View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4372-Insertion-3 (Length: 782)
Name: NF4372-Insertion-3
Description: NF4372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4372-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 126 - 403
Target Start/End: Original strand, 25609826 - 25610106
Alignment:
| Q |
126 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaacatcaacagcctggtaataatttattcgtacttttgttta |
225 |
Q |
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| T |
25609826 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaacatcaacagcctggtaataatttattcgtacttttgttta |
25609925 |
T |
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| Q |
226 |
tatgtttctcccacatgatcatcatctcatgtattctacaacttgtttgccttgttaacaat---aaatactttgcattctacaatttggtcagtaaact |
322 |
Q |
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| T |
25609926 |
tatgtttctcccacatgatcatcatctcatgcattctacaacttgtttgccttgttaataataagaaatactttgcattctacaatttggtcagtaaact |
25610025 |
T |
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| Q |
323 |
agttgtattaatttacatgacgttcttcttagaacacattcgatatcccttagctcaacagccgagttatctactatacat |
403 |
Q |
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| T |
25610026 |
agttgtattaatttacatgacgttcttcttagaacacattcaatatcccttagctcaacagccgagttatctactatacat |
25610106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 452 - 782
Target Start/End: Original strand, 25610201 - 25610516
Alignment:
| Q |
452 |
aaaatcgaattctgttttgactatttgatctcaattggaaggttaccgatcccctggctttgtgaatgctcgcagggatccggcttcatatacaaaacat |
551 |
Q |
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| T |
25610201 |
aaaatcaaattctgttttgactatttgatctcaattggaaggtta----tcccctggctttgtgaatgctcgcagggatccggcttcatatacataacat |
25610296 |
T |
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| Q |
552 |
gtttatttttttaacattacttcttaccaagctactatgnnnnnnnnnnnnnnnnnnnnngtcataatctgcagaaagtaccaccggagattgttacgga |
651 |
Q |
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| T |
25610297 |
gtttatttttttaacattacttcttgccaagctactatgtttttttttg-----------gtcataatctgcagaaggtaccaccggagattgttacgga |
25610385 |
T |
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| Q |
652 |
tttgggtgaagagttgtggaagaatacgtttatgattctggtaggttcgtctggtgagaagtgggaagtgagtattttgaagaaagggaatgacatatat |
751 |
Q |
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| T |
25610386 |
tttgggtgaagagttgtggaagaatacgtttatgattctggtaggttcgtctggtgagaagtgggaagtgagtattttgaagaaagggaatgacatatat |
25610485 |
T |
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| Q |
752 |
ctacaaattggttggcaaaaatttctgatag |
782 |
Q |
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| T |
25610486 |
ctacaaattggttggcagaaatttctgatag |
25610516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 612 - 779
Target Start/End: Original strand, 25615997 - 25616167
Alignment:
| Q |
612 |
gtcataatctgcagaaagtaccaccggagattgttacggatttgggtgaagagttgtggaagaatacgtttatgattctggtaggttcgtctggtgagaa |
711 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| | | || ||||| ||| | || ||||||||||| |
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| T |
25615997 |
gtcataatctgcagaaagtaccaccgaagattgttatggatttgggtgaagagttttggaagaaagcatcaattattctagtatgctcttctggtgagaa |
25616096 |
T |
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| Q |
712 |
gtgggaagtgagtattttgaagaaagggaatgacatatatctacaaa---ttggttggcaaaaatttctga |
779 |
Q |
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| T |
25616097 |
gtgggaagttaaaattttgaagaaagcaaatgacatttatgtgcgaaactttggttggcaaaagtttctga |
25616167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 25615527 - 25615588
Alignment:
| Q |
126 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaaca |
187 |
Q |
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| T |
25615527 |
gatggatcatgagcagcaagacaagccatcctttttcgctatcatcaaagaaggcttcaaca |
25615588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 25610117 - 25610164
Alignment:
| Q |
400 |
acattcatgaagtttggagattcatgactgtcccatcaaaatggggtg |
447 |
Q |
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| T |
25610117 |
acattcatgaagtttgcagatccatgactgtccgatcaaaatggggtg |
25610164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 25609759 - 25609797
Alignment:
| Q |
7 |
agttttttcttggttaagtttctgttcgcaccttcaaaa |
45 |
Q |
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| T |
25609759 |
agttttttcttggttaagtttctgttcgcgccttcaaaa |
25609797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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