:
Q  399 aatcaaggaaagatatgagatccattacctcactgatctggccttcaagattttaattgtgatcttggttccaagttctcaaactacctttaatcttttt 498  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39779403 aatcaaggaaagatatgagatccattacctcactgatccggccttcaagattttaattgtgatcttggttccaagttctcaaactacctttaatcttttt 39779502  T
Q  499 gagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgccattgtttttgaacaaatttcttataacctagaagatccgcccaatatt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39779503 gagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgccattgtttttgaacaaatttcttataacctagaagatccgcccaatatt 39779602  T
Q  599 tccacatacattgaggactaggacctcaattctcctcatcgatggtaatgagactgggcaatggtcagataggcctctgatcaaagcattcattactttt 698  Q
    || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39779603 tcaacatacattgaggacgacgacctcaattctcctcatcgatggtaatgagactgggcaatggtcagatagtcctctgatcaaagcattcattactttt 39779702  T
Q  699 a 699  Q
    |    
T  39779703 a 39779703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 32743946 - 32743653
Alignment:
Q  10 tccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgtgccactagcatcatat 109  Q
    ||||| ||||||||||||||| |||||  ||||| |||||||||||| ||||||||||||||||| |||||||||||  |||||||||||  | ||| ||    
T  32743946 tccattagttttcattgccattaatattttttatgttgctaagaaatgttgcaacggaaagatagagccattcattttgtttgtgccactgacgtcacat 32743847  T
Q  110 atatactctatattaaagagagaagatg----gaa----cat---atagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttct 198  Q
    |||||||  |||| || ||||| ||| |    |||    |||    |||||| | |||| ||||||||||||||||||||||| |||| | | | |||||    
T  32743846 atatacttaatataaatgagagcagaggtagagaagtggcatgtggtagaaatgcagctgatcatgctttctattaagctctcttcttctttcttgttct 32743747  T
Q  199 tctaccataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaa 296  Q
    |     ||||||||||| |||||| ||||||||||||||||||  | |||| ||||||   |||| |||| |||||||||||||| |||| |||||||    
T  32743746 t---tgataattttgggtattgtttgtgaagctccatcgtgtt-tggcctcaagtgcatgagttcagacaagcagttgtgtaaaccttggggagcaaa 32743653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 215 - 402
Target Start/End: Complemental strand, 1094573 - 1094385
Alignment:
Q  215 gcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttgca- 313  Q
    |||||||| ||||||||||||||||||||| ||||||||||||  ||||  |||||||||||||||||| || | |||||||||||||| |||||||||     
T  1094573 gcattgtttgtgaagctccatcgtgttcaggcctcgagtgcacgagttcacacacgcagttgtgtaaaccttagggagcaaaaccggatttgggttgcac 1094474  T
Q  314 ccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc 402  Q
    |||||| ||||  ||||||||||| ||| | || ||  |||||||| |||||||||| |||||||||||||||||| |||| |||||||    
T  1094473 ccggagatccaccgaaaatttgctttcaggacagtgacttttgtcacggcacaacaactctcttctatctttcctatctattcaaaatc 1094385  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 212 - 333
Target Start/End: Complemental strand, 1090817 - 1090696
Alignment:
Q  212 tgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttg 311  Q
    ||||||||||| ||||| |||| |||||||||| |||||||||  |  |||| |||||| |||||||||||  |||| ||| |||||||||| |||||||    
T  1090817 tgggcattgtttgtgaaactccgtcgtgttcaggcctcgagtgtccgagttcagacacgtagttgtgtaaatcttggggagtaaaaccggatttgggttg 1090718  T
Q  312 caccggaggtccattgaaaatt 333  Q
    ||| | |||||||| |||||||    
T  1090717 cactgaaggtccatcgaaaatt 1090696  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 379
Target Start/End: Original strand, 34249315 - 34249486
Alignment:
Q  208 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg 306  Q
    |||||||||||||||  |||||||||||||||||  || |||||||||||  |||| |||| |||||| ||||||  |||| ||||||||| ||||  ||    
T  34249315 attttgggcattgtttatgaagctccatcgtgtt-tgatctcgagtgcacgagttcagacatgcagttatgtaaatcttggggagcaaaactggataatg 34249413  T
Q  307 ggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttct 379  Q
     ||||||| |||||||||  |||||||| || |||  |||||||||||   || ||||||||||  |||||||    
T  34249414 agttgcactggaggtccaccgaaaattttctttcagagcaatggttttgaccacggcacaacaaaactcttct 34249486  T

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Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 215 - 385
Target Start/End: Original strand, 29360204 - 29360373
Alignment:
Q  215 gcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgca 313  Q
    ||||||||  |||||||||||||||||  | |||| |||||||   ||| ||||||||||||||||||| |||  |||||||| ||||| | ||||||||    
T  29360204 gcattgtttatgaagctccatcgtgtttgg-cctcaagtgcacgaattcagacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgca 29360302  T
Q  314 ccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatcttt 385  Q
    |||||||||||  ||||||||||| |||||||| ||  |||||||  ||||||||||||||||| |||||||    
T  29360303 ccggaggtccaccgaaaatttgctttcaaggcagtgacttttgtc-gggcacaacaattctcttatatcttt 29360373  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 212 - 389
Target Start/End: Original strand, 5716850 - 5717026
Alignment:
Q  212 tgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttg 311  Q
    |||||||| || ||||||||||||||| ||  ||| ||||||| |   |||  |||||||||||||||||| ||||| |||||||| ||||  |||||||    
T  5716850 tgggcattatttgtgaagctccatcgttttt-gacttcgagtggatgagtttagacacgcagttgtgtaaattttggggagcaaaatcggacttgggttg 5716948  T
Q  312 caccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttccta 389  Q
    ||||||| || ||  | ||||||||  ||| |||| ||||||||  || |||||||||| ||||||||||||||||||    
T  5716949 caccggaagtacaccggaaatttgcattcagggcagtggtttttaccacggcacaacaactctcttctatctttccta 5717026  T

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Target: scaffold0466 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 208 - 396
Target Start/End: Complemental strand, 8421 - 8234
Alignment:
Q  208 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgg 307  Q
    |||||||| |||||| ||||||||||| |||| | || |||| |||||||  |||| |||||| |||||||||||| |||| |||||||||||||| |      
T  8421 attttgggtattgtttgtgaagctccaacgtgct-ag-cctcaagtgcacgagttcagacacgtagttgtgtaaacattggggagcaaaaccggatatta 8324  T
Q  308 g-ttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatcc 396  Q
      ||||||| ||||||||||| ||||||||| ||| |||| | | ||||| || ||| |||||| ||||||||||||||| || ||||||    
T  8323 aattgcaccagaggtccattggaaatttgctttcatggcagttgcttttgccacggcgcaacaactctcttctatctttcgtatctatcc 8234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 216 - 385
Target Start/End: Complemental strand, 9229403 - 9229234
Alignment:
Q  216 cattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgcac 314  Q
    ||||||| |||||||||||| |||||  | |||  |||||||  |||| |||| ||| |||||||||| ||||||||||||||||||| | ||||||||     
T  9229403 cattgtttgtgaagctccattgtgttt-gcccttaagtgcacgagttcagacatgcaattgtgtaaaccttggagagcaaaaccggatattgggttgcat 9229305  T
Q  315 cggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatcttt 385  Q
    | |||||| || |||||||| || |||  | | ||||||| | || |||||||||||||||||||||||||    
T  9229304 ctgaggtctatcgaaaattttctttcagagtagtggttttggccacggcacaacaattctcttctatcttt 9229234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 25678030 - 25678208
Alignment:
Q  208 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg 306  Q
    ||||||||||||||| ||||||||||| | || |  | ||||||||||||  |||| || ||| |||||||||||| ||||| |||||||||||||  ||    
T  25678030 attttgggcattgtttgtgaagctccaacatgct--ggcctcgagtgcacgagttcagatacgtagttgtgtaaaccttggaaagcaaaaccggatattg 25678127  T
Q  307 ggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcc 387  Q
    | ||||||||||||||||  ||||||||||| |||   || ||| ||||  || | |||||||  ||||||||||||||||    
T  25678128 gattgcaccggaggtccaccgaaaatttgctttcatttcagtggctttttccacgacacaacatctctcttctatctttcc 25678208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 337
Target Start/End: Original strand, 25391406 - 25391534
Alignment:
Q  208 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg 306  Q
    |||||||||||||||  ||||||||||  ||| |  | ||||||||||||  |||| || ||  |||||||||||| |||| ||||||||||||||  ||    
T  25391406 attttgggcattgtttatgaagctccaaagtgct--ggcctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattg 25391503  T
Q  307 ggttgcaccggaggtccattgaaaatttgct 337  Q
    | ||||||||||||||||  |||||||||||    
T  25391504 gattgcaccggaggtccaccgaaaatttgct 25391534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 387
Target Start/End: Original strand, 25358412 - 25358553
Alignment:
Q  247 ctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccggaggtccattgaaaatttgctctcaaggc 345  Q
    |||||||||||  |||| || ||  |||||||||||| |||| ||||||||||||||  ||| ||||||||||||||||  ||||||||||| |||   |    
T  25358412 ctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcatttc 25358511  T
Q  346 aatggtttttgtcatggcacaacaattctcttctatctttcc 387  Q
    | ||  ||||  || |||||||||  ||||||||||||||||    
T  25358512 agtgactttttccacggcacaacatctctcttctatctttcc 25358553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 3364 - 3287
Alignment:
Q  205 ataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaac 283  Q
    |||||||||| |||| || ||||||||||||||||||  |||||||||||||| ||||| |||||| | |||| |||||    
T  3364 ataattttggacattatttgtgaagctccatcgtgtt-tgacctcgagtgcacgggttcagacacgaaattgtataaac 3287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 40709194 - 40709267
Alignment:
Q  246 cctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccgga 318  Q
    |||||||||||  ||||| |||| |||||  |||||||||||| ||||||||||||||  ||||||||||||||    
T  40709194 cctcgagtgcatgggttcagacatgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccgga 40709267  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 27049173 - 27049206
Alignment:
Q  266 acacgcagttgtgtaaactttggagagcaaaacc 299  Q
    ||||| ||||||||||||||||||||||||||||    
T  27049173 acacgtagttgtgtaaactttggagagcaaaacc 27049206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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