View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4371_high_1_N (Length: 663)

Name: NF4371_high_1_N
Description: NF4371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4371_high_1_N
NF4371_high_1_N
[»] chr2 (4 HSPs)
chr2 (259-610)||(17447630-17447981)
chr2 (20-259)||(17446153-17446392)
chr2 (423-539)||(17445490-17445606)
chr2 (373-406)||(17445437-17445470)
[»] chr6 (18 HSPs)
chr6 (259-610)||(33414568-33414918)
chr6 (263-610)||(33395052-33395400)
chr6 (259-590)||(33258215-33258546)
chr6 (259-610)||(33278931-33279262)
chr6 (283-492)||(33293092-33293300)
chr6 (420-610)||(33269541-33269735)
chr6 (259-412)||(28872915-28873068)
chr6 (389-587)||(31564920-31565117)
chr6 (20-202)||(33413829-33414027)
chr6 (483-598)||(33384041-33384156)
chr6 (31-100)||(31565456-31565525)
chr6 (23-100)||(33351046-33351123)
chr6 (433-571)||(33406911-33407049)
chr6 (259-363)||(33384180-33384284)
chr6 (433-553)||(33280362-33280482)
chr6 (433-536)||(33395858-33395961)
chr6 (555-610)||(33293021-33293076)
chr6 (150-215)||(31565572-31565637)
[»] scaffold0428 (3 HSPs)
scaffold0428 (259-590)||(2336-2667)
scaffold0428 (259-610)||(14991-15322)
scaffold0428 (433-553)||(13771-13891)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 259 - 610
Target Start/End: Original strand, 17447630 - 17447981
Alignment:
Q  259 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17447630 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 17447729  T
Q  359 gaaagccctttccaaaactgaaggtgatcttgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggc 458  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  17447730 gaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggc 17447829  T
Q  459 agctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattc 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17447830 agctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattc 17447929  T
Q  559 aaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17447930 aaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 17447981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 17446153 - 17446392
Alignment:
Q  20 tcattaaggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcattcaaactctttacttatagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17446153 tcattaaggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcattcaaactctttacttatagt 17446252  T
Q  120 atactgatacagttgaatatttcgattaacgtgaaatttgctctataagttatgcgtatatctgggaagtggaagcttaaaggaggcaataaagttttat 219  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17446253 atactgatatagttgaatatttcgaataacttgaaatttgctctataagttatgcgtatatctgggaagtggaagcttaaaggaagcaataaagttttat 17446352  T
Q  220 gaagtctatattaggcaacaaggaaaagaagactgactca 259  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  17446353 gaagtctatattaggcaacaagcaaaagaagactgactca 17446392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 539
Target Start/End: Original strand, 17445490 - 17445606
Alignment:
Q  423 tctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaac 522  Q
    ||||||||| ||||  || |||||||| || || ||| ||||| ||| ||||||||||| |||||| ||  || ||| ||||| ||||||||||  ||||    
T  17445490 tctctcatcagctggcaataaatccggcaggctagcaactgaaagaaaaatcggtacattcattcatgactcatgcaacggtgttctaattgaagggaac 17445589  T
Q  523 tttgaaaccgactttgt 539  Q
    | ||||||| |||||||    
T  17445590 tgtgaaaccaactttgt 17445606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 17445437 - 17445470
Alignment:
Q  373 aaactgaaggtgatcttgaaaaggcgcaagcata 406  Q
    ||||||||||||||||||||||||| ||||||||    
T  17445437 aaactgaaggtgatcttgaaaaggctcaagcata 17445470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 259 - 610
Target Start/End: Complemental strand, 33414918 - 33414568
Alignment:
Q  259 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 358  Q
    |||||||||| |||| |||||||||||| | |||||| || |||||||| ||||| || ||| || |||||||||| ||||| ||||| |||||||||||    
T  33414918 attgttcaattttgtgttgtaggaaatccaaagtagtagtctcggcctctttggtcaagcaactacgagaagaaactggtgcagggatgatggactgtaa 33414819  T
Q  359 gaaagccctttccaaaactgaaggtgatcttgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggc 458  Q
    |||||| ||| |  |||| ||||| ||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||| ||    
T  33414818 gaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaa-gggtctctcatccgctgataagaaatccggaagactagc 33414720  T
Q  459 agctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattc 558  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |||||| |||||| ||||||||||||||||| |||| ||||    
T  33414719 agctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattc 33414620  T
Q  559 aaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 610  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  33414619 aaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 263 - 610
Target Start/End: Complemental strand, 33395400 - 33395052
Alignment:
Q  263 ttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaagaaa 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||  || ||||||||||  |||||||  ||||||||||||||||||||||||||    
T  33395400 ttcaatattgttttgtaggaaatcaacagtagtggtttcggcctcattatttcaacaattaagtcaagaaacaagtgctgggattatggactgtaagaaa 33395301  T
Q  363 gccctttccaaaactgaaggtgatcttgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggcagct 462  Q
    ||| |  || ||||| ||||||||||||||||||| ||| ||||||| ||       |||||||||||| ||||| ||||||||||| || || ||||||    
T  33395300 gccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaa-gggtctctcatcagctgacaagaaatccggtaggctagcagct 33395202  T
Q  463 gaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttgg--cagaagggagagattcaa 560  Q
    |||||||||||||||| ||||||| ||||||||||||||  || ||| |||||| |||||| ||||||||||||||||||  |||||| || ||||||||    
T  33395201 gaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaa 33395102  T
Q  561 ggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 610  Q
    ||||||||||| ||||||| ||||||||  |||||||| |||||||||||    
T  33395101 ggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttc 33395052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 259 - 590
Target Start/End: Complemental strand, 33258546 - 33258215
Alignment:
Q  259 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 358  Q
    ||||||||||||||  ||| ||||||||||| ||| |||| || ||||  |||||||| ||| |  |||||||||||||||| ||||| |||||||||||    
T  33258546 attgttcaatgttgggttgcaggaaatcaacggtactggtctcagcctttttggttaagcaactgcgagaagaaaccggtgcagggatgatggactgtaa 33258447  T
Q  359 gaaagccctttccaaaactgaaggtgatcttgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggc 458  Q
    |||||| | | || |||| |||||||||||||||||| |||||||||| ||||        |||||||||||||||||||||||||||||| ||||| ||    
T  33258446 gaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctca-tcaaaaagggtctctcatccgctgataagaaatccgggagactagc 33258348  T
Q  459 agctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagatt 557  Q
    ||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  |||||||||||||||||||||||| |||| |||    
T  33258347 agaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatt 33258248  T
Q  558 caaggagttggttgatgatcttgcaatgcaagt 590  Q
     |||||||||||||| |||||||||||||||||    
T  33258247 taaggagttggttgacgatcttgcaatgcaagt 33258215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 259 - 610
Target Start/End: Complemental strand, 33279262 - 33278931
Alignment:
Q  259 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 358  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||||||||  |||||||||||    
T  33279262 attgttcaatgttgttttgttggaaatcaacagtagtggtttcggcctcattcgttaaacaatt-----aagaaaccggtgctgggacgatggactgtaa 33279168  T
Q  359 gaaagccctttccaaaactgaaggtgatcttgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggc 458  Q
     || |||||| || ||||||||||| ||| ||||||||||||||||||||| ||       |||||||| ||| ||||| |||||||||||    |  ||    
T  33279167 taatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag--aaaaagggtctcttatcagctgacaagaaatccgg----caagc 33279074  T
Q  459 agctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattc 558  Q
      || |||||||||| |||||||||||||||||| ||| |||| ||| |||||||||| | |||| |||||||||||||| |||||||||  ||| ||||    
T  33279073 tactaaaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattc 33278974  T
Q  559 aaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 610  Q
    ||         |||||| ||||||||||||||||||| | ||||||||||||    
T  33278973 aa---------tgatgaacttgcaatgcaagtggctggtattccacaggttc 33278931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 283 - 492
Target Start/End: Complemental strand, 33293300 - 33293092
Alignment:
Q  283 aatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaagaaagccctttccaaaactgaagg 382  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |  |||| |||||    
T  33293300 aatcaacagtagtggtttcagactcattggataaacaattaagagaagaaaccggtgctgggatgatggactgtaagaaagctcatgctgaaacagaagg 33293201  T
Q  383 tgatcttgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacata 482  Q
    |||||||||||||| | |||||||||||||       ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  33293200 tgatcttgaaaaggtgaaagcatacctcag-aaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacata 33293102  T
Q  483 cattcacgat 492  Q
    ||||||||||    
T  33293101 cattcacgat 33293092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 420 - 610
Target Start/End: Complemental strand, 33269735 - 33269541
Alignment:
Q  420 gggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacata----cattcacgatgcacgcatcggtggtctaattga 515  Q
    |||||||||||||||||||||||| || | |||||| |||||||||| |||||||||||||||    ||||||| ||||| ||||||||| |||||||||    
T  33269735 gggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttctaattga 33269636  T
Q  516 attgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 610  Q
    | |||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  33269635 agtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 259 - 412
Target Start/End: Original strand, 28872915 - 28873068
Alignment:
Q  259 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 358  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||    
T  28872915 attgttcaatgttgtgttgcaagaaatcaacagtagtggtttcggcctcattggttaaacgattaagagaagaaaccggttccaggatgatggactgtaa 28873014  T
Q  359 gaaagccctttccaaaactgaaggtgatcttgaaaaggcgcaagcatacctcag 412  Q
    |||||||||| || |||| ||||||||||||||||||||| |||||||||||||    
T  28873015 gaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcag 28873068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 389 - 587
Target Start/End: Original strand, 31564920 - 31565117
Alignment:
Q  389 tgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 488  Q
    ||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||||||    
T  31564920 tgaaaaggcgcaagcatacctcagaaaaaa-gggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattca 31565018  T
Q  489 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgca 587  Q
    |||| |||||||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||||||| ||||||||||||||||    
T  31565019 cgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 33414027 - 33413829
Alignment:
Q  20 tcattaaggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcattca----------------a 103  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |                     
T  33414027 tcattaaggtttgaattgtttgtttcattaattcttgacatttgttacttatcatgtaaatgataataatcattaatcattgatctgtttgaagataggc 33413928  T
Q  104 actctttacttatagtatactgatacagttgaatatttcgattaacgtgaaatttgctctataagttatgcgtatatctgggaagtggaagcttaaagg 202  Q
    ||||||| |||||||||| |||  ||||||||||||||||| ||  || |||| ||||| |||||||||||||||||||  ||||||||||||||||||    
T  33413927 actctttgcttatagtatgctggcacagttgaatatttcgaatattgtaaaatatgctcgataagttatgcgtatatctaagaagtggaagcttaaagg 33413829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 483 - 598
Target Start/End: Complemental strand, 33384156 - 33384041
Alignment:
Q  483 cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgca 582  Q
    ||||||| || ||| |||||||| |||||||||| |||||| | ||||||||||||| |||||||| |||| | | ||||||||||||||||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  583 atgcaagtggctgctt 598  Q
    ||||||||||||||||    
T  33384056 atgcaagtggctgctt 33384041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 31565456 - 31565525
Alignment:
Q  31 tgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcatt 100  Q
    |||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||| |||||||    
T  31565456 tgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcatt 31565525  T

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Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 33351123 - 33351046
Alignment:
Q  23 ttaaggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcatt 100  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||| ||  |||||| ||||||||||||||||||||    
T  33351123 ttaaggtttgaattgtttgtttcattaattcttgacatttgttactactattgtaaaggataataatcattaatcatt 33351046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 433 - 571
Target Start/End: Complemental strand, 33407049 - 33406911
Alignment:
Q  433 gctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccg 532  Q
    ||||||||||||||| ||||||| ||||| || |||| || ||||||||| ||| || ||  | ||||  ||| | |||||| | |||||| ||||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatatattgacaatttatgcattagtgttataattgtagtgaactatgaaaccg 33406950  T
Q  533 actttgttggcagaagggagagattcaaggagttggttg 571  Q
    |||||||||||||||| |||  |||| ||||||||||||    
T  33406949 actttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 259 - 363
Target Start/End: Complemental strand, 33384284 - 33384180
Alignment:
Q  259 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 358  Q
    |||| |||||||||||||| ||||||||||| |||||||| || ||||| |||||||| ||| |   ||||||||| ||||| | ||| |||||||||||    
T  33384284 attgctcaatgttgttttgcaggaaatcaacggtagtggtctcagcctctttggttaagcaactgcaagaagaaacaggtgcagagatgatggactgtaa 33384185  T
Q  359 gaaag 363  Q
    |||||    
T  33384184 gaaag 33384180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 433 - 553
Target Start/End: Complemental strand, 33280482 - 33280362
Alignment:
Q  433 gctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccg 532  Q
    ||||| ||||||||||||||| |   |||||||||| ||||| |||| |||||||||||| ||||||| |||  |||| ||||| | |||| ||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  533 actttgttggcagaagggaga 553  Q
    ||||| |||||||||| ||||    
T  33280382 acttttttggcagaagtgaga 33280362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 433 - 536
Target Start/End: Complemental strand, 33395961 - 33395858
Alignment:
Q  433 gctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccg 532  Q
    ||||||||||||||  |||||||  |||| ||||||| || ||||||||| |||||| || || ||||  ||| |||| |||||||||||| ||||||||    
T  33395961 gctgataagaaatcgagaagactaacagccgaaggaaaaaccggtacataaattcacaattcatgcattagtgttctagttgaattgaactatgaaaccg 33395862  T
Q  533 actt 536  Q
    ||||    
T  33395861 actt 33395858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 610
Target Start/End: Complemental strand, 33293076 - 33293021
Alignment:
Q  555 attcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 610  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||  |||||||    
T  33293076 attcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttc 33293021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 31565572 - 31565637
Alignment:
Q  150 gtgaaatttgctctataagttatgcgtatatctgggaagtggaagcttaaaggaggcaataaagtt 215  Q
    ||||||||| ||||||||||||||| |||||||   ||||| |||||||||||| || ||||||||    
T  31565572 gtgaaatttactctataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagtt 31565637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 140; Significance: 5e-73; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 259 - 590
Target Start/End: Complemental strand, 2667 - 2336
Alignment:
Q  259 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 358  Q
    ||||||||||||||  ||| ||||||||||| ||| |||| || ||||  |||||||| ||| |  |||||||||||||||| ||||| |||||||||||    
T  2667 attgttcaatgttgggttgcaggaaatcaacggtactggtctcagcctttttggttaagcaactgcgagaagaaaccggtgcagggatgatggactgtaa 2568  T
Q  359 gaaagccctttccaaaactgaaggtgatcttgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggc 458  Q
    |||||| | | || |||| |||||||||||||||||| |||||||||| ||||        |||||||||||||||||||||||||||||| ||||| ||    
T  2567 gaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctca-tcaaaaagggtctctcatccgctgataagaaatccgggagactagc 2469  T
Q  459 agctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagatt 557  Q
    ||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  |||||||||||||||||||||||| |||| |||    
T  2468 agaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatt 2369  T
Q  558 caaggagttggttgatgatcttgcaatgcaagt 590  Q
     |||||||||||||| |||||||||||||||||    
T  2368 taaggagttggttgacgatcttgcaatgcaagt 2336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 259 - 610
Target Start/End: Original strand, 14991 - 15322
Alignment:
Q  259 attgttcaatgttgttttgtaggaaatcaacagtagtggtttcggcctcattggttaaacaattaagagaagaaaccggtgctgggattatggactgtaa 358  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||||||||  |||||||||||    
T  14991 attgttcaatgttgttttgttggaaatcaacagtagtggtttcggcctcattcgttaaacaatt-----aagaaaccggtgctgggacgatggactgtaa 15085  T
Q  359 gaaagccctttccaaaactgaaggtgatcttgaaaaggcgcaagcatacctcagnnnnnnngggtctctcatccgctgataagaaatccggaagactggc 458  Q
     || |||||| || ||||||||||| ||| ||||||||||||||||||||| ||       |||||||| ||| ||||| |||||||||||    |  ||    
T  15086 taatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag--aaaaagggtctcttatcagctgacaagaaatccgg----caagc 15179  T
Q  459 agctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattc 558  Q
      || |||||||||| |||||||||||||||||| ||| |||| ||| |||||||||| | |||| |||||||||||||| |||||||||  ||| ||||    
T  15180 tactaaaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattc 15279  T
Q  559 aaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 610  Q
    ||         |||||| ||||||||||||||||||| | ||||||||||||    
T  15280 aa---------tgatgaacttgcaatgcaagtggctggtattccacaggttc 15322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 433 - 553
Target Start/End: Original strand, 13771 - 13891
Alignment:
Q  433 gctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccg 532  Q
    ||||| ||||||||||||||| |   |||||||||| ||||| |||| |||||||||||| ||||||| |||  |||| ||||| | |||| ||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  533 actttgttggcagaagggaga 553  Q
    ||||| |||||||||| ||||    
T  13871 acttttttggcagaagtgaga 13891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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