View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4371-Insertion-1 (Length: 875)
Name: NF4371-Insertion-1
Description: NF4371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4371-Insertion-1 |
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| [»] chr4 (8 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 824; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 7 - 875
Target Start/End: Original strand, 46873385 - 46874253
Alignment:
| Q |
7 |
agaatgtcattttatgtgatatgatgtgcaaattacagcgattaattaaatgatttgaatgtgtgtcattttgtggttgcgttgtctattatgtttcatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46873385 |
agaatgtcattttatgtgatatgatgtgcaaattacagcgattaattaaatgatttgaatgtgtgtcattttgtggttgcgttgtctattatgtttcatg |
46873484 |
T |
|
| Q |
107 |
tttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaatgagcaattgttatattgtttatacaaca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46873485 |
tttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaatgagcaattgttatattgtttatacaaca |
46873584 |
T |
|
| Q |
207 |
aatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46873585 |
aatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggca |
46873684 |
T |
|
| Q |
307 |
tggcggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgct |
406 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46873685 |
tggtggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgct |
46873784 |
T |
|
| Q |
407 |
agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgc |
506 |
Q |
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| T |
46873785 |
agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgc |
46873884 |
T |
|
| Q |
507 |
tctgcaatagctccaatgcagccgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtccgagtcatcaat |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46873885 |
tctgcaatagctccaatgcagccgctatttaacaacacttgcacaacacttgaatgaaattatgaattttcccgtcaaccccattatccgagtcatcaat |
46873984 |
T |
|
| Q |
607 |
cattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcatttgtga |
706 |
Q |
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| T |
46873985 |
aattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcatttgtga |
46874084 |
T |
|
| Q |
707 |
tgatgaagacataagacatctgtacgtcacagccacagttgtgatcctagaccttatatttnnnnnnntcttgttcgcttgtgtgcgagtgtatgataac |
806 |
Q |
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| T |
46874085 |
tgatgaagacataagacatctgtacgtctcagccacagttgtggtcctagaccttatatttaaaaaaatcttgttcgcttgtgtgcgagtgtatgataac |
46874184 |
T |
|
| Q |
807 |
ttatatttgcatattgtgagcaaaattacaagatgattataacaattgcaactttttggtttccatgta |
875 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874185 |
ttatatttgcatattgtgagcaaaattacaagatgattataacaattgcaactttttggtttccatgta |
46874253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 603 - 875
Target Start/End: Original strand, 46891771 - 46892054
Alignment:
| Q |
603 |
caatcattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcattt |
702 |
Q |
| |
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|||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
46891771 |
caataattttgaggtacattgttcatttgcaaagttttaaattgtgaccatgccgcgatccttaatattggggtcaaatatggttaatgcagctgcattt |
46891870 |
T |
|
| Q |
703 |
gtg-----atg-atgaagacata---agacatctgtacgtcacagccacagttgtgatcctagaccttatatttnnnnnnntcttgttcgcttgtgtg-c |
792 |
Q |
| |
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||| ||| |||| || || |||||||||||| |||||||||| || || ||||||||||||| ||||||||||||||||| |
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| T |
46891871 |
gtgtgtgaatgtatgataacttatatttgcatctgtacgtctcagccacagtcatggtcgcagaccttatatttaaaaaaatcttgttcgcttgtgtgta |
46891970 |
T |
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| Q |
793 |
gagtgtatgataacttatatttgcatattgtgagc-aaaattacaagatgattataacaattgcaactttttggtttccatgta |
875 |
Q |
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| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||| ||||||||||||||| |
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| T |
46891971 |
aaatatatgataacttatatttgcatattgtgagcaaaaagtacaagatgattataacaaatgaaactgtttggtttccatgta |
46892054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 46891043 - 46891117
Alignment:
| Q |
251 |
ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagt |
325 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||| |
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| T |
46891043 |
ttaatgatcacattatctccttgttatcaaatttctgccataaatgggctgtggcatggcggactttgtgctagt |
46891117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 594
Target Start/End: Original strand, 46891392 - 46891458
Alignment:
| Q |
528 |
ccgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtc |
594 |
Q |
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| T |
46891392 |
ccgctatttaacaacacttacataatacttgaatgaaattctgaatttttccgtcaaccacattgtc |
46891458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 46891255 - 46891396
Alignment:
| Q |
368 |
acattgtgttgttaattgcggttcgcggaaaaatatgct-agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaa |
466 |
Q |
| |
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||||||||||||||||||| ||| |||||| ||| || | ||||| || | | |||| ||||||||| |||||||||||||||||||||||| |||||| |
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| T |
46891255 |
acattgtgttgttaattgcagtttgcggaataatgtggttagttccaaatatgttctgtaatagtgctatagccgctatttcacaatattttgtactaaa |
46891354 |
T |
|
| Q |
467 |
tgacttttcg-cggggcattagcgagttgttcaaatcccgct |
507 |
Q |
| |
|
| | ||| | |||||| ||| || |||||||||||||||| |
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| T |
46891355 |
taaagtttggtgggggcaatagtgatttgttcaaatcccgct |
46891396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 594
Target Start/End: Original strand, 46900046 - 46900111
Alignment:
| Q |
529 |
cgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtc |
594 |
Q |
| |
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|||||||| ||| ||||| ||||| |||||||||||||| || ||||||| |||||||||||||| |
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| T |
46900046 |
cgctatttgacatcacttacataatacttgaatgaaattctgctttttcccatcaaccccattgtc |
46900111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 18968369 - 18968310
Alignment:
| Q |
408 |
gttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaat |
467 |
Q |
| |
|
||||||||| |||| |||||||||| | |||||||||||| |||| |||||| ||||||| |
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| T |
18968369 |
gttcaaattacgctatgcaatagtgttatagccgctatttgacaacattttgtactaaat |
18968310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 467
Target Start/End: Complemental strand, 35522131 - 35522102
Alignment:
| Q |
438 |
gccgctatttcacaatattttgcactaaat |
467 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
35522131 |
gccgctatttcacaatattttgcactaaat |
35522102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 48232219 - 48232114
Alignment:
| Q |
247 |
atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta |
346 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| | | || | | |||||||||||||||||||||||| |||||| |||| |||||| |
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| T |
48232219 |
atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta |
48232120 |
T |
|
| Q |
347 |
ttatac |
352 |
Q |
| |
|
|||||| |
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|
| T |
48232119 |
ttatac |
48232114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 48237259 - 48237154
Alignment:
| Q |
247 |
atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta |
346 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| | | || | | |||||||||||||||||||||||| |||||| |||| |||||| |
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| T |
48237259 |
atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta |
48237160 |
T |
|
| Q |
347 |
ttatac |
352 |
Q |
| |
|
|||||| |
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|
| T |
48237159 |
ttatac |
48237154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 48232273 - 48232222
Alignment:
| Q |
129 |
tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctgaatg |
179 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
48232273 |
tgaatggaaaatgatttccatccttgtttataggcagagcaggttctgaatg |
48232222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 48237313 - 48237262
Alignment:
| Q |
129 |
tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctgaatg |
179 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
48237313 |
tgaatggaaaatgatttccatccttgtttataggcagagcaggttctgaatg |
48237262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 26238437 - 26238482
Alignment:
| Q |
422 |
ctgcaatagtgctttagccgctatttcacaatattttgcactaaat |
467 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||| |
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|
| T |
26238437 |
ctgcaatagtgctatagccgctatttggcaatattttgtactaaat |
26238482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 807 - 875
Target Start/End: Original strand, 27300646 - 27300715
Alignment:
| Q |
807 |
ttatatttgcatattgtgagcaaaatt-acaagatgattataacaattgcaactttttggtttccatgta |
875 |
Q |
| |
|
||||||||| ||||| || ||||||| ||||||||||||||||||||| |||| |||||||| |||||| |
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|
| T |
27300646 |
ttatatttgaatattttgtacaaaatttacaagatgattataacaattgaaactatttggttttcatgta |
27300715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 796 - 875
Target Start/End: Original strand, 27310556 - 27310637
Alignment:
| Q |
796 |
tgtatgataacttatatttgcatattgtgagcaaaa-ttacaagatgattat-aacaattgcaactttttggtttccatgta |
875 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||||| ||||||||| ||||| |||||||| |||| |||||||| |||||| |
|
|
| T |
27310556 |
tgtatgataagttatatttgaatattgtggacaaaaattacaagataattataaacaattgaaactatttggttttcatgta |
27310637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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