View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4372-Insertion-5 (Length: 541)

Name: NF4372-Insertion-5
Description: NF4372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4372-Insertion-5
NF4372-Insertion-5
[»] chr6 (16 HSPs)
chr6 (7-225)||(2678950-2679163)
chr6 (7-154)||(2583935-2584082)
chr6 (227-383)||(2679208-2679367)
chr6 (7-135)||(2617739-2617867)
chr6 (7-135)||(2646549-2646677)
chr6 (430-539)||(2679414-2679523)
chr6 (7-138)||(2601771-2601902)
chr6 (10-132)||(2431231-2431353)
chr6 (7-136)||(2574369-2574498)
chr6 (7-135)||(2447304-2447432)
chr6 (432-515)||(2616813-2616896)
chr6 (430-522)||(2574582-2574675)
chr6 (430-519)||(2646766-2646855)
chr6 (430-515)||(2583641-2583726)
chr6 (430-523)||(2602590-2602683)
chr6 (430-517)||(2447135-2447222)
[»] chr7 (3 HSPs)
chr7 (9-132)||(17875035-17875158)
chr7 (283-346)||(41177389-41177452)
chr7 (245-340)||(22559537-22559630)
[»] chr5 (1 HSPs)
chr5 (306-346)||(31594668-31594708)
[»] chr1 (2 HSPs)
chr1 (305-340)||(16828558-16828593)
chr1 (304-343)||(39251361-39251400)
[»] chr3 (1 HSPs)
chr3 (304-346)||(54254077-54254119)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 4e-98; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 2678950 - 2679163
Alignment:
Q  7 acttctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcac 106  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2678950 acttctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcac 2679049  T
Q  107 ctgttcttgtccaacaataaccctctgaagttcctcacaaagtaaaaagagggtacaatattgttaatacttgtgtatcatttttggaaagaataaatta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||    
T  2679050 ctgttcttgtccaacaataaccctctgaagttcctcacaaagtaaaacgagggtacaa---tgttaatacttgtgtatca--tttggaaagaataaatta 2679144  T
Q  207 tcagtttagtcctcaaaat 225  Q
    |||||||||||||||||||    
T  2679145 tcagtttagtcctcaaaat 2679163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 2584082 - 2583935
Alignment:
Q  7 acttctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcac 106  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2584082 acttctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaactgcttttaagtacctagctctcattcttgcagcttgtctttcac 2583983  T
Q  107 ctgttcttgtccaacaataaccctctgaagttcctcacaaagtaaaaa 154  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  2583982 ctgttcttgtccaacaataaccctctgaaattcctcaccaagtaaaaa 2583935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 227 - 383
Target Start/End: Original strand, 2679208 - 2679367
Alignment:
Q  227 atgtgaaaatccgtcatgatagtctgtaacatcttaatagcggatacttaactaacagattttatataactttaggtactact---tattatatttatat 323  Q
    |||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  2679208 atgtgaaaatccgtcatgttagtccttaacatcttaatagtggatacttaactaacagattttatataactttaggtactactaattattatatttatat 2679307  T
Q  324 actttagagattaaattggagagttgcgaataaaccatcaatttagtcctattcaatatc 383  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2679308 actttagagattaaattggagagttgtgaataaaccatcaatttagtcctattcaatatc 2679367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 2617867 - 2617739
Alignment:
Q  7 acttctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcac 106  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  2617867 acttctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcac 2617768  T
Q  107 ctgttcttgtccaacaataaccctctgaa 135  Q
    |||||||||||||||||||||||||||||    
T  2617767 ctgttcttgtccaacaataaccctctgaa 2617739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 2646549 - 2646677
Alignment:
Q  7 acttctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcac 106  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  2646549 acttctgatgtgcttgtaatatgcaaatcaaagtatgatacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcac 2646648  T
Q  107 ctgttcttgtccaacaataaccctctgaa 135  Q
    |||||||||||||||||||||||||||||    
T  2646649 ctgttcttgtccaacaataaccctctgaa 2646677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 430 - 539
Target Start/End: Original strand, 2679414 - 2679523
Alignment:
Q  430 tcacctaggaagcaagcagcaaaagaggcacatgccaaatataacaaaacaagagcattctgcatcacaaagttaataaagtcaaaccaaatatcctata 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2679414 tcacctaggaagcaagcagcaaaagaggcacatgccaaatataacaaaacaagagcattctgcatcacaaagttaataaagtcaaaccaaatatcctata 2679513  T
Q  530 atcctactat 539  Q
    || |||||||    
T  2679514 atgctactat 2679523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 2601771 - 2601902
Alignment:
Q  7 acttctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcac 106  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||     
T  2601771 acttctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttaaaactgcttttaagtacctaactctcattcttgcagcttgtctttcat 2601870  T
Q  107 ctgttcttgtccaacaataaccctctgaagtt 138  Q
    ||||||||||||||||||||||||||| ||||    
T  2601871 ctgttcttgtccaacaataaccctctgtagtt 2601902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 2431353 - 2431231
Alignment:
Q  10 tctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcacctg 109  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  2431353 tctgttgtgcttgtaacatgcaaatcaaagtatgatacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctg 2431254  T
Q  110 ttcttgtccaacaataaccctct 132  Q
    |||||||||||||||| ||||||    
T  2431253 ttcttgtccaacaatagccctct 2431231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 2574369 - 2574498
Alignment:
Q  7 acttctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcac 106  Q
    ||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  2574369 acttctgatgtgcttgtaatatgcaaatcaaagtaagctacatcttgtcttagaattgcttttaagtacctaactctcattcttgcagcttgtctttcac 2574468  T
Q  107 ctgttcttgtccaacaataaccctctgaag 136  Q
    ||||||||||||||||||||||||||||||    
T  2574469 ctgttcttgtccaacaataaccctctgaag 2574498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 2447432 - 2447304
Alignment:
Q  7 acttctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcac 106  Q
    ||||||||| |||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  2447432 acttctgatatgcttgtaccgtgcaaatcaaagtatgctacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctctcac 2447333  T
Q  107 ctgttcttgtccaacaataaccctctgaa 135  Q
    |||||||||||||||||||||||||||||    
T  2447332 ctgttcttgtccaacaataaccctctgaa 2447304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 2616896 - 2616813
Alignment:
Q  432 acctaggaagcaagcagcaaaagaggcacatgccaaatataacaaaacaagagcattctgcatcacaaagttaataaagtcaaa 515  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  2616896 acctaggaagcaagcaacacaagaggcacatgccaaatataacaaaacaacagcattctgcatcacaaagttaacaaagtcaaa 2616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 430 - 522
Target Start/End: Original strand, 2574582 - 2574675
Alignment:
Q  430 tcacctaggaagcaagcagcaaaagaggcacatgccaaatataacaaaacaagagcattctgcatcacaaag-ttaataaagtcaaaccaaata 522  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||| |||| |||||||||||||||||||||    
T  2574582 tcacctaggaagcaagcaacaaaagaggcacatgccaaatataaaaaaagaacagcattctgcatcaaaaagtttaataaagtcaaaccaaata 2574675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 430 - 519
Target Start/End: Original strand, 2646766 - 2646855
Alignment:
Q  430 tcacctaggaagcaagcagcaaaagaggcacatgccaaatataacaaaacaagagcattctgcatcacaaagttaataaagtcaaaccaa 519  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||    
T  2646766 tcacctaggaagcaagcaacaaaagaagcacatgccaaatataacaaaacaatagcattctgcatcacaaagttgacaaagtcaagccaa 2646855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 430 - 515
Target Start/End: Complemental strand, 2583726 - 2583641
Alignment:
Q  430 tcacctaggaagcaagcagcaaaagaggcacatgccaaatataacaaaacaagagcattctgcatcacaaagttaataaagtcaaa 515  Q
    |||||||||||||||||| || ||||||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||    
T  2583726 tcacctaggaagcaagcaacagaagaggcacatgccaaatataacaatacaataacattctgcatcacaaagttgataaagtcaaa 2583641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 430 - 523
Target Start/End: Original strand, 2602590 - 2602683
Alignment:
Q  430 tcacctaggaagcaagcagcaaaagaggcacatgccaaatataacaaaacaagagcattctgcatcacaaagttaataaagtcaaaccaaatat 523  Q
    |||||||||||||||||| | ||||||||||| |||| |||||| |||| || |||||| ||||||| ||||||||||||||||||||||||||    
T  2602590 tcacctaggaagcaagcaacgaaagaggcacaagccagatataaaaaaagaacagcattgtgcatcaaaaagttaataaagtcaaaccaaatat 2602683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 430 - 517
Target Start/End: Complemental strand, 2447222 - 2447135
Alignment:
Q  430 tcacctaggaagcaagcagcaaaagaggcacatgccaaatataacaaaacaagagcattctgcatcacaaagttaataaagtcaaacc 517  Q
    |||||||||||||||  |  |||||||||||| ||||||||||||| || || |||||||||||||| |||||| |||||||||||||    
T  2447222 tcacctaggaagcaaagaaaaaaagaggcacacgccaaatataacacaataacagcattctgcatcataaagttgataaagtcaaacc 2447135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 17875035 - 17875158
Alignment:
Q  9 ttctgatgtgcttgtaacatgcaaatcaaagtatgatacctcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcacct 108  Q
    |||||| ||||||||||| ||||||||||| || |  || ||||| || || ||||||||||||||  |   |||||||||||||||||||||| ||| |    
T  17875035 ttctgaggtgcttgtaacctgcaaatcaaaataagcaacttcttgcctaagtactgcttttaagtacttgtatctcattcttgcagcttgtcttccactt 17875134  T
Q  109 gttcttgtccaacaataaccctct 132  Q
    || |||||||||||||| ||||||    
T  17875135 gtccttgtccaacaatatccctct 17875158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 41177452 - 41177389
Alignment:
Q  283 agattttatataactttaggtactacttattatatttatatactttagagattaaattggagag 346  Q
    |||||| |||||  |||||| | |||||||||| | ||||||||||||||||||||||||||||    
T  41177452 agatttcatatacttttagggattacttattatttgtatatactttagagattaaattggagag 41177389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 22559537 - 22559630
Alignment:
Q  245 atagtctgtaacatcttaatagcggatacttaactaacagattttatataactttaggtactacttattatatttatatactttagagattaaatt 340  Q
    ||||||| ||||||||||||||| || ||| || | || ||||||||||  ||||  | ||||||||| |||||||||||||||||  ||||||||    
T  22559537 atagtctctaacatcttaatagcagagactaaattgaccgattttatat--cttttcgaactacttataatatttatatactttaggtattaaatt 22559630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 31594708 - 31594668
Alignment:
Q  306 tacttattatatttatatactttagagattaaattggagag 346  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  31594708 tacttattaaatttatatactttagagataaaattggagag 31594668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 16828558 - 16828593
Alignment:
Q  305 ctacttattatatttatatactttagagattaaatt 340  Q
    |||||||||||||||||||| |||||||||||||||    
T  16828558 ctacttattatatttatatattttagagattaaatt 16828593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 39251361 - 39251400
Alignment:
Q  304 actacttattatatttatatactttagagattaaattgga 343  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  39251361 actacttattatatttatatagtttaaagattaaattgga 39251400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 54254077 - 54254119
Alignment:
Q  304 actacttattatatttatatactttagagattaaattggagag 346  Q
    ||||||||||||||||||| ||||||| || ||||||||||||    
T  54254077 actacttattatatttatacactttagggactaaattggagag 54254119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University