View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4371-Insertion-3 (Length: 784)
Name: NF4371-Insertion-3
Description: NF4371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4371-Insertion-3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 126 - 403
Target Start/End: Original strand, 25609826 - 25610106
Alignment:
| Q |
126 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaacatcaacagcctggtaataatttattcgtacttttgttta |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25609826 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaacatcaacagcctggtaataatttattcgtacttttgttta |
25609925 |
T |
|
| Q |
226 |
tatgtttctcccacatgatcatcatctcatgtattctacaacttgtttgccttgttaacaat---aaatactttgcattctacaatttggtcagtaaact |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25609926 |
tatgtttctcccacatgatcatcatctcatgcattctacaacttgtttgccttgttaataataagaaatactttgcattctacaatttggtcagtaaact |
25610025 |
T |
|
| Q |
323 |
agttgtattaatttacatgacgttcttcttagaacacattcgatatcccttagctcaacagccgagttatctactatacat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25610026 |
agttgtattaatttacatgacgttcttcttagaacacattcaatatcccttagctcaacagccgagttatctactatacat |
25610106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 452 - 784
Target Start/End: Original strand, 25610201 - 25610517
Alignment:
| Q |
452 |
aaaatcgaattctgttttgactatttgatctcaattggaaggttaccgatcccctggctttgtgaatgctcgcagggatccggcttcatatacaaaacat |
551 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25610201 |
aaaatcaaattctgttttgactatttgatctcaattggaaggtta----tcccctggctttgtgaatgctcgcagggatccggcttcatatacataacat |
25610296 |
T |
|
| Q |
552 |
gtttatttttttaacattacttcttaccaagctactatgnnnnnnnnnnnnnnnnnnnnnngtcataatctgcagaaagtaccaccggagattgttacgg |
651 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25610297 |
gtttatttttttaacattacttcttgccaagctactatgtttttttttg------------gtcataatctgcagaaggtaccaccggagattgttacgg |
25610384 |
T |
|
| Q |
652 |
atttgggtgaagagttgtggaagaatacgtttatgattctggtaggttcgtctggtgagaagtgggaagtgagtattttgaagaaagggaatgacatata |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25610385 |
atttgggtgaagagttgtggaagaatacgtttatgattctggtaggttcgtctggtgagaagtgggaagtgagtattttgaagaaagggaatgacatata |
25610484 |
T |
|
| Q |
752 |
tctacaaattggttggcaaaaatttctgataga |
784 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
25610485 |
tctacaaattggttggcagaaatttctgataga |
25610517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 613 - 780
Target Start/End: Original strand, 25615997 - 25616167
Alignment:
| Q |
613 |
gtcataatctgcagaaagtaccaccggagattgttacggatttgggtgaagagttgtggaagaatacgtttatgattctggtaggttcgtctggtgagaa |
712 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| | | || ||||| ||| | || ||||||||||| |
|
|
| T |
25615997 |
gtcataatctgcagaaagtaccaccgaagattgttatggatttgggtgaagagttttggaagaaagcatcaattattctagtatgctcttctggtgagaa |
25616096 |
T |
|
| Q |
713 |
gtgggaagtgagtattttgaagaaagggaatgacatatatctacaaa---ttggttggcaaaaatttctga |
780 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||| ||| | | || ||||||||||||| ||||||| |
|
|
| T |
25616097 |
gtgggaagttaaaattttgaagaaagcaaatgacatttatgtgcgaaactttggttggcaaaagtttctga |
25616167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 25615527 - 25615588
Alignment:
| Q |
126 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaaca |
187 |
Q |
| |
|
||||||| |||| || |||||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
25615527 |
gatggatcatgagcagcaagacaagccatcctttttcgctatcatcaaagaaggcttcaaca |
25615588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 25610117 - 25610164
Alignment:
| Q |
400 |
acattcatgaagtttggagattcatgactgtcccatcaaaatggggtg |
447 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
25610117 |
acattcatgaagtttgcagatccatgactgtccgatcaaaatggggtg |
25610164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 25609759 - 25609797
Alignment:
| Q |
7 |
agttttttcttggttaagtttctgttcgcaccttcaaaa |
45 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25609759 |
agttttttcttggttaagtttctgttcgcgccttcaaaa |
25609797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University