View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4370_high_1 (Length: 369)
Name: NF4370_high_1
Description: NF4370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4370_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 29030315 - 29030502
Alignment:
| Q |
17 |
atataacacatattag-ttcttatgtctccatcagttaatctatagaataacattaagatcggacaatagtttacaattgtaaatccaaccctatatcta |
115 |
Q |
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| T |
29030315 |
atataacacatattagcttcttatgtctccatcagttaatctatagaataacattaagatcggacaatagtttacaattgtaaatccaaccctatat--- |
29030411 |
T |
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| Q |
116 |
gcagctagcagctagcatccaaagatgaaactatttcacatatgttgtctagaaagtctttgtcaaacactttctatatgagataattaatttca |
210 |
Q |
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| T |
29030412 |
----ctagcagctagcatccaaagatgaaattatttcacatatgttgtctagaaagtctttgtcaaatactttctatatgagataattaatttca |
29030502 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 29030488 - 29030586
Alignment:
| Q |
229 |
agataactaatttcagaagtataagttcaaaagnnnnnnnn-ttaaggacataaaataattcattgatacaaagagagtttgcaacataatcattgtta |
326 |
Q |
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| T |
29030488 |
agataattaatttcagaagtataagttcgaaagaaaaaaaaattaaggacataaaataattcattgatacaaagagagtttgcaacataatcattgtta |
29030586 |
T |
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