View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4371_high_4 (Length: 381)
Name: NF4371_high_4
Description: NF4371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4371_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 29 - 324
Target Start/End: Complemental strand, 46873391 - 46873096
Alignment:
| Q |
29 |
acattctacacagcatctagaaaattnnnnnnnnnnntattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatc |
128 |
Q |
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| T |
46873391 |
acattctacacagcatctagaaaattaaaaaaaaacatattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatc |
46873292 |
T |
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| Q |
129 |
aaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtctt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46873291 |
aaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtctt |
46873192 |
T |
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| Q |
229 |
ccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
324 |
Q |
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| T |
46873191 |
ccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
46873096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 46890766 - 46890593
Alignment:
| Q |
66 |
tattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaa |
165 |
Q |
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|||||||||| ||| ||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46890766 |
tattttatataattaaacaaaataaagcaatagaattatatgataaaaccaaaaccaataagcaaaatgagttattgttaccttcttcaccatgagcaaa |
46890667 |
T |
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| Q |
166 |
gtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgc |
239 |
Q |
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| T |
46890666 |
gagacagttcattccaaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
46890593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 46890502 - 46890418
Alignment:
| Q |
240 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
324 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacag |
46890418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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