View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4371-Insertion-5 (Length: 306)
Name: NF4371-Insertion-5
Description: NF4371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4371-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 35021841 - 35022139
Alignment:
| Q |
8 |
gcacgtgcatggatctacactcacgtgcttcccttctacccacgcgccaaaatcaccaccatctccgtcggtaacgccttcaccgacgtttaccctgaat |
107 |
Q |
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| T |
35021841 |
gcacgtgcatggatctacactcacgtgcttcccttctacccacgcgccaaaatcaccaccatctccgtcggtaacgccttcaccgacgtttaccctgaat |
35021940 |
T |
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| Q |
108 |
ccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggcattcgtaaaatctccgtttcaacttccttctccttcgtcac |
207 |
Q |
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| T |
35021941 |
ccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggtattcgtaaaatctccgtttcaacttccttctccttcgtcac |
35022040 |
T |
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| Q |
208 |
cgccgtaacttccccttttccaccttcctccgcctcgtttcaagaaattcccggcgttaacctgatcggtccacttctccaattcctctccgatactaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022041 |
cgccgtaacttccccttttccaccttcctccgccgcgtttcaagaaattcccggcgttaacctgatcggtccacttctccaattcctctccgatactaa |
35022139 |
T |
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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 42811575 - 42811487
Alignment:
| Q |
91 |
cgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggcattcgtaaaatct |
179 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
42811575 |
cgacgtttaccctgaatccatcaacaacctcctccccgccatctccaacgttcacatctcccttcacgacctcggcatccataaaatct |
42811487 |
T |
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