View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4370_low_2 (Length: 261)
Name: NF4370_low_2
Description: NF4370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4370_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 31855953 - 31855713
Alignment:
| Q |
19 |
acaagaaaggtaggaagtcaggatcatagcaaaaataccgagaagagcggtactaagtaaagggtaagtacaaatggtgatatcatcattctccctttcc |
118 |
Q |
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| T |
31855953 |
acaagaaaggtaggaagtcaggatcatagcaaaaataccgaggagagcggtactaagtaaagggtaagtacaaatggtgatatcatcattctccctttcc |
31855854 |
T |
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| Q |
119 |
cttgaaaatgagttgattgtacttgtaaaataatgaggaagcttcttcccaagaactttatttttctctaattgaggtcccaccataacaaccaagatct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31855853 |
attgaaaatgagttgattgtacttgtaaaataatgaggaagcttcttcccaagaactttatttttctctaattgaggtcccaccataacaaccaagatct |
31855754 |
T |
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| Q |
219 |
gaacaattaacattggaaggcaataaagaataatctaccca |
259 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
31855753 |
gaacaattaacattggaaggcaataaagaataatataccca |
31855713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 31865845 - 31865606
Alignment:
| Q |
20 |
caagaaaggtaggaagtcaggatcatagcaaaaataccgagaagagcggtactaagtaaagggtaagtacaaatggtgatatcatcattctccctttccc |
119 |
Q |
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|||||||||||||||||||||||||| ||||||| || || || || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31865845 |
caagaaaggtaggaagtcaggatcatggcaaaaaggccaaggagggccgtactaagcaaagggtaagtacaaatggtgatatcatcattctccctttccc |
31865746 |
T |
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| Q |
120 |
ttgaaaatgagttgattgtacttgtaaaataatgaggaagcttcttcccaagaactttatttttctctaattgaggtcccaccataacaaccaagatctg |
219 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| | |||||| || | ||| |
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| T |
31865745 |
ttgaagatgagctgattgtacttgtaaaataatgaggaagcttcttcccaagaccattattttcttctaattgaggtcccacaaaaacaacaaaaacctg |
31865646 |
T |
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| Q |
220 |
aacaattaacattggaaggcaataaagaataatctaccca |
259 |
Q |
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|||||||||| ||||||||||||||| ||||| |||||| |
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| T |
31865645 |
aacaattaacggtggaaggcaataaaggataatataccca |
31865606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 108577 - 108349
Alignment:
| Q |
24 |
aaaggtaggaagtcaggatcatagcaaaaataccgagaagagcggtactaagtaaagggtaagtacaaatggtgatatcatcattctccctttcccttga |
123 |
Q |
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||||||||||||||||||| || ||||||| || |||||| | ||||||||||||||||||||||| | || ||||||||||||| ||||| || ||| |
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| T |
108577 |
aaaggtaggaagtcaggataatggcaaaaaggccaagaagaacagtactaagtaaagggtaagtacacagggcgatatcatcattcccccttgccactga |
108478 |
T |
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| Q |
124 |
aaatgagttgattgtacttgtaaaataatgaggaagcttcttcccaagaactttatttttctctaattgaggtcccaccataacaaccaagatctgaaca |
223 |
Q |
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| T |
108477 |
agaggagccagctgtgcttgtaaaataatgcggcaacttcttctcagaacccttattcttgtctaactgaggtccaaccaaaatgacaaaaagctgaaga |
108378 |
T |
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| Q |
224 |
attaacattggaaggcaataaagaataat |
252 |
Q |
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| |||||||||||||||||||||||||| |
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| T |
108377 |
agaaacattggaaggcaataaagaataat |
108349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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