View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4372-Insertion-6 (Length: 520)

Name: NF4372-Insertion-6
Description: NF4372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4372-Insertion-6
NF4372-Insertion-6
[»] chr6 (1 HSPs)
chr6 (6-520)||(31419812-31420327)


Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 6 - 520
Target Start/End: Complemental strand, 31420327 - 31419812
Alignment:
Q  6 catcatgttcatgtttgaattctccatgaattgattcaatagttccatgctttgatcagaatcaagaaaaggaaaagaaggtctaataatattttgaaaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  31420327 catcatgttcatgtttgaattctccatgaattgattcaatagttccatgctttgatcagaatcaagaaaaggcaaagaaggtctaataatgttttgaaaa 31420228  T
Q  106 ttttctgtgaattcagccatgtgtannnnnnnncttctaacaagtttattacttagaaatattgtgannnnnnnnnnn-agaacttgtaatattgtggat 204  Q
    |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||            |||||||| ||||||||||||    
T  31420227 ttttctgtgaattcagccatgtgtattttttt--ttctaacaagtttattacttagaaatattgtgattttttttttttagaacttgcaatattgtggat 31420130  T
Q  205 aatgtgagttacaaattgttctatttatactgtagaattttcagctgcattgatgaatgggactaatctttggtggccacgtggcaaatcaagcttcttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31420129 aatgtgagttacaaattgttctatttatactgtagaattttcagctgcattgatgaatgggactaatctttggtggccacgtggcaaatcaagcctcttt 31420030  T
Q  305 agttttctgttccctagttgggtcccatgtatatagaaaaatctttaatattcaataagggtccatgtttttatgagagg--nnnnnnngcattttctat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||         |||||||||||    
T  31420029 agttttctgttccctagttgggtcccatgtatatagaaaaatctttaatatttaacaagggtccatgtttttatgagagggaaaaaaaagcattttctat 31419930  T
Q  403 ttttggagcttttagaccttttaatttgggaagcatgactgtatttgttacctttattatctaattttttaagttgtagtgggaattgtgaaaaagtgga 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31419929 ttttggagcttttagaccttttaatttgggaagcatgactgtatttgttacctttattatctaattttttaagttgtagtgggaattgagaaaaagtgga 31419830  T
Q  503 cttgtttgagtggagaag 520  Q
    ||||||||||||||||||    
T  31419829 cttgtttgagtggagaag 31419812  T

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