View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4372-Insertion-2 (Length: 1208)

Name: NF4372-Insertion-2
Description: NF4372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4372-Insertion-2
NF4372-Insertion-2
[»] chr1 (45 HSPs)
chr1 (4-1055)||(6524886-6525939)
chr1 (497-707)||(6497714-6497924)
chr1 (503-705)||(6515064-6515266)
chr1 (503-707)||(6510674-6510878)
chr1 (484-705)||(6503035-6503256)
chr1 (857-1012)||(6511013-6511168)
chr1 (849-1001)||(6498066-6498218)
chr1 (858-1004)||(47711873-47712019)
chr1 (503-710)||(47758450-47758657)
chr1 (858-1004)||(47744388-47744534)
chr1 (503-707)||(47711552-47711756)
chr1 (505-676)||(47774849-47775020)
chr1 (858-1004)||(47716624-47716770)
chr1 (858-1004)||(47758771-47758917)
chr1 (857-1055)||(6503393-6503593)
chr1 (304-413)||(47775326-47775435)
chr1 (868-1004)||(47774547-47774683)
chr1 (857-1012)||(6515436-6515591)
chr1 (557-696)||(47770939-47771078)
chr1 (304-413)||(47771228-47771337)
chr1 (503-707)||(47716303-47716507)
chr1 (292-415)||(6497463-6497586)
chr1 (252-410)||(47700854-47701012)
chr1 (860-1004)||(47770639-47770783)
chr1 (286-415)||(6510440-6510569)
chr1 (503-679)||(47744067-47744243)
chr1 (310-413)||(47758072-47758175)
chr1 (313-407)||(6502843-6502937)
chr1 (313-413)||(47743674-47743774)
chr1 (313-395)||(47627678-47627760)
chr1 (313-410)||(6514866-6514963)
chr1 (531-647)||(47701328-47701444)
chr1 (4-119)||(6502551-6502666)
chr1 (4-119)||(6514569-6514684)
chr1 (568-647)||(47640634-47640713)
chr1 (310-410)||(47711194-47711294)
chr1 (564-646)||(47607328-47607410)
chr1 (655-712)||(47627152-47627209)
chr1 (554-679)||(47678827-47678952)
chr1 (4-65)||(47771524-47771585)
chr1 (337-389)||(47593658-47593710)
chr1 (336-380)||(47679177-47679221)
chr1 (658-740)||(47568208-47568290)
chr1 (910-971)||(47689806-47689867)
chr1 (4-77)||(47775664-47775737)
[»] scaffold0341 (7 HSPs)
scaffold0341 (503-707)||(12354-12558)
scaffold0341 (497-705)||(4728-4935)
scaffold0341 (857-1012)||(12694-12848)
scaffold0341 (894-1055)||(5112-5275)
scaffold0341 (286-415)||(12120-12249)
scaffold0341 (313-407)||(4522-4616)
scaffold0341 (4-119)||(4229-4344)
[»] chr5 (14 HSPs)
chr5 (504-707)||(28828946-28829149)
chr5 (505-707)||(28859966-28860168)
chr5 (503-707)||(28854606-28854810)
chr5 (860-1001)||(27369137-27369278)
chr5 (289-407)||(28859739-28859857)
chr5 (505-696)||(27368599-27368790)
chr5 (505-707)||(28874536-28874738)
chr5 (860-1055)||(28854962-28855159)
chr5 (299-413)||(27368303-27368417)
chr5 (310-410)||(28828672-28828772)
chr5 (286-404)||(28854349-28854467)
chr5 (860-1001)||(28860321-28860462)
chr5 (860-1012)||(28829285-28829437)
chr5 (868-1012)||(28874899-28875043)
[»] chr8 (2 HSPs)
chr8 (503-679)||(11224785-11224961)
chr8 (313-413)||(11225254-11225354)
[»] chr7 (5 HSPs)
chr7 (331-413)||(20167898-20167980)
chr7 (321-413)||(20285109-20285201)
chr7 (333-389)||(20264209-20264265)
chr7 (321-413)||(20294826-20294918)
chr7 (322-413)||(20303867-20303958)
[»] chr2 (4 HSPs)
chr2 (302-372)||(2690505-2690575)
chr2 (340-413)||(2716879-2716952)
chr2 (340-413)||(2723502-2723575)
chr2 (340-413)||(2745332-2745405)
[»] chr4 (1 HSPs)
chr4 (350-411)||(36437521-36437582)


Alignment Details
Target: chr1 (Bit Score: 1014; Significance: 0; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 1014; E-Value: 0
Query Start/End: Original strand, 4 - 1055
Target Start/End: Complemental strand, 6525939 - 6524886
Alignment:
Q  4 aacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatgtgggatctataacatttgttggtgacccatctctccaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525939 aacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatgtgggatctataacatttgttggtgacccatctctccaa 6525840  T
Q  104 tttctccatacctacaagaatatttccatatgcaaaatgcaagttagattacacttctagagtaatgtaatcttacacattatcttccaattccatactt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525839 tttctccatacctacaagaatatttccatatgcaaaatgcaagttagattacacttctagagtaatgtaatcttacacattatcttccaattccatactt 6525740  T
Q  204 ctattgatatggaagaaggtatgacggaagaaattaacggactactttacttacaaagctgagtaaatactccgtactagttccatgacgaatgccactg 303  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525739 ctattgatatggaagaagatatgactgaagaaattaacggactactttacttacaaagctgagtaaatactccgtactagttccatgacgaatgccactg 6525640  T
Q  304 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525639 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 6525540  T
Q  404 atccactgcaaacaatacaaataattattctcaactaaatagaatctttccacaatcatgcatcttcggtcaatttatagcaactaatacttcttttgca 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6525539 atccactgcaaacaatacaaataattattctcaactaaatagaatctttccacaatcatgcatcttcggtcaatttatagcaattaatacttcttttgca 6525440  T
Q  504 tacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctct 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525439 tacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctct 6525340  T
Q  604 tcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatga 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525339 tcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatga 6525240  T
Q  704 ttttataccttctgttccagtttaattgtgttctcttggtttgatctgcgtagaaacatgaaaaacaaatatgaatcgtcgaactatgtgattaagttat 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6525239 ttttataccttctgttccagtttaattgtgttctcttggtttgatctgcgtagaaacataaaaaacaaatatgaatcgtcgaactatgtgattaagttat 6525140  T
Q  804 cttcaatcacaacaaaataaatagagatacgtttcagttcaacatatattaacacctaccaaaaatgaagtaatcgaggctcttattctgaacaaattca 903  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  6525139 cttcaatcacaacaaaataaatagagatacgtttcagttcaacatatattaaaacctaccaaaaaggaagtaatcgaggctcttattctgaacaaattca 6525040  T
Q  904 tatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaagtttagccactaaaactacttcattcttaaatt 1003  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525039 tatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaagtttagccactaaaactacttcattcttaaatt 6524940  T
Q  1004 ctaaatct-cttgg-cagaatccctcgacaaccttttgacaccaatctcttgtc 1055  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  6524939 ctaaatctccttggccagaatccctcgacaaccttttgacaccaatctcttgtc 6524886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 497 - 707
Target Start/End: Original strand, 6497714 - 6497924
Alignment:
Q  497 ttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggatt 596  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| | ||||||||||||    
T  6497714 ttttgaatacttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggatt 6497813  T
Q  597 catctcttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacct 696  Q
    ||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||| |||||    
T  6497814 catttcttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaatacct 6497913  T
Q  697 acaatgatttt 707  Q
    | |||||||||    
T  6497914 aaaatgatttt 6497924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 1e-69
Query Start/End: Original strand, 503 - 705
Target Start/End: Original strand, 6515064 - 6515266
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||      
T  6515064 atacttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatccg 6515163  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg 702  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||| ||||||||| |||||| ||||    
T  6515164 tttatctaagagaatattgcttgctttgagatcacgatgaataacacgcactcgagaatcctcatggaggtaaagaatgcctcgagcaatacctaaaatg 6515263  T
Q  703 att 705  Q
    |||    
T  6515264 att 6515266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 9e-64
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 6510674 - 6510878
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||| | |  ||| || || |||||||||||||| ||||||||||||||||||||    
T  6510674 atacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctc 6510773  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg 702  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||| ||||||||| |||||| ||||    
T  6510774 ttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaatacctaaaatg 6510873  T
Q  703 atttt 707  Q
    |||||    
T  6510874 atttt 6510878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 484 - 705
Target Start/End: Original strand, 6503035 - 6503256
Alignment:
Q  484 caactaatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctg 583  Q
    |||| ||||||| ||||| || ||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| ||||| |||||||||||||| |    
T  6503035 caaccaatactttttttgaatgcttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcag 6503134  T
Q  584 ctatcttaggattcatctcttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcc 683  Q
    |||||||||||||||| | |||||| ||||||||||| |||||||||||||| | |||||||| ||| |  ||||||||||  |||||||| ||||| ||    
T  6503135 ctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggtatagaatgcc 6503234  T
Q  684 tcgagcagtacctacaatgatt 705  Q
    ||||||| |||||| |||||||    
T  6503235 tcgagcaatacctaaaatgatt 6503256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 857 - 1012
Target Start/End: Original strand, 6511013 - 6511168
Alignment:
Q  857 acctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaa 956  Q
    ||||||||||||| |||||||| || || ||||| |||||||| ||||||| |||||||||||||||||||||||  |||||||| ||||  || |||||    
T  6511013 acctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaa 6511112  T
Q  957 gtttcgatgttgaagtttagccactaaaactacttcattcttaaattctaaatctc 1012  Q
     ||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  6511113 atttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctc 6511168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 849 - 1001
Target Start/End: Original strand, 6498066 - 6498218
Alignment:
Q  849 atattaacacctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagc 948  Q
    ||||||| || ||||||||||||| |||||||| || || || |||||||||||||||||||||| |||||||||||||||||   ||||||| |||||     
T  6498066 atattaaaacttaccaaaaatgaaataatcgagacttttgttttgaacaaattcatatacaagtactctttctcttccttctagtgagaaaccgagtagt 6498165  T
Q  949 ctaactaagtttcgatgttgaagtttagccactaaaactacttcattcttaaa 1001  Q
    |||||||| ||||| |||||||| |||||||| |||| ||| |||||||||||    
T  6498166 ctaactaaatttcggtgttgaagcttagccaccaaaagtacctcattcttaaa 6498218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 858 - 1004
Target Start/End: Original strand, 47711873 - 47712019
Alignment:
Q  858 cctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaag 957  Q
    ||||||||| || || ||||| || || |||||| ||||||||||||| | ||| | ||||||||||||||||| ||| ||||||||||| ||||||||     
T  47711873 cctaccaaatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa 47711972  T
Q  958 tttcgatgttgaagtttagccactaaaactacttcattcttaaattc 1004  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||||    
T  47711973 tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattc 47712019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 503 - 710
Target Start/End: Original strand, 47758450 - 47758657
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    |||||||||| ||||| || ||| | ||||||||| | |||||||  || |||  ||  ||||| ||||| |||||||||| ||| |||||||||| ||     
T  47758450 atacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaactt 47758549  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg 702  Q
    ||| ||||||||||| || || ||||| ||||||||||| |||||||| ||  |||||||||| |||||||||||||  |||| |||| ||||| |||||    
T  47758550 ttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatg 47758649  T
Q  703 attttata 710  Q
    ||||||||    
T  47758650 attttata 47758657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 858 - 1004
Target Start/End: Original strand, 47744388 - 47744534
Alignment:
Q  858 cctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaag 957  Q
    ||||||||| || || ||||| || || |||||  ||||| ||||||| ||||| | ||||||||||||||||| ||| ||||||||||| ||||||||     
T  47744388 cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa 47744487  T
Q  958 tttcgatgttgaagtttagccactaaaactacttcattcttaaattc 1004  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||||    
T  47744488 tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattc 47744534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 47711552 - 47711756
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    |||||||||| ||||| || ||| | ||||||||| | |||||||| || | |  ||  ||||| || |||||||| |||| ||| |||||||||| ||     
T  47711552 atacttactatgttccaacgattttatttgtatttacttgagtttgatcgataagaagtagtctggctatgccaaagtctgatattttaggattcaactt 47711651  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg 702  Q
    |||||| |||||||| || |||||||| ||||||||||| |||||||| ||  ||||||||||||||||||||||||  |||| |||  ||||| |||||    
T  47711652 ttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaaggtaaagaaggcctctagctatacctccaatg 47711751  T
Q  703 atttt 707  Q
    |||||    
T  47711752 atttt 47711756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 505 - 676
Target Start/End: Complemental strand, 47775020 - 47774849
Alignment:
Q  505 acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctctt 604  Q
    |||||||||||||| |||||| |  |||||||| | |||||||| || | | |||||| ||| ||||  |||||||| | ||| |||||||||||| | |    
T  47775020 acttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcggatattttaggattcatcccgt 47774921  T
Q  605 catctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaa 676  Q
    | ||||||||||||||||| |||||||||||||| || ||||| || || ||||||||||||||||| ||||    
T  47774920 cgtctaagagaatattgctagctttgagatcacggtgtataatgcggaggcgagaatcctcatgaagataaa 47774849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 858 - 1004
Target Start/End: Original strand, 47716624 - 47716770
Alignment:
Q  858 cctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaag 957  Q
    ||||||||| || || ||||| || || |||||  ||||||||||||| | ||| | ||||||||||||||||| ||| ||||||||||| | ||||||     
T  47716624 cctaccaaatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatctttctcttccttctagacaaaaaccaagtagtcaaactaaa 47716723  T
Q  958 tttcgatgttgaagtttagccactaaaactacttcattcttaaattc 1004  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||||    
T  47716724 tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattc 47716770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 858 - 1004
Target Start/End: Original strand, 47758771 - 47758917
Alignment:
Q  858 cctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaag 957  Q
    ||||||||| || || ||||| || || |||||| ||||| ||||||| ||||| | ||||||||||||||| | ||| ||||||||||| | ||||||     
T  47758771 cctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaa 47758870  T
Q  958 tttcgatgttgaagtttagccactaaaactacttcattcttaaattc 1004  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||||    
T  47758871 tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattc 47758917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 857 - 1055
Target Start/End: Original strand, 6503393 - 6503593
Alignment:
Q  857 acctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaa 956  Q
    ||||||||||||| |||||||| || || |||||   |||||| ||||||||||| |||||||||||||||||||  || ||||| ||||  |||||||     
T  6503393 acctaccaaaaataaagtaatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactag 6503492  T
Q  957 gtttcgatgttgaagtttagccactaaaactacttcattcttaaattctaaatctcttgg--cagaatccctcgacaaccttttgacaccaatctcttgt 1054  Q
     ||||  |||||||||||||| |||||||  |||||||||||||| ||| |||||| | |  |||||| | | || |||||||||||| ||| |||||||    
T  6503493 atttctgtgttgaagtttagcaactaaaaacacttcattcttaaactctgaatctccttgtccagaattcattgataaccttttgacagcaacctcttgt 6503592  T
Q  1055 c 1055  Q
    |    
T  6503593 c 6503593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 47775435 - 47775326
Alignment:
Q  304 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 403  Q
    ||||| || ||||||| ||||||||||| |||||| || |||||||| ||||| || || || |||||||||||||||||||||||||| ||||||||||    
T  47775435 tttttatgaccacttaaaatctcaagaaccaatactccgaaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatat 47775336  T
Q  404 atccactgca 413  Q
    ||||||||||    
T  47775335 atccactgca 47775326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 868 - 1004
Target Start/End: Complemental strand, 47774683 - 47774547
Alignment:
Q  868 atgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgtt 967  Q
    ||||||||||| || || |||||   |||| ||||||| | ||| ||| ||||||| ||||||| || ||||||||||||||||||||| ||||||||||    
T  47774683 atgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttctctcccttctaaactgaaaccaagtagcctaactaaatttcgatgtt 47774584  T
Q  968 gaagtttagccactaaaactacttcattcttaaattc 1004  Q
    ||||||| || ||||||| ||||||||| ||||||||    
T  47774583 gaagtttggctactaaaagtacttcatttttaaattc 47774547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 857 - 1012
Target Start/End: Original strand, 6515436 - 6515591
Alignment:
Q  857 acctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaa 956  Q
    ||||||||||||| |||||||| || || ||||| |||||||| || |||| |||||||||||| || |||||||  |||||||| ||||  ||||||||    
T  6515436 acctaccaaaaataaagtaatcaagacttttattatgaacaaactcgtatataagtagtctttcactcccttctaggcagaaaccgagtaatctaactaa 6515535  T
Q  957 gtttcgatgttgaagtttagccactaaaactacttcattcttaaattctaaatctc 1012  Q
     ||||| ||||||||||||||||  ||||  || ||||||||||| |||| |||||    
T  6515536 atttcggtgttgaagtttagccaggaaaaacacctcattcttaaactctagatctc 6515591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 557 - 696
Target Start/End: Complemental strand, 47771078 - 47770939
Alignment:
Q  557 caaacagtctagccatgccaaaatctgctatcttaggattcatctcttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccg 656  Q
    |||||| ||| ||||  |||||||| | |||||||||||||||||| || ||||||||||| ||||||||||||| |||||| || ||||| || || ||    
T  47771078 caaacaatcttgccaatccaaaatcagatatcttaggattcatctcatcgtctaagagaatgttgcttgctttgatatcacggtgtataattcgtaggcg 47770979  T
Q  657 agaatcctcatgaaggtaaagaattcctcgagcagtacct 696  Q
    ||||||||||||||| |||||||  |||||| || |||||    
T  47770978 agaatcctcatgaagataaagaagacctcgaacaatacct 47770939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 47771337 - 47771228
Alignment:
Q  304 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 403  Q
    ||||| || ||||||||||||||||||| |||||| ||||| ||||| ||||| || || || |||||||||||||||||||||||||| |||||||| |    
T  47771337 tttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgt 47771238  T
Q  404 atccactgca 413  Q
    |||| |||||    
T  47771237 atccgctgca 47771228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 47716303 - 47716507
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    |||||||||| ||||| || ||| | ||||||||| | |||||||| || |||  ||  ||||| || || |||||||||| ||| ||||||||||  |     
T  47716303 atacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcgataccaaaatctgatattttaggattcaattt 47716402  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg 702  Q
    ||| ||||||||||| || |  ||||| ||||||||||| |||||||| ||  ||||||||| ||||||||||||||  |||| |||| ||||| |||||    
T  47716403 ttcgtctaagagaatgttacccgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaaggcctctagcaatacctccaatg 47716502  T
Q  703 atttt 707  Q
    |||||    
T  47716503 atttt 47716507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 6497463 - 6497586
Alignment:
Q  292 cgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatact 391  Q
    |||||||||||||||||    |||||||  || ||||||| ||||| ||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| |    
T  6497463 cgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaatacatccgacttcactgaaaattgtccgtgcatagcatatt 6497562  T
Q  392 ccggtgccatatatccactgcaaa 415  Q
    | ||||||||||||||||| ||||    
T  6497563 caggtgccatatatccactacaaa 6497586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 252 - 410
Target Start/End: Original strand, 47700854 - 47701012
Alignment:
Q  252 acttacaaagctgagtaaatactccgtactagttccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaat 351  Q
    |||||||||||| ||||||| ||||  |||   ||||||| ||||||||||  | || ||||||||||||||||| ||||  | ||| |||||||||||     
T  47700854 acttacaaagctaagtaaatcctcctgactctgtccatgaagaatgccactaatcttttggccacttataatctctagaactagtacgccaaaactaaaa 47700953  T
Q  352 acatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccact 410  Q
    ||||| || || |||||||||||||||  ||||||||| ||  ||||||||||||||||    
T  47700954 acatccgatttgactgaaaattgtccaaacattgcatattcgagtgccatatatccact 47701012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 860 - 1004
Target Start/End: Complemental strand, 47770783 - 47770639
Alignment:
Q  860 taccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtt 959  Q
    ||||||| ||||||||||| || || |||||   |||||||||||| | ||| |||||||| || ||||||| || ||||||||| || |||||||| ||    
T  47770783 taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagaagtctaactaaatt 47770684  T
Q  960 tcgatgttgaagtttagccactaaaactacttcattcttaaattc 1004  Q
    |||||||||||| || || ||||| | ||||||||| ||||||||    
T  47770683 tcgatgttgaagcttggctactaataatacttcatttttaaattc 47770639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 286 - 415
Target Start/End: Original strand, 6510440 - 6510569
Alignment:
Q  286 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 385  Q
    |||| ||||||||||||||||||    ||||||| ||| || | || ||||| |||||||||||| ||||| || || |||||||| ||||| ||||||     
T  6510440 ccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcatta 6510539  T
Q  386 catactccggtgccatatatccactgcaaa 415  Q
    ||||||| ||||||||||||||||| ||||    
T  6510540 catactcaggtgccatatatccactacaaa 6510569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 503 - 679
Target Start/End: Original strand, 47744067 - 47744243
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    |||||||||| ||||| || ||| | ||||||||  | |||||||| || |||  ||  ||||| || || |||||||| | ||| |||||||||| ||     
T  47744067 atacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt 47744166  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaa 679  Q
    ||| || |||||||| || |||||||| ||||||||||| |||||||| ||  ||||||||| ||||||||||||||    
T  47744167 ttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaa 47744243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 310 - 413
Target Start/End: Original strand, 47758072 - 47758175
Alignment:
Q  310 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 409  Q
    ||||||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || |||||||||||||    
T  47758072 tggccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccac 47758171  T
Q  410 tgca 413  Q
    ||||    
T  47758172 tgca 47758175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 313 - 407
Target Start/End: Original strand, 6502843 - 6502937
Alignment:
Q  313 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 407  Q
    ||||||| ||| ||||||| ||||| ||||||||| || |||||||| || || ||||||||||| |||||| ||||||| ||||||||||||||    
T  6502843 ccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatcc 6502937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 47743674 - 47743774
Alignment:
Q  313 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgc 412  Q
    |||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || ||||||||||||||||    
T  47743674 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 47743773  T
Q  413 a 413  Q
    |    
T  47743774 a 47743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 47627760 - 47627678
Alignment:
Q  313 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccgg 395  Q
    ||||| |||||||| |||| ||  || ||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||    
T  47627760 ccactaataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccgg 47627678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 6514866 - 6514963
Alignment:
Q  313 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccact 410  Q
    ||||||| ||| |||||||  |||| |||||||||||| |||||||| ||   |||||||||||||||| | |||||||| ||||||||||| |||||    
T  6514866 ccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccact 6514963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 531 - 647
Target Start/End: Original strand, 47701328 - 47701444
Alignment:
Q  531 tgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctcttcatctaagagaatattgcttgctttg 630  Q
    ||||||| | |||||||| ||||||  ||  || || ||||| |||||||||| ||| ||||||||||| | |||||| |||||||| || ||||||||     
T  47701328 tgtatttacttgagtttgatccacaagaattagcctggccataccaaaatctgatattttaggattcattttttcatccaagagaatgttacttgcttta 47701427  T
Q  631 agatcacgatgaataat 647  Q
    ||||||||||| |||||    
T  47701428 agatcacgatgtataat 47701444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 6502551 - 6502666
Alignment:
Q  4 aacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatgtgggatctataacatttgttggtgacccatctctccaa 103  Q
    |||||||||||| ||||| ||||| ||||| | |||||| ||   |||||||||||||||||| |  ||||| | ||||||||  | ||| |||||||||    
T  6502551 aacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaa 6502650  T
Q  104 tttctccatacctaca 119  Q
    ||||||||| ||||||    
T  6502651 tttctccatgcctaca 6502666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 6514569 - 6514684
Alignment:
Q  4 aacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatgtgggatctataacatttgttggtgacccatctctccaa 103  Q
    |||||||||||| ||||| ||||| ||||||||||| || || | ||| |||||||||||||| |||||||| | ||||| ||  | ||| ||  |||||    
T  6514569 aacacaaagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttgctgcagtcccctccttccaa 6514668  T
Q  104 tttctccatacctaca 119  Q
    ||||||||| ||||||    
T  6514669 tttctccatgcctaca 6514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 568 - 647
Target Start/End: Complemental strand, 47640713 - 47640634
Alignment:
Q  568 gccatgccaaaatctgctatcttaggattcatctcttcatctaagagaatattgcttgctttgagatcacgatgaataat 647  Q
    ||||| ||||||||||  ||||| || ||||| | ||||||||| |||| |||||| |||||||||||||||||||||||    
T  47640713 gccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataat 47640634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 410
Target Start/End: Original strand, 47711194 - 47711294
Alignment:
Q  310 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 409  Q
    ||||||||||||||||| | ||  ||||| ||||||||||| |||||||| || || ||||||| ||||  | || ||||||| || |||||||||||||    
T  47711194 tggccacttataatctccaaaactaatactccaaaactaaaaacatctgattttaccgaaaattctccaaaccttacatactcgggagccatatatccac 47711293  T
Q  410 t 410  Q
    |    
T  47711294 t 47711294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 564 - 646
Target Start/End: Complemental strand, 47607410 - 47607328
Alignment:
Q  564 tctagccatgccaaaatctgctatcttaggattcatctcttcatctaagagaatattgcttgctttgagatcacgatgaataa 646  Q
    ||||||||||||||||||||  || ||||||||||| | ||||||||| | |||||| || | ||| ||||||||||| ||||    
T  47607410 tctagccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataa 47607328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 655 - 712
Target Start/End: Complemental strand, 47627209 - 47627152
Alignment:
Q  655 cgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatgattttatacc 712  Q
    |||||||| ||||||||||||||||||||||||||| | |||  |||||| |||||||    
T  47627209 cgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatattatacc 47627152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 554 - 679
Target Start/End: Complemental strand, 47678952 - 47678827
Alignment:
Q  554 catcaaacagtctagccatgccaaaatctgctatcttaggattcatctcttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcag 653  Q
    ||||||||| ||| || || ||||||||||  || || || ||||||||||||||||  | ||| || |||| ||||||||||||||||| |||  | |     
T  47678952 catcaaacaatcttgcgattccaaaatctgtaatttttgggttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaacaatttgtaa 47678853  T
Q  654 ccgagaatcctcatgaaggtaaagaa 679  Q
     |||||||| |||||||| |||||||    
T  47678852 tcgagaatcttcatgaagataaagaa 47678827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 47771585 - 47771524
Alignment:
Q  4 aacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatg 65  Q
    |||||||||||| ||||| |||||||||||||||||||| ||  |||||  |||||||||||    
T  47771585 aacacaaagtaagccaatatggatgcatctcattatttcatttgctgaaatattgtttaatg 47771524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 47593710 - 47593658
Alignment:
Q  337 acaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 389  Q
    |||||||||||||| ||||| |||||| ||||||| |||||| ||||||||||    
T  47593710 acaccaaaactaaaaacatccgacttctctgaaaagtgtccaagcattgcata 47593658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 47679221 - 47679177
Alignment:
Q  336 tacaccaaaactaaatacatctgacttcactgaaaattgtccatg 380  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  47679221 tacaccaaaactaaacacatctgacttaactgagaattgtccatg 47679177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 658 - 740
Target Start/End: Complemental strand, 47568290 - 47568208
Alignment:
Q  658 gaatcctcatgaaggtaaagaattcctcgagcagtacctacaatgattttataccttctgttccagtttaattgtgttctctt 740  Q
    ||||||||||| || |||||||||||||||||| | ||| |||| || || | |||| ||| ||| ||||||||| |||||||    
T  47568290 gaatcctcatggagataaagaattcctcgagcaattcctccaataatcttgtgccttttgtaccaatttaattgtcttctctt 47568208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 910 - 971
Target Start/End: Complemental strand, 47689867 - 47689806
Alignment:
Q  910 agtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaag 971  Q
    |||||||||||||||  || || ||||||||| |||||  ||||||| ||||||||||||||    
T  47689867 agtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgatgttgaag 47689806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 47775737 - 47775664
Alignment:
Q  4 aacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatgtgggatctataa 77  Q
    ||||||||||||  |||| ||||| |||||||||||||| ||  |||||  |||||||||||  ||||||||||    
T  47775737 aacacaaagtaaggcaatatggatacatctcattatttcatttgctgaaatattgtttaatgctggatctataa 47775664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 125; Significance: 9e-64; HSPs: 7)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 125; E-Value: 9e-64
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 12354 - 12558
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||| | |  ||| || || |||||||||||||| ||||||||||||||||||||    
T  12354 atacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctc 12453  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg 702  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||| ||||||||| |||||| ||||    
T  12454 ttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaatacctaaaatg 12553  T
Q  703 atttt 707  Q
    |||||    
T  12554 atttt 12558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 497 - 705
Target Start/End: Original strand, 4728 - 4935
Alignment:
Q  497 ttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggatt 596  Q
    ||||| || ||||||| |||||||||||||| ||||| ||| |||| |||||||| ||| |||| ||||| |||||||||||||| ||||||||||||||    
T  4728 ttttgaatgcttactaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggatt 4826  T
Q  597 catctcttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacct 696  Q
    ||| | |||||| ||||||||||| |||||||||||||| | |||||||| ||| |  ||||||||||  |||||||| ||||| ||||||||| |||||    
T  4827 catatgttcatccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggtatagaatgcctcgagcaatacct 4926  T
Q  697 acaatgatt 705  Q
    | |||||||    
T  4927 aaaatgatt 4935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 857 - 1012
Target Start/End: Original strand, 12694 - 12848
Alignment:
Q  857 acctaccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaa 956  Q
    ||||||||||||| |||||||| || || ||||| |||||||| ||||||| |||||||||||||||||||||||  |||||||| ||||  || |||||    
T  12694 acctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaa 12793  T
Q  957 gtttcgatgttgaagtttagccactaaaactacttcattcttaaattctaaatctc 1012  Q
     ||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  12794 atttcggtgttgaagtttagccactaaaa-tacttcattcttaaactctagatctc 12848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 894 - 1055
Target Start/End: Original strand, 5112 - 5275
Alignment:
Q  894 aacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaagtttagccactaaaactacttca 993  Q
    |||||| ||||||||||| |||||||||||||||||||  || ||||| ||||  |||||||  ||||  |||||||||||||| |||||||  ||||||    
T  5112 aacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactagatttctgtgttgaagtttagcaactaaaaacacttca 5211  T
Q  994 ttcttaaattctaaatctcttgg--cagaatccctcgacaaccttttgacaccaatctcttgtc 1055  Q
    |||||||| ||| |||||| | |  |||||| | | || |||||||||||| ||| ||||||||    
T  5212 ttcttaaactctgaatctccttgtccagaattcattgataaccttttgacagcaacctcttgtc 5275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 286 - 415
Target Start/End: Original strand, 12120 - 12249
Alignment:
Q  286 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 385  Q
    |||| ||||||||||||||||||    ||||||| ||| || | || ||||| |||||||||||| ||||| || || |||||||| ||||| ||||||     
T  12120 ccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcatta 12219  T
Q  386 catactccggtgccatatatccactgcaaa 415  Q
    ||||||| ||||||||||||||||| ||||    
T  12220 catactcaggtgccatatatccactacaaa 12249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 313 - 407
Target Start/End: Original strand, 4522 - 4616
Alignment:
Q  313 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 407  Q
    ||||||| ||| ||||||| ||||| ||||||||| || |||||||| || || ||||||||||| |||||| ||||||| ||||||||||||||    
T  4522 ccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatcc 4616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 4229 - 4344
Alignment:
Q  4 aacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatgtgggatctataacatttgttggtgacccatctctccaa 103  Q
    |||||||||||| ||||| ||||| ||||| | |||||| ||   |||||||||||||||||| |  ||||| | ||||||||  | ||| |||||||||    
T  4229 aacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaa 4328  T
Q  104 tttctccatacctaca 119  Q
    ||||||||| ||||||    
T  4329 tttctccatgcctaca 4344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 3e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 504 - 707
Target Start/End: Original strand, 28828946 - 28829149
Alignment:
Q  504 tacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctct 603  Q
    ||||||||||||||| ||||||||  |||||||| | || ||||| ||||||  ||  ||||| ||||||||||||||||||||||||| |||||| |||    
T  28828946 tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtct 28829045  T
Q  604 tcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatga 703  Q
     ||||||||||||| ||||||||||| |||||||| || ||||| || || |||||||| |||||||| |||||||  ||||||| | |||||  |||||    
T  28829046 ccatctaagagaatgttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatga 28829145  T
Q  704 tttt 707  Q
    ||||    
T  28829146 tttt 28829149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 505 - 707
Target Start/End: Original strand, 28859966 - 28860168
Alignment:
Q  505 acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctctt 604  Q
    |||||||||||||| |||| |||  |||||||| | || ||||| ||||    ||  ||||| ||||||||||||||||  ||||||| |||||| ||||    
T  28859966 acttactaggttccaacaactctacttgtatttgcttgggtttgatccaatagaattagtcttgccatgccaaaatctgaaatcttagcattcatgtctt 28860065  T
Q  605 catctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatgat 704  Q
    | |||| |||||| ||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||  ||||||||| |||||  ||||||    
T  28860066 cgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcctcatgaaggtaaagaacgcctcgagcaataccttgaatgat 28860165  T
Q  705 ttt 707  Q
    |||    
T  28860166 ttt 28860168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 28854606 - 28854810
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    |||||||||| ||||| ||||  ||  |||||||||| || ||||| ||||||  ||  ||||| |||||||| ||||||| |||||||| |||||| |     
T  28854606 atacttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatgtt 28854705  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg 702  Q
    |||||||||||||||||||| ||||||||||||||| || ||||| || || ||||||||||||||||| || ||||  ||||||||| |||||  ||||    
T  28854706 ttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcctcatgaagatagagaacacctcgagcaatacctttaatg 28854805  T
Q  703 atttt 707  Q
    |||||    
T  28854806 atttt 28854810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 860 - 1001
Target Start/End: Original strand, 27369137 - 27369278
Alignment:
Q  860 taccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtt 959  Q
    ||||||| ||||||||||| || || |||||   |||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||  ||    
T  27369137 taccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaactagatt 27369236  T
Q  960 tcgatgttgaagtttagccactaaaactacttcattcttaaa 1001  Q
    ||||||||||||||| || ||||||| ||||||||| |||||    
T  27369237 tcgatgttgaagtttggctactaaaagtacttcatttttaaa 27369278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 289 - 407
Target Start/End: Original strand, 28859739 - 28859857
Alignment:
Q  289 tgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcat 388  Q
    |||||||||| ||| || || |||||||||||||||||||||| ||  |||||||||||||| |||||||| ||||||||||||| |||||||||| |||    
T  28859739 tgacgaatgcaactattcttttggccacttataatctcaagaaccagaacaccaaaactaaagacatctgatttcactgaaaattctccatgcattacat 28859838  T
Q  389 actccggtgccatatatcc 407  Q
    |||| ||||||||||||||    
T  28859839 actcaggtgccatatatcc 28859857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 505 - 696
Target Start/End: Original strand, 27368599 - 27368790
Alignment:
Q  505 acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctctt 604  Q
    |||||||||||||| || ||||| |||||| || | | ||||||  | | | ||||  |||| ||||  |||||||| | ||||||||||||||||||||    
T  27368599 acttactaggttccaacgattctatttgtacttccttcagtttgaccgataacaaatcgtcttgccaatccaaaatcggatatcttaggattcatctctt 27368698  T
Q  605 catctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacct 696  Q
    | ||||| |||||||||||||||||||||||||| || ||||| ||||  ||||||||||| ||||| |||||||  ||||||||| |||||    
T  27368699 cgtctaaaagaatattgcttgctttgagatcacggtgtataatgcgcaagcgagaatcctcgtgaagataaagaagacctcgagcaatacct 27368790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 505 - 707
Target Start/End: Original strand, 28874536 - 28874738
Alignment:
Q  505 acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctctt 604  Q
    |||||||||||| | |||| |||  |||||||| | || ||||| ||||||  ||  ||||| ||||||||||||||||  ||||||| |||||  ||||    
T  28874536 acttactaggtttcaacaactctacttgtatttgcttgggtttgatccacaagaataagtcttgccatgccaaaatctgagatcttagcattcacgtctt 28874635  T
Q  605 catctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatgat 704  Q
    | ||||||||||| ||||||||||||||||| || || ||||||||||| |  |||||| ||||||| |||||||  ||||||||| | |||  ||||||    
T  28874636 cgtctaagagaatgttgcttgctttgagatcgcggtgtataatacgcagtcttgaatccccatgaagataaagaacgcctcgagcaatgccttgaatgat 28874735  T
Q  705 ttt 707  Q
    |||    
T  28874736 ttt 28874738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 860 - 1055
Target Start/End: Original strand, 28854962 - 28855159
Alignment:
Q  860 taccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtt 959  Q
    ||||||| |||||||| || || || |||||  ||||||||||||| || |||||||||||||| ||||| |||   |||||||||| ||||||||| ||    
T  28854962 taccaaatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctctcccttcgatagtaaaaccaagtaacctaactaaatt 28855061  T
Q  960 tcgatgttgaagtttagccactaaaactacttcattcttaaattctaaatct-cttgg-cagaatccctcgacaaccttttgacaccaatctcttgtc 1055  Q
    | ||||||||||||||||||  || | || ||||||||||||||| | |||| ||||| |||||| | | ||||||||||||||  ||||| ||||||    
T  28855062 ttgatgttgaagtttagccatcaagattaattcattcttaaattccagatctccttggccagaattcatggacaaccttttgacggcaatcacttgtc 28855159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 27368303 - 27368417
Alignment:
Q  299 cactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgc 398  Q
    |||| ||||| || |||||||||||||||||||  ||||| ||||||||| | |||||||| || || ||||||| ||||||||| |||||||| |||||    
T  27368303 cactatttttatgaccacttataatctcaagaagtaatactccaaaactatagacatctgattttaccgaaaattctccatgcatcgcatactcaggtgc 27368402  T
Q  399 catatatccactgca 413  Q
    |||||||||||||||    
T  27368403 catatatccactgca 27368417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 310 - 410
Target Start/End: Original strand, 28828672 - 28828772
Alignment:
Q  310 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 409  Q
    ||||||||||||||||||||||  | ||||||||||| ||| |||||||| ||||| ||||||| |||||||||| ||||||| |||||||| |||||||    
T  28828672 tggccacttataatctcaagaactagtacaccaaaaccaaagacatctgatttcaccgaaaattctccatgcattacatactcaggtgccatgtatccac 28828771  T
Q  410 t 410  Q
    |    
T  28828772 t 28828772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 286 - 404
Target Start/End: Original strand, 28854349 - 28854467
Alignment:
Q  286 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 385  Q
    |||||| || ||||||| || ||  |||||||||||||||||||||  | |||||||||||| || |||||||| || |||||||||| ||||||||||     
T  28854349 ccatgatgagtgccactattctttaggccacttataatctcaagaactagtacaccaaaactgaagacatctgattttactgaaaattctccatgcatta 28854448  T
Q  386 catactccggtgccatata 404  Q
    ||||||| |||||||||||    
T  28854449 catactcaggtgccatata 28854467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 860 - 1001
Target Start/End: Original strand, 28860321 - 28860462
Alignment:
Q  860 taccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtt 959  Q
    ||||||| |||||||| || || || |||||  ||| ||||||||| ||||||||||||||||| ||||| |||   ||||||||||| |||||||| ||    
T  28860321 taccaaatatgaagtagtcaagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaactaaatt 28860420  T
Q  960 tcgatgttgaagtttagccactaaaactacttcattcttaaa 1001  Q
     || ||||||||||| |||| |||||  ||||||||||||||    
T  28860421 ccggtgttgaagtttggccattaaaagcacttcattcttaaa 28860462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 860 - 1012
Target Start/End: Original strand, 28829285 - 28829437
Alignment:
Q  860 taccaaaaatgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtt 959  Q
    ||||||| |||||||| || || || |||||  ||||||||||||| ||||||| ||||||||| ||||| | |   |||||||| || |||||||| ||    
T  28829285 taccaaatatgaagtagtcaagacttttattaggaacaaattcatagacaagtaatctttctctcccttcaacagtaaaaccaaggagtctaactaaatt 28829384  T
Q  960 tcgatgttgaagtttagccactaaaactacttcattcttaaattctaaatctc 1012  Q
    ||| ||||||||||| ||||| |||  |||||| ||||||||||||| |||||    
T  28829385 tcggtgttgaagtttggccaccaaacgtacttcgttcttaaattctagatctc 28829437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 868 - 1012
Target Start/End: Original strand, 28874899 - 28875043
Alignment:
Q  868 atgaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgtt 967  Q
    |||||||| || || || |||||  ||| ||||||||| ||||||||||||||||| ||||| |||   ||||||||||| ||||| || || || ||||    
T  28874899 atgaagtagtctagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaaccaaattccggtgtt 28874998  T
Q  968 gaagtttagccactaaaactacttcattcttaaattctaaatctc 1012  Q
    ||||||| |||| |||||  ||||||||||||||||||| |||||    
T  28874999 gaagtttggccattaaaagcacttcattcttaaattctatatctc 28875043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 503 - 679
Target Start/End: Complemental strand, 11224961 - 11224785
Alignment:
Q  503 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 602  Q
    |||||||||| ||||| || ||| | ||||||||  | |||||||| || |||  ||  ||||| || || |||||||| | ||| |||||||||| ||     
T  11224961 atacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt 11224862  T
Q  603 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaa 679  Q
    ||| || |||||||| || |||||||| ||||||||||| |||||||| ||  ||||||||| ||||||||||||||    
T  11224861 ttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaa 11224785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 11225354 - 11225254
Alignment:
Q  313 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgc 412  Q
    |||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || ||||||||||||||||    
T  11225354 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 11225255  T
Q  413 a 413  Q
    |    
T  11225254 a 11225254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 413
Target Start/End: Original strand, 20167898 - 20167980
Alignment:
Q  331 atcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 413  Q
    ||||| |||||||| ||||| |||||||| ||| |||||||| |||| |||||||||||||| || | |||||| ||||||||    
T  20167898 atcaaaacaccaaagctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccactgca 20167980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 413
Target Start/End: Complemental strand, 20285201 - 20285109
Alignment:
Q  321 aatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 413  Q
    |||||| || ||||| |||||||||||||| | |||||| ||| ||||||||  ||| ||||||||||| ||||| | |||||| ||||||||    
T  20285201 aatctctagtatcaaaacaccaaaactaaaaaaatctgatttctctgaaaataatccttgcattgcatattccggagacatatagccactgca 20285109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 20264265 - 20264209
Alignment:
Q  333 caatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 389  Q
    |||||||||||| ||||| |||||||||||| ||||||||  ||| |||||||||||    
T  20264265 caatacaccaaagctaaaaacatctgacttctctgaaaataatccttgcattgcata 20264209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 321 - 413
Target Start/End: Complemental strand, 20294918 - 20294826
Alignment:
Q  321 aatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 413  Q
    |||||| || ||||| |||||||| ||||| |||||||| ||| ||||||||  ||| ||||||||||| || || | |||||| ||||||||    
T  20294918 aatctctagcatcaaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactgca 20294826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 20303958 - 20303867
Alignment:
Q  322 atctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 413  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||| |||||||  ||||  ||||||| || || || | |||||| ||||||||    
T  20303958 atctctagaatcaatacaccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatatagccactgca 20303867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 2690505 - 2690575
Alignment:
Q  302 tgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaat 372  Q
    |||||||| ||||||| | |||||| || | |||||| ||||||||| ||||||||||||| |||||||||    
T  2690505 tgtttttgcggccactcacaatctctagtagcaatacgccaaaactatatacatctgacttgactgaaaat 2690575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 2716879 - 2716952
Alignment:
Q  340 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 413  Q
    |||||||||||||||||||| ||| |||||||   ||| | ||||||||| ||||| | ||| |||||||||||    
T  2716879 ccaaaactaaatacatctgatttctctgaaaacaatccttccattgcatattccggagacatgtatccactgca 2716952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 2723502 - 2723575
Alignment:
Q  340 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 413  Q
    |||||||||||||||||||| ||| |||||||  | || | ||||||||| ||||| | ||| |||||||||||    
T  2723502 ccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgca 2723575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 2745332 - 2745405
Alignment:
Q  340 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 413  Q
    |||||||||||||||||||| ||| |||||||  | || | ||||||||| ||||| | ||| |||||||||||    
T  2745332 ccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgca 2745405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 36437521 - 36437582
Alignment:
Q  350 atacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactg 411  Q
    ||||||| |||||||| ||||||||||| | ||| ||||||||||| | |||||| ||||||    
T  36437521 atacatcagacttcaccgaaaattgtccttccatggcatactccggagacatataaccactg 36437582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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