View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4372_low_2 (Length: 251)

Name: NF4372_low_2
Description: NF4372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4372_low_2
NF4372_low_2
[»] chr6 (16 HSPs)
chr6 (1-251)||(31155181-31155431)
chr6 (1-247)||(4668000-4668245)
chr6 (1-247)||(4674847-4675092)
chr6 (1-247)||(4185610-4185855)
chr6 (1-168)||(4186454-4186611)
chr6 (160-247)||(4189203-4189290)
chr6 (80-247)||(27333071-27333238)
chr6 (80-247)||(27393811-27393978)
chr6 (55-196)||(22080576-22080718)
chr6 (41-219)||(23019535-23019713)
chr6 (112-247)||(19652393-19652529)
chr6 (112-212)||(1561501-1561602)
chr6 (106-247)||(19668566-19668707)
chr6 (112-251)||(28496256-28496395)
chr6 (112-251)||(29808667-29808806)
chr6 (165-251)||(21939635-21939722)
[»] scaffold0475 (1 HSPs)
scaffold0475 (1-247)||(9165-9410)
[»] chr1 (17 HSPs)
chr1 (1-132)||(21161802-21161933)
chr1 (84-251)||(21161937-21162103)
chr1 (112-212)||(52927803-52927903)
chr1 (38-247)||(22921654-22921865)
chr1 (138-247)||(49261565-49261675)
chr1 (124-251)||(21754247-21754374)
chr1 (116-251)||(33681211-33681347)
chr1 (177-247)||(28194235-28194306)
chr1 (137-217)||(21896074-21896154)
chr1 (138-247)||(35981473-35981583)
chr1 (113-212)||(22237828-22237929)
chr1 (137-212)||(12271772-12271847)
chr1 (138-247)||(20637074-20637184)
chr1 (112-212)||(21861390-21861490)
chr1 (1-74)||(20248366-20248438)
chr1 (138-247)||(20248501-20248611)
chr1 (160-209)||(16368110-16368159)
[»] chr7 (18 HSPs)
chr7 (1-247)||(67832-68080)
chr7 (41-247)||(16056456-16056662)
chr7 (1-212)||(16219538-16219751)
chr7 (41-247)||(22073043-22073250)
chr7 (93-247)||(16324186-16324340)
chr7 (1-247)||(44014265-44014508)
chr7 (1-247)||(47831894-47832143)
chr7 (1-247)||(810916-811165)
chr7 (112-212)||(15754709-15754810)
chr7 (138-247)||(9389482-9389592)
chr7 (112-212)||(34200983-34201083)
chr7 (137-212)||(15113168-15113243)
chr7 (137-212)||(15116705-15116780)
chr7 (112-250)||(11995813-11995951)
chr7 (165-251)||(2832087-2832174)
chr7 (165-204)||(2529883-2529922)
chr7 (165-251)||(9751332-9751419)
chr7 (165-212)||(39267467-39267515)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-247)||(10614-10862)
[»] chr8 (10 HSPs)
chr8 (1-247)||(6520455-6520702)
chr8 (38-247)||(38855037-38855247)
chr8 (137-219)||(23760655-23760737)
chr8 (137-247)||(26355485-26355596)
chr8 (49-247)||(21285734-21285932)
chr8 (137-212)||(21255444-21255519)
chr8 (177-247)||(39834095-39834166)
chr8 (137-251)||(21249606-21249720)
chr8 (137-212)||(21673928-21674004)
chr8 (160-209)||(22364910-22364959)
[»] chr5 (11 HSPs)
chr5 (1-247)||(21329282-21329531)
chr5 (41-212)||(26011856-26012027)
chr5 (1-247)||(21501941-21502190)
chr5 (177-247)||(5888962-5889033)
chr5 (112-247)||(22959320-22959456)
chr5 (116-251)||(21565746-21565882)
chr5 (138-247)||(21741330-21741440)
chr5 (165-251)||(22119975-22120062)
chr5 (165-247)||(21871358-21871440)
chr5 (165-247)||(21875638-21875720)
chr5 (165-251)||(24767119-24767206)
[»] scaffold0476 (1 HSPs)
scaffold0476 (1-219)||(12853-13074)
[»] scaffold0010 (1 HSPs)
scaffold0010 (112-251)||(130105-130245)
[»] scaffold0034 (1 HSPs)
scaffold0034 (41-247)||(32664-32870)
[»] scaffold0138 (2 HSPs)
scaffold0138 (1-247)||(13026-13274)
scaffold0138 (160-209)||(18061-18110)
[»] chr4 (10 HSPs)
chr4 (1-247)||(39706074-39706322)
chr4 (112-251)||(12774197-12774337)
chr4 (160-247)||(15190563-15190651)
chr4 (138-247)||(15099574-15099684)
chr4 (112-247)||(8846572-8846708)
chr4 (165-251)||(24028993-24029080)
chr4 (112-208)||(43198380-43198473)
chr4 (165-251)||(22633995-22634082)
chr4 (165-204)||(20157120-20157159)
chr4 (160-209)||(46640280-46640329)
[»] scaffold0243 (1 HSPs)
scaffold0243 (1-247)||(5908-6157)
[»] scaffold0218 (1 HSPs)
scaffold0218 (122-245)||(7864-7987)
[»] scaffold0556 (2 HSPs)
scaffold0556 (112-247)||(7009-7145)
scaffold0556 (41-246)||(8144-8349)
[»] chr3 (19 HSPs)
chr3 (112-247)||(16097528-16097664)
chr3 (1-247)||(14234574-14234825)
chr3 (1-204)||(15471011-15471215)
chr3 (112-251)||(1644465-1644605)
chr3 (124-251)||(32307879-32308007)
chr3 (112-204)||(49389459-49389551)
chr3 (124-204)||(12934141-12934221)
chr3 (112-204)||(16103979-16104071)
chr3 (149-247)||(12171891-12171990)
chr3 (138-247)||(1465196-1465306)
chr3 (124-251)||(49667866-49667994)
chr3 (165-251)||(14665857-14665944)
chr3 (165-251)||(14735370-14735457)
chr3 (44-247)||(37250953-37251156)
chr3 (169-251)||(12340008-12340091)
chr3 (137-212)||(13210149-13210225)
chr3 (1-78)||(13210285-13210361)
chr3 (165-212)||(4588609-4588657)
chr3 (165-212)||(14669012-14669060)
[»] scaffold0555 (1 HSPs)
scaffold0555 (112-247)||(10327-10462)
[»] scaffold0023 (3 HSPs)
scaffold0023 (38-247)||(39959-40170)
scaffold0023 (41-219)||(100502-100682)
scaffold0023 (137-204)||(101618-101685)
[»] chr2 (4 HSPs)
chr2 (117-212)||(28406182-28406278)
chr2 (124-204)||(22134046-22134126)
chr2 (160-247)||(23207526-23207613)
chr2 (160-209)||(23791523-23791572)
[»] scaffold0530 (1 HSPs)
scaffold0530 (1-247)||(820-1068)
[»] scaffold0211 (1 HSPs)
scaffold0211 (124-251)||(28592-28720)
[»] scaffold0028 (2 HSPs)
scaffold0028 (112-251)||(132851-132991)
scaffold0028 (38-196)||(62320-62479)
[»] scaffold0102 (1 HSPs)
scaffold0102 (112-251)||(19464-19604)
[»] scaffold1984 (1 HSPs)
scaffold1984 (109-251)||(326-468)
[»] scaffold1765 (1 HSPs)
scaffold1765 (41-212)||(1211-1382)
[»] scaffold0621 (2 HSPs)
scaffold0621 (38-219)||(6660-6842)
scaffold0621 (112-212)||(8669-8769)
[»] scaffold0125 (1 HSPs)
scaffold0125 (137-247)||(45577-45688)
[»] scaffold0507 (1 HSPs)
scaffold0507 (109-247)||(7844-7982)
[»] scaffold1257 (1 HSPs)
scaffold1257 (112-212)||(2038-2139)
[»] scaffold0020 (1 HSPs)
scaffold0020 (112-247)||(15617-15753)
[»] scaffold1137 (1 HSPs)
scaffold1137 (137-250)||(2085-2199)
[»] scaffold0628 (1 HSPs)
scaffold0628 (112-197)||(2640-2725)
[»] scaffold0413 (1 HSPs)
scaffold0413 (104-209)||(12760-12865)
[»] scaffold0333 (2 HSPs)
scaffold0333 (1-204)||(6698-6903)
scaffold0333 (1-204)||(14078-14283)
[»] scaffold0037 (2 HSPs)
scaffold0037 (1-198)||(22509-22704)
scaffold0037 (165-251)||(80114-80201)
[»] scaffold0420 (1 HSPs)
scaffold0420 (160-209)||(6106-6155)
[»] scaffold0075 (1 HSPs)
scaffold0075 (172-251)||(8076-8156)
[»] scaffold0008 (1 HSPs)
scaffold0008 (112-212)||(14517-14618)
[»] scaffold0737 (1 HSPs)
scaffold0737 (112-247)||(1583-1718)
[»] scaffold0347 (1 HSPs)
scaffold0347 (173-251)||(288-367)
[»] scaffold0207 (1 HSPs)
scaffold0207 (38-212)||(2465-2641)
[»] scaffold0192 (1 HSPs)
scaffold0192 (165-251)||(10162-10249)
[»] scaffold0166 (1 HSPs)
scaffold0166 (165-251)||(9616-9703)
[»] scaffold0016 (1 HSPs)
scaffold0016 (165-251)||(207301-207388)
[»] scaffold0001 (2 HSPs)
scaffold0001 (137-205)||(160908-160976)
scaffold0001 (160-194)||(162940-162974)
[»] scaffold0221 (1 HSPs)
scaffold0221 (165-204)||(12638-12677)
[»] scaffold1403 (1 HSPs)
scaffold1403 (160-209)||(797-846)
[»] scaffold0123 (1 HSPs)
scaffold0123 (160-209)||(25354-25403)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 31155431 - 31155181
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31155431 tataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaaa 31155332  T
Q  101 aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31155331 aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggaccgcatttaac 31155232  T
Q  201 ctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31155231 ctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctctgctc 31155181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 4668245 - 4668000
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  4668245 tataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgtttaacatcatcaacatcattggattaaac 4668146  T
Q  101 aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaac 200  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  4668145 aatt-agactcactggaacatcaacagcatgctaggcaacttagttcttaacatctaagatcaactcacaacaactcgtgcgacaaggatcgcatttaac 4668047  T
Q  201 ctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||| ||||||||  |||||| ||||||||||||||||||||||||||    
T  4668046 ctagcaaggcattctgtaaatgggtagctcgcgaggcgagagcctct 4668000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 4675092 - 4674847
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  4675092 tataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgtttaacatcatcaacatcattggattaaac 4674993  T
Q  101 aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaac 200  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  4674992 aatt-agactcactggaacatcaacagcatgctaggcaacttagttcttaacatctaagatcaactcacaacaactcgtgcgacaaggatcgcatttaac 4674894  T
Q  201 ctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||| ||||||||  |||||| ||||||||||||||||||||||||||    
T  4674893 ctagcaaggcattctgtaaatgggtagctcgcgaggcgagagcctct 4674847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 4185855 - 4185610
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  4185855 tataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgtttaacatcatcaacatcattggattaaac 4185756  T
Q  101 aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaac 200  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||    
T  4185755 aatt-agactcactggaacatcaacaacatgctaggcaacttagttcttaacatctaagatcaactcacaacaactcgtgcggcaaggatcgcatttaac 4185657  T
Q  201 ctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||| ||||||||  | |||| ||||||||||||||||||||||||||    
T  4185656 ctagcaaggcattctataaatgggtagctcgcgaggcgagagcctct 4185610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 4186454 - 4186611
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |          ||||||||| |||||||||    
T  4186454 tataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgt---------tcaacatcattggattaaac 4186544  T
Q  101 aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctca 168  Q
     | ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||||    
T  4186545 -agttagactcactggaacatcaacaacatgctaggcaacttagttcttaacatctaagatcaactca 4186611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 4189203 - 4189290
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||    
T  4189203 atcaactcacaacaactcgtgcgacaacgatcgcatttaacctagcaaggcattctgtaaatgggtagctcgcgaggcgagagcctct 4189290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 27333238 - 27333071
Alignment:
Q  80 aacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgt 179  Q
    ||||||| ||| |||||| |||||| || || |||| |||| ||||| |||| ||  ||| ||||||  |||| ||||| |||| |||||| ||||||||    
T  27333238 aacaacaacattggattatacaattcaggcttactgaaacagcaacatcaagataaacaatttagtttctaacctctaagatcaactcacatcaactcgt 27333139  T
Q  180 gcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||||||||||| ||||||||||||||| ||||  |||||  ||| || |||||||||||||||||||    
T  27333138 gcgacaaggatcacatttaacctaacaaagcattctgtaattgggcagttcgcgaggcgagagcctct 27333071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 27393978 - 27393811
Alignment:
Q  80 aacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgt 179  Q
    ||||||| ||| |||||| |||||| || || |||| |||| ||||| |||| ||  ||| ||||||  |||| ||||| |||| |||||| ||||||||    
T  27393978 aacaacaacattggattatacaattcaggcttactgaaacagcaacatcaagataaacaatttagtttctaacctctaagatcaactcacatcaactcgt 27393879  T
Q  180 gcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||||||||||| ||||||||||||||| ||||  |||||  ||| || |||||||||||||||||||    
T  27393878 gcgacaaggatcacatttaacctaacaaagcattctgtaattgggcagttcgcgaggcgagagcctct 27393811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 22080718 - 22080576
Alignment:
Q  55 aatgtttatacatttatataacatcaacaacatcatcggattaaa-caatttagactcactggaacatcaacagcaagctaggcaacttagttcttaaca 153  Q
    ||||| |||||||||||||||||| |||||||||||  | | | | |||||||| || |||| |||| ||| |||||| || |||||||||||  ||||     
T  22080718 aatgtatatacatttatataacattaacaacatcattaggtcatatcaatttaggcttactgaaacaacaagagcaagataagcaacttagtttctaacc 22080619  T
Q  154 tctaaaatcatctcacaacaactcgtgcgacaaggatcgcatt 196  Q
    ||||| |||| |||||| |||||||||||||||||||||||||    
T  22080618 tctaagatcaactcacatcaactcgtgcgacaaggatcgcatt 22080576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 23019535 - 23019713
Alignment:
Q  41 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaac 140  Q
    ||||||| ||||| ||||| |||||| ||||||||||| ||||||  |||  ||||| | | || || || |||| |||| |||||||||| ||  ||||    
T  23019535 aacataattcatgtaatgtatatacaattatataacattaacaacgacattagattatatagttcaggcttactgaaacaacaacagcaagataaacaac 23019634  T
Q  141 ttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaa 219  Q
    ||||||  |||| || || |||| |||||| |||||||| |||||| |||||||||||||||||| | |||| ||||||    
T  23019635 ttagtttctaacctccaagatcaactcacatcaactcgttcgacaaagatcgcatttaacctaaccaagcattttgtaa 23019713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 19652393 - 19652529
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||||||||  ||||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| ||||||||||| ||| |||||||     
T  19652393 actggaacaataacagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttatcctaaacaaggt 19652492  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    || ||||||   | |||| ||||||||||||||||||    
T  19652493 attttgtaactagttagcccgcgaggcgagagcctct 19652529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 1561501 - 1561602
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    ||||||| || ||||||||| ||  ||||||||||  |||| ||||  |||| |||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  1561501 actggaatattaacagcaagataaacaacttagtttctaacctctaggatcaactcacatcaactcgtgcgacaaagatcgcatttaacctaaacaaggc 1561600  T
Q  211 at 212  Q
    ||    
T  1561601 at 1561602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 247
Target Start/End: Original strand, 19668566 - 19668707
Alignment:
Q  106 agactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaac 205  Q
    ||||| |||| |||| |||||||||| ||  ||||||||||  | || || || |||| |||||| ||||||||||||||| | || |||||||||||||    
T  19668566 agacttactgaaacaacaacagcaagataaacaacttagtttcttacctccaagatcaactcacatcaactcgtgcgacaaaggtcacatttaacctaac 19668665  T
Q  206 aaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||||  |  |||||  ||  ||||||||||||||||||||||    
T  19668666 aaggtgttctgtaattggacagctcgcgaggcgagagcctct 19668707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 28496395 - 28496256
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||||||||| ||||||||| ||  ||||||||||  |||  ||||| |||| |||||| ||||||||||||||| ||||||| ||||||| ||||||||    
T  28496395 actggaacattaacagcaaggtaaacaacttagtttctaaactctaagatcaactcacatcaactcgtgcgacaaagatcgca-ttaacctaaacaaggc 28496297  T
Q  211 atgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    ||  ||||| |   ||| ||||||||||||||||||||||||    
T  28496296 attctgtaacacaagta-ctcgcgaggcgagagcctctgctc 28496256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 29808806 - 29808667
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||||||||| ||||||||| ||  ||||||||||  |||  ||||| |||| |||||| ||||||||||||||| ||||||| ||||||| ||||||||    
T  29808806 actggaacattaacagcaaggtaaacaacttagtttctaaactctaagatcaactcacatcaactcgtgcgacaaagatcgca-ttaacctaaacaaggc 29808708  T
Q  211 atgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    ||  ||||| |   ||| ||||||||||||||||||||||||    
T  29808707 attctgtaacacaagta-ctcgcgaggcgagagcctctgctc 29808667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 21939635 - 21939722
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| |||||||||||||||||||||| |||||||||| |||||| |||  ||||| |   || |||||||||||||||||||||||||    
T  21939635 ctcataacaactcgtgcgacaaggatcacatttaacctaaacaagacattctgtaatactagt-gctcgcgaggcgagagcctctgctc 21939722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 9165 - 9410
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  9165 tataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgtttaacatcatcaacatcattggattaaac 9264  T
Q  101 aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaac 200  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  9265 aatt-agactcactggaacatcaacagcatgctaggcaacttagttcttaacatctaagatcaactcacaacaactcgtgcgacaaggatcgcatttaac 9363  T
Q  201 ctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||| ||||||||  |||||| ||||||||||||||||||||||||||    
T  9364 ctagcaaggcattctgtaaatgggtagctcgcgaggcgagagcctct 9410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21161802 - 21161933
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  21161802 tataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatacaatgtttatacacttatataacatcaacgacatcattggattaaac 21161901  T
Q  101 aatttagactcactggaacatcaacagcaagc 132  Q
    || |||| ||||||||||||||||||||||||    
T  21161902 aaattaggctcactggaacatcaacagcaagc 21161933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 21161937 - 21162103
Alignment:
Q  84 acatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcga 183  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||  ||||||| |||||||||||||||||| |||||    
T  21161937 acatcattggattaaacaaattaggctcactggaacatcaacagcaagccaggcaactgagttcttgtcatctaagatcatctcacaacaactcatgcga 21162036  T
Q  184 caaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||||||| ||  |||||  |||||||||  ||     |||| |||||||||||||||||||||||||    
T  21162037 caaggatcaca-ctaaccctacaaggcattctggttcagggttgctcgcgaggcgagagcctctgctc 21162103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 52927903 - 52927803
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggca 211  Q
    ||||||||| ||| |||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  52927903 actggaacaacaatagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacctaacaaggca 52927804  T
Q  212 t 212  Q
    |    
T  52927803 t 52927803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 22921865 - 22921654
Alignment:
Q  38 atcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac-aatttagactcactggaacatcaacagcaagctagg 136  Q
    ||||||| || ||||  ||||| |||||| ||||||||||| ||||||| |||  ||| | |  |||| || || |||| |||| |||||||||| ||      
T  22921865 atcaacaaaattcatataatgtatatacaattatataacattaacaacaacattagatcatattaattcaggcttactgaaacaacaacagcaagataaa 22921766  T
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaa-cctaacaaggcatgttgtaaaggggtagctcgcgag 235  Q
    ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| |||||||||||| || ||||||||||  |||||   || || |||||||    
T  22921765 caacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacccaaacaaggcattctgtaactaggcagttcgcgag 22921666  T
Q  236 gcgagagcctct 247  Q
    ||||||||||||    
T  22921665 gcgagagcctct 22921654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 49261565 - 49261675
Alignment:
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||  |||| || || |||| |||||| ||||||||||||||| |||||| |||||||| ||||||||||  |||||  || ||||||||||||    
T  49261565 aacttagtttctaacctccaagatcaactcacatcaactcgtgcgacaaagatcgcttttaacctaaacaaggcattctgtaactggttagctcgcgagg 49261664  T
Q  237 cgagagcctct 247  Q
    |||||||||||    
T  49261665 cgagagcctct 49261675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 21754247 - 21754374
Alignment:
Q  124 acagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgt-aaagg 222  Q
    |||||||| ||  ||||||||||  |||| ||| | |||| |||||| |||||||||||||||||||| |||||||||||||||||||   ||| |||      
T  21754247 acagcaagataaacaacttagtttctaacctctgagatcaactcacatcaactcgtgcgacaaggatcacatttaacctaacaaggcagtctgtaaaaca 21754346  T
Q  223 ggtagctcgcgaggcgagagcctctgctc 251  Q
     ||| ||||||||||||||||||||||||    
T  21754347 agta-ctcgcgaggcgagagcctctgctc 21754374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 33681211 - 33681347
Alignment:
Q  116 gaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa-caaggcatgt 214  Q
    ||||| ||||| |||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||| ||||| ||||||||||||| ||| |||||||       
T  33681211 gaacaacaacaacaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgtgacaaagatcgcatttaacataagcaaggcactc 33681310  T
Q  215 tgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||||  |||||  |||||||||||||||||||||||    
T  33681311 tgtaactgggtaattcgcgaggcgagagcctctgctc 33681347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 28194306 - 28194235
Alignment:
Q  177 cgtgcgacaaggatcgcatttaacctaa-caaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||||||||| |||||||| |||||||| |||| ||| ||||||| ||||||||||||||||||||||||||    
T  28194306 cgtgcgacaaagatcgcatgtaacctaaacaagacattttgtaaatgggtagctcgcgaggcgagagcctct 28194235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 21896154 - 21896074
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgt 217  Q
    ||||||||||  | |||||||| |||| |||||| ||||||||||||||| | || |||||||||||||||||||| ||||    
T  21896154 caacttagtttcttacatctaagatcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaaggcattttgt 21896074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 35981583 - 35981473
Alignment:
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||  |||| || || |||| |||||| ||| ||||||||||| |||||| |||||||| ||||||||||  |||||   | ||||||||||||    
T  35981583 aacttagtttctaacctccaagatcaactcacatcaattcgtgcgacaaagatcgcttttaacctaaacaaggcattctgtaactagttagctcgcgagg 35981484  T
Q  237 cgagagcctct 247  Q
    |||||||||||    
T  35981483 cgagagcctct 35981473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 22237828 - 22237929
Alignment:
Q  113 ctggaacatcaa-cagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||||||| ||| ||||||| ||  ||||||||||  |||| ||||| |||| |||||| |||||||||||| || ||||||||||||||| ||||||||    
T  22237828 ctggaacaacaatcagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgaaaaagatcgcatttaacctaaacaaggc 22237927  T
Q  211 at 212  Q
    ||    
T  22237928 at 22237929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 12271772 - 12271847
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcat 212  Q
    ||||||||||  | || ||||| |||| |||||| ||||||||||||||| | || ||||||||||||||||||||    
T  12271772 caacttagtttcttacctctaagatcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaaggcat 12271847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 20637074 - 20637184
Alignment:
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa-caaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||  |||| || || |||| |||||| |||||| |||||||| |||||| |||||||||| |||| |||  |||||  |  ||||||||||||    
T  20637074 aacttagtttctaacctccaagatcaactcacatcaactcatgcgacaaagatcgcttttaacctaaacaagacattctgtaactgattagctcgcgagg 20637173  T
Q  237 cgagagcctct 247  Q
    |||||||||||    
T  20637174 cgagagcctct 20637184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 21861490 - 21861390
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggca 211  Q
    |||| |||| ||| |||||| ||  ||||||||||  | || ||||| |||| |||||| |||||||||||||||   || |||||||||||||||||||    
T  21861490 actgaaacaacaatagcaagataaacaacttagtttcttacctctaagatcaactcacatcaactcgtgcgacaaatgtcacatttaacctaacaaggca 21861391  T
Q  212 t 212  Q
    |    
T  21861390 t 21861390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20248366 - 20248438
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaactt-aatatcatcaacataaatcatgcaatgtttatacatttatata 74  Q
    |||||||||||||||||||| ||| |||||| |||||||  ||||||| ||||| ||||| |||||| |||||||    
T  20248366 tataacaatatcgaatgcaaatcaacaacttaaatatca--aacataagtcatgtaatgtatatacaattatata 20248438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 20248501 - 20248611
Alignment:
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||  |||| ||||| ||||  | ||| ||||| |||||||||| |||||||||||||| || |||||||  |||||   | ||||||||||||    
T  20248501 aacttagtttctaacctctaagatcaatttacatcaacttgtgcgacaagaatcgcatttaacctaaataaggcattctgtaactagttagctcgcgagg 20248600  T
Q  237 cgagagcctct 247  Q
    ||| |||||||    
T  20248601 cgatagcctct 20248611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 16368159 - 16368110
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaagg 209  Q
    |||| |||||| ||||||||||||||| | || |||||||||||||||||    
T  16368159 atcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaagg 16368110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 67832 - 68080
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    |||||||||||||||||||| ||| |||| |   |  |||||||||| ||||  ||||| |||||| ||||||||||| ||||||| |||  ||| | |     
T  67832 tataacaatatcgaatgcaaatcaacaacatctcaatatcaacataattcatataatgtatatacaattatataacattaacaacaacattagatcatat 67931  T
Q  101 -aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaa 199  Q
     |||| || ||||||| |||| |||||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||| ||||||||||||||||||||||    
T  67932 taattcaggctcactgaaacaacaacagcaagataaacaacttagtttctaacctctaagatcaactcacatcaacttgtgcgacaaggatcgcatttaa 68031  T
Q  200 cct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||| ||||||||||  |||||  || |||||||||||||||||||||||    
T  68032 cctaaacaaggcattctgtaactggttagctcgcgaggcgagagcctct 68080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 247
Target Start/End: Original strand, 16056456 - 16056662
Alignment:
Q  41 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaac 140  Q
    ||||||| ||||| ||||| |||||| ||||||||||| ||||||| |||  ||||| |  ||| || || || | |||| ||||| |||| ||  ||||    
T  16056456 aacataattcatgtaatgtatatacaattatataacattaacaacaacattagattatatcattcaggcttaccgaaacaacaacatcaagataaacaac 16056555  T
Q  141 ttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgag 240  Q
    ||||||  | || ||||| |||| |||||| |||||||||| |||| |||||||||||||||||||||||||  |||||  ||||| |||||||||||||    
T  16056556 ttagtttcttacctctaagatcaactcacatcaactcgtgctacaaagatcgcatttaacctaacaaggcattctgtaactgggtaactcgcgaggcgag 16056655  T
Q  241 agcctct 247  Q
    |||||||    
T  16056656 agcctct 16056662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 16219751 - 16219538
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||||||| |  ||  |||||| ||||| ||||| ||||| |||||| ||||||||||| ||||||| |||  |||||     
T  16219751 tataacaatatcgaatgcaagtcatcaacatcttaaacatcaaacataattcatgtaatgtatatacaattatataacattaacaacaacattagattat 16219652  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    | |||| || || |||| |||| |||||||||| ||  ||||||||||  |||| || || |||| || ||| ||||| ||||||||| |||||||||||    
T  16219651 ataattcaggcttactgaaacaacaacagcaagataaacaacttagtttctaacctccaagatcaactaacatcaacttgtgcgacaaagatcgcattta 16219552  T
Q  199 acctaacaaggcat 212  Q
    ||||||||||||||    
T  16219551 acctaacaaggcat 16219538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 247
Target Start/End: Original strand, 22073043 - 22073250
Alignment:
Q  41 aacataaa-tcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaa 139  Q
    |||||||| ||||| ||||| ||| || ||||||||||| ||||||| |||  ||||| | |||| || || |||| |||| ||||| ||||  |  |||    
T  22073043 aacataaactcatgtaatgtatatgcaattatataacattaacaacaacattagattatataattcaggcttactgaaacaacaacatcaagacaaacaa 22073142  T
Q  140 cttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcga 239  Q
    |||||||| | || | ||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||  |||||  ||||| ||||||||||||    
T  22073143 cttagttccttacctgtaagatcaactcacatcaactcgtgcgacaaggatcgcatttaacctaacaaagcattctgtaactgggtaactcgcgaggcga 22073242  T
Q  240 gagcctct 247  Q
    | ||||||    
T  22073243 gggcctct 22073250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 247
Target Start/End: Original strand, 16324186 - 16324340
Alignment:
Q  93 gattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcg 192  Q
    ||||| |||||| || || |||| |||| |||||||||| |   ||||||||||  |||| ||||| |||| |||||| |||||| |||||||||||||     
T  16324186 gattatacaattcaggcttactgaaacaacaacagcaagatcaacaacttagtttctaacctctaagatcaactcacatcaactcatgcgacaaggatca 16324285  T
Q  193 catttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||||||||||||||||||||  |||||  ||| || |||| ||||||| ||||||    
T  16324286 catttaacctaacaaggcattctgtaactgggcagttcgcaaggcgagggcctct 16324340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 44014265 - 44014508
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac 100  Q
    |||||||||||||||||||| ||| || || || || |||||||||| ||||  ||||| |||||| ||||||| ||| || |||| |||  ||| | |     
T  44014265 tataacaatatcgaatgcaaatcaacatctcaa-at-atcaacataattcatataatgtatatacagttatataccattaaaaacaacattagatcatat 44014362  T
Q  101 -aatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaa 199  Q
     |||| || || |||| |||| |||||||||| ||  |||||||||| ||||| ||| |  ||| |||||| ||| ||||||||||| ||||||||||||    
T  44014363 taattcaggcttactgaaacaacaacagcaagataa-caacttagtttttaacctctga--tcaactcacatcaattcgtgcgacaatgatcgcatttaa 44014459  T
Q  200 cct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||| ||||||||||  |||||  || |||||||||||||||||||||||    
T  44014460 cctaaacaaggcattctgtaaccggttagctcgcgaggcgagagcctct 44014508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 47831894 - 47832143
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||||||| | |||  |||||| ||||| ||||  ||||| |||||| ||||||||||| | | ||| |||  |||||     
T  47831894 tataacaatatcgaatgcaagtcatcaacatcataaacatcaaacataattcatataatgtatatacaattatataacattagcgacaacattagattat 47831993  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    |||||| || || |||| |||| ||||| |||| ||   |||||||||  |||| || || |||| |||||| |||||||| |||||| |||| ||||||    
T  47831994 acaattcaggcttactgaaacaacaacaacaagataaataacttagtttctaacctccaagatcaactcacatcaactcgtccgacaaagatcacattta 47832093  T
Q  199 acct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| ||||| ||||  |||||  ||| || |||||||||||| ||||||    
T  47832094 acctaaacaaagcattctgtaactgggcagttcgcgaggcgagggcctct 47832143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 811165 - 810916
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||| ||| | |||  |||||| ||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  |||||     
T  811165 tataacaatatcgaatgcaagtcattaacatcataaacatcaaacataattcatgtaatgtatatacaattatataacattagcaacaacattagattat 811066  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    |||||| || || |||| |||  |||||||||| ||   |||||||||  |||| || ||  ||| |||||| ||||| | ||||||| |||||||||||    
T  811065 acaattcaggcttactgaaactacaacagcaagataaataacttagtttctaacttccaaggtcaactcacatcaacttgcgcgacaaagatcgcattta 810966  T
Q  199 acct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctct 247  Q
    || | |||||||||| |||||| |   ||| ||||||||||||||||||||    
T  810965 acttaaacaaggcattttgtaacataagta-ctcgcgaggcgagagcctct 810916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 15754810 - 15754709
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    ||||||| || ||||||||| ||  ||||||||||  |||| ||||  |||| |||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  15754810 actggaatattaacagcaagataaacaacttagtttctaacctctaggatcaactcacatcaactcgtgcgacaaagatcgcatttaacctaaacaaggc 15754711  T
Q  211 at 212  Q
    ||    
T  15754710 at 15754709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 9389592 - 9389482
Alignment:
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa-caaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||  |||| || || |||| |||||| ||||||||| ||||| |||||| |||||||||| ||||||||  |||||  |  ||||||||||||    
T  9389592 aacttagtttctaacctccaagatcaactcacatcaactcgtgtgacaaagatcgcttttaacctaaacaaggcattctgtaactgcttagctcgcgagg 9389493  T
Q  237 cgagagcctct 247  Q
    |||||||||||    
T  9389492 cgagagcctct 9389482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 34200983 - 34201083
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggca 211  Q
    ||||| |||| ||||||||| ||  ||||||||||  |||| ||||| |||| |||||| |||||||   |||| |||||||||||||||||| ||||||    
T  34200983 actgggacattaacagcaaggtaaacaacttagtttctaacctctaagatcaactcacatcaactcgaatgacagggatcgcatttaacctaaaaaggca 34201082  T
Q  212 t 212  Q
    |    
T  34201083 t 34201083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 15113168 - 15113243
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcat 212  Q
    ||||||||||  | || ||||| |||| |||||| ||||||||||||||| | || ||||||||||||||||||||    
T  15113168 caacttagtttcttacctctaagatcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaaggcat 15113243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 15116705 - 15116780
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcat 212  Q
    ||||||||||  | || ||||| |||| |||||| ||||||||||||||| | || ||||||||||||||||||||    
T  15116705 caacttagtttcttacctctaagatcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaaggcat 15116780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 11995951 - 11995813
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggca 211  Q
    ||||| |||| ||||||||| ||  ||| ||||||  |||| ||||| || | |||||| |||||||  |||||| ||||||||||||||||| ||||||    
T  11995951 actgggacattaacagcaaggtaaacaaattagtttctaacctctaagataaactcacatcaactcgaacgacaaagatcgcatttaacctaaaaaggca 11995852  T
Q  212 tgttgtaaaggggtagctcgcgaggcgagagcctctgct 250  Q
    |  |||||       ||||||||||||||||||||||||    
T  11995851 ttctgtaacacaaatgctcgcgaggcgagagcctctgct 11995813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 2832174 - 2832087
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| |||||||||||||||||||||| |||||||||| |||||| |||  ||||| |   || |||||||||||||||||||||||||    
T  2832174 ctcataacaactcgtgcgacaaggatcacatttaacctaaacaagacattctgtaatactagt-gctcgcgaggcgagagcctctgctc 2832087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 2529922 - 2529883
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacctaa 204  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  2529922 ctcataacaactcgtgcgacaaagatcgcatttaacctaa 2529883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 9751419 - 9751332
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||||| |||||||||||| || ||||||||||  |||||       |||||||||||||||||||||||||    
T  9751419 ctcataacaactcgtgcgacaaagatcgcatttaaactaaacaaggcattctgtaacacaagcgctcgcgaggcgagagcctctgctc 9751332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 39267515 - 39267467
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcat 212  Q
    |||| ||||||||||||||||| |||| |||||||||| ||||||||||    
T  39267515 ctcataacaactcgtgcgacaaagatcacatttaacctaaacaaggcat 39267467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 10614 - 10862
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catc-aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||||||| |   |  |||| ||||||| ||||| ||||| |||||| |||||| |||| ||||||| |||  |||||     
T  10614 tataacaatatcgaatgcaagtcatcaacatctcaaacatcgaacataattcatgtaatgtatatacaattatatgacattaacaacaacattagattat 10713  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    | |||| || || |||| |||| |||||||||| ||  ||||||||||  | || ||||| |||| |||||| ||||||||||||||  |||||||||||    
T  10714 ataattcaggcttactgaaacaacaacagcaagataaacaacttagtttcttacctctaagatcaactcacatcaactcgtgcgacagagatcgcattta 10813  T
Q  199 acctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||||||||||||| ||| ||   |||| ||||||||||||||||||||    
T  10814 acctaacaaggcattttggaactaggtaactcgcgaggcgagagcctct 10862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 6520455 - 6520702
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaa 99  Q
    |||||||||||||||||||| |||||||| | |||  ||||||||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  ||||| |    
T  6520455 tataacaatatcgaatgcaagtcatcaacatcataaacatcaacataattcatgtaatgtatatacaattatataacattagcaacaacattagattata 6520554  T
Q  100 caatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaa 199  Q
    ||||| || || |||| |||| |||||||||| ||   |||||||||  |||| || || |||| |||||| |||||| ||| |||| ||||||||||||    
T  6520555 caattcaggcttactgaaacaacaacagcaagataaataacttagtttctaacctccaagatcaactcacatcaactcatgcaacaaagatcgcatttaa 6520654  T
Q  200 cctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||||||| ||||  |||||  ||| || | |||||||||| ||||||    
T  6520655 cctaacaaagcattctgtaattgggcagtttgcgaggcgagggcctct 6520702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 38855247 - 38855037
Alignment:
Q  38 atcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggc 137  Q
    |||||||||| ||||  ||||| |||||| ||||||||||| | ||||| |||  ||||| |||||| || || |||| |||| |||||||||| ||  |    
T  38855247 atcaacataattcatataatgtatatacaattatataacattagcaacaacattagattatacaattcaggcttactgaaacaacaacagcaagataaac 38855148  T
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa-caaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||| |||  || || ||||  ||||| ||||||||||||||| |||||  |||||||||| ||||||||  |||||  ||| |  ||||||||    
T  38855147 aacttagttcctaatgtccaagatcaattcacatcaactcgtgcgacaaagatcgtgtttaacctaagcaaggcattctgtaactgggcaattcgcgagg 38855048  T
Q  237 cgagagcctct 247  Q
    |||| ||||||    
T  38855047 cgagggcctct 38855037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 23760737 - 23760655
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaa 219  Q
    |||||||||| ||||| ||||| |||| |||||| ||||| ||||||||| ||||||||||| ||||||||||||| ||||||    
T  23760737 caacttagtttttaacctctaagatcaactcacatcaacttgtgcgacaaagatcgcatttatcctaacaaggcattttgtaa 23760655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 26355596 - 26355485
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgag 235  Q
    ||||||||||  |||| ||||| |||| |||||| ||||| ||||||||| ||||||||||||| | ||||||||||  |||||   | ||||||| |||    
T  26355596 caacttagtttctaacctctaagatcaactcacatcaacttgtgcgacaaagatcgcatttaacataaacaaggcattctgtaactagttagctcgtgag 26355497  T
Q  236 gcgagagcctct 247  Q
    ||||||||||||    
T  26355496 gcgagagcctct 26355485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 247
Target Start/End: Original strand, 21285734 - 21285932
Alignment:
Q  49 tcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttct 148  Q
    ||||| ||||| |||||| ||||||| ||| |||||||  ||  ||||| | |||| || || |||| |||| ||||| |||| ||    ||||||||      
T  21285734 tcatgtaatgtatatacaattatatatcattaacaacaatattagattatataattcaggcttactgaaacaacaacaacaagataaagcacttagtttc 21285833  T
Q  149 taacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    | || ||||| |||| |||||| |||||||||||| || |||||||||||||||||||| ||||  |||||  ||| | || |||||||||| ||||||    
T  21285834 ttacctctaagatcaactcacatcaactcgtgcgataaagatcgcatttaacctaacaaagcattctgtaactgggcaacttgcgaggcgagggcctct 21285932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 21255444 - 21255519
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcat 212  Q
    ||||||||||| |||| ||||| || | |||||| |||||||  |||||| ||||||||||||||||| |||||||    
T  21255444 caacttagttcctaacctctaagataaactcacatcaactcgaacgacaaagatcgcatttaacctaaaaaggcat 21255519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 39834095 - 39834166
Alignment:
Q  177 cgtgcgacaaggatcgcatttaacctaa-caaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| ||||| ||||||||||||| ||| ||||| ||  |||||| ||||||||||||||||||||||||||    
T  39834095 cgtgggacaaagatcgcatttaacttaaacaaggtattctgtaaatgggtagctcgcgaggcgagagcctct 39834166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 21249606 - 21249720
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgagg 236  Q
    ||||||||||| |||| ||||| || | |||||| ||||| |  |||||| ||||||||||||||||| |||||||  |||||       ||||||||||    
T  21249606 caacttagttcctaacctctaagataaactcacatcaacttgaacgacaaagatcgcatttaacctaaaaaggcattctgtaacacaaatgctcgcgagg 21249705  T
Q  237 cgagagcctctgctc 251  Q
    |||||||||||||||    
T  21249706 cgagagcctctgctc 21249720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 21673928 - 21674004
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcat 212  Q
    |||||||||| ||||| ||||| |||| ||||||  |||| ||||||||| ||||||||||| ||| ||||||||||    
T  21673928 caacttagtttttaacctctaatatcaactcacattaacttgtgcgacaaagatcgcatttatcctaaacaaggcat 21674004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 22364910 - 22364959
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaagg 209  Q
    |||| |||||| ||||||||||||||| | || |||||||||||||||||    
T  22364910 atcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaagg 22364959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 21329531 - 21329282
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||| ||| |||||||| | |||  |||||| ||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  |||||     
T  21329531 tataacaatatcgaattcaagtcatcaacatcataaacatcaaacataattcatgtaatgtatatacaattatataacattagcaacaacattagattat 21329432  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    |||||| || || |||| |||| ||||| |||| ||  ||||||||||  | || ||||| |||| |||||| ||||||||||||||| |||||||||||    
T  21329431 acaattcaggcttactgaaacaacaacaacaagataaacaacttagtttcttacctctaagatcaactcacatcaactcgtgcgacaaagatcgcattta 21329332  T
Q  199 acct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| ||||||||||  |||||   ||||  |||||||||||||||||||    
T  21329331 acctaaacaaggcattctgtaactaggtaattcgcgaggcgagagcctct 21329282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 26012027 - 26011856
Alignment:
Q  41 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaac 140  Q
    ||||||| ||||| ||||| |||||| ||||||||||||||||||| |||| ||||| | | || || || |||| |||| ||| | |||| ||  ||||    
T  26012027 aacataattcatgtaatgtatatacaattatataacatcaacaacaacatcagattatatagttcaggcttactgaaacaacaataacaagataaacaac 26011928  T
Q  141 ttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcat 212  Q
    ||||||  |||| || || |||| |||||| ||||||||| ||||| |||| ||||||||||||||| ||||    
T  26011927 ttagtttctaacctccaagatcaactcacatcaactcgtgtgacaaagatcacatttaacctaacaaagcat 26011856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 21502190 - 21501941
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||||| | |  ||  |||||| ||||| ||||| ||||| |||||| ||||||||||| ||||||| |||  ||| |     
T  21502190 tataacaatatcgaatgcaagtcatcatcatcttaaacatcaaacataattcatgtaatgtatatacaattatataacattaacaacaacattagatcat 21502091  T
Q  99 ac-aatttagactcactggaacatcaacagcaagctaggcaacttagttct-taacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatt 196  Q
    |  |||| || || |||| |||| |||||||||| ||  |||||||||| | |||| || || |||| || ||| |||||||||||||||  ||||||||    
T  21502090 attaattcaggcttactgaaacaacaacagcaagataaacaacttagttttctaacttccaagatcaactaacatcaactcgtgcgacaaatatcgcatt 21501991  T
Q  197 taacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||||| ||||||||||  || ||  ||||| ||||||||||||||||||||    
T  21501990 taacccaacaaggcattctg-aactgggtaactcgcgaggcgagagcctct 21501941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 5889033 - 5888962
Alignment:
Q  177 cgtgcgacaaggatcgcatttaacctaa-caaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||||||||| ||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||    
T  5889033 cgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaaatgggtagctcgcgaggcgagagcctct 5888962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 22959456 - 22959320
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||||||||  |||| |||| ||  |||||| ||| ||||| ||||| |||| |||||| ||||| |||| ||||| |||||||||||||| ||||||||    
T  22959456 actggaacaaaaacaacaagataaacaacttggtttttaacctctaagatcaactcacatcaacttgtgcaacaagaatcgcatttaacctaaacaaggc 22959357  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||  |||||   | |||||||||||||||||||||||    
T  22959356 attctgtaactagttagctcgcgaggcgagagcctct 22959320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 21565746 - 21565882
Alignment:
Q  116 gaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgt 214  Q
    ||||| ||||| |||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| |||||||||| || | |||||| |||      
T  21565746 gaacaacaacaacaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcattttacataaacaagtcattc 21565845  T
Q  215 tgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||||   | |||||| ||||||||||||||||||||    
T  21565846 tgtaactagttagctcacgaggcgagagcctctgctc 21565882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 21741440 - 21741330
Alignment:
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||  |||| || || |||| |||||| ||||||||||||||| |||||| |||||||| |||||| |||  |||||  || |||||| |||||    
T  21741440 aacttagtttctaacctccaagatcaactcacatcaactcgtgcgacaaagatcgcttttaacctaaacaagacattatgtaactggttagctcacgagg 21741341  T
Q  237 cgagagcctct 247  Q
    |||||||||||    
T  21741340 cgagagcctct 21741330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 22120062 - 22119975
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  22120062 ctcataacaactcgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaatactagt-gctcgcgaggcgagagcctctgctc 22119975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 21871440 - 21871358
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| |||||||| ||||||||||||||| ||||||||| ||||||||  ||||   || ||||||||||| || ||||||||    
T  21871440 ctcataacaactcatgcgacaaggatcgcgtttaacctagcaaggcattctgtatttggttagctcgcgagccgggagcctct 21871358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 21875720 - 21875638
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| |||||||| ||||||||||||||| ||||||||| ||||||||  ||||   || ||||||||||| || ||||||||    
T  21875720 ctcataacaactcatgcgacaaggatcgcgtttaacctagcaaggcattctgtatttggttagctcgcgagccgggagcctct 21875638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 24767206 - 24767119
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||||| |||| |||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  24767206 ctcataacaactcgtgcgacaaagatcacatttaacctaaacaaggcattctgtaatactagt-gctcgcgaggcgagagcctctgctc 24767119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12853 - 13074
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||||||| | |||  |||||| ||||| ||||| ||||| |||||| ||||||||||| || |||| |||  ||| |     
T  12853 tataacaatatcgaatgcaagtcatcaacatcataaacatcaaacataattcatgtaatgtatatacaattatataacattaataacaacattagatcat 12952  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    | |||| || || ||||||||| |||||||||| ||  | ||||||||  |||| ||||| |||| |||||| ||||||||||||||| ||| |||||||    
T  12953 ataattcaggcttactggaacaacaacagcaagataaaccacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagattgcattta 13052  T
Q  199 acct-aacaaggcatgttgtaa 219  Q
    |||| |||||||||| ||||||    
T  13053 acctaaacaaggcattttgtaa 13074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 130105 - 130245
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    ||||||||| |||||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| ||||||||||| ||| ||||||||    
T  130105 actggaacaacaacagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttatcctaaacaaggc 130204  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    || ||||||   | |||||||||||||||||||||||||||    
T  130205 attttgtaactagttagctcgcgaggcgagagcctctgctc 130245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 247
Target Start/End: Original strand, 32664 - 32870
Alignment:
Q  41 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaac 140  Q
    ||||||| ||||| ||||| ||||||  |||||||||| ||||| | |||  ||||| | |||| || || |||| ||||  |||| |||| ||  ||||    
T  32664 aacataattcatgtaatgtatatacaactatataacattaacaaaaacattagattatataattcaggcttactgaaacaataacaacaagataaacaac 32763  T
Q  141 ttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgag 240  Q
    ||||||  | || ||||| |||| |||||| ||||||||||||||| |||||||||||||| ||||||||||  |||||  |||||||||||||||||||    
T  32764 ttagtttcttacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacccaacaaggcattctgtaactgggtagctcgcgaggcgag 32863  T
Q  241 agcctct 247  Q
     ||||||    
T  32864 ggcctct 32870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 13026 - 13274
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||||||| | |||  |||||| ||||| || || ||||| |||||| ||||||||||| | ||||| |||  |||||     
T  13026 tataacaatatcgaatgcaagtcatcaacatcataaacatcaaacataattcgtgtaatgtatatacaattatataacattagcaacaacattagattat 13125  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
     ||||| || || |||| |||| |||||||||| ||   |||||||||  |||  || |  |||| |||||| ||||||||| ||||| |||| ||||||    
T  13126 ccaattcaggcttactgaaacaacaacagcaagataaataacttagtttctaatctccatgatcaactcacatcaactcgtgtgacaaagatcacattta 13225  T
Q  199 acctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||||||||||||||  |||||  || |||||||||||||||| ||||||    
T  13226 acctaacaaggcattctgtaactggttagctcgcgaggcgagggcctct 13274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 18110 - 18061
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaagg 209  Q
    ||||||||||| ||||||||||||||| | || |||||||||||||||||    
T  18110 atcatctcacatcaactcgtgcgacaaaggtcacatttaacctaacaagg 18061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 39706322 - 39706074
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaa 99  Q
    |||||||||||||||||||| |||| ||| | |||  ||||||||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  ||| | |    
T  39706322 tataacaatatcgaatgcaagtcatgaacatcataaacatcaacataattcatgtaatgtatatacaattatataacattagcaacaacattagatcata 39706223  T
Q  100 caatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaa 199  Q
     |||| || || |||  |||| |||||||||| ||  ||||||| ||| |||  || || |||| |||||| ||||||||||||||| ||||||||||||    
T  39706222 taattcaggcttactaaaacaacaacagcaagataaacaacttaattcctaatctccaagatcaactcacatcaactcgtgcgacaaagatcgcatttaa 39706123  T
Q  200 cct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||| ||||| ||||  |||||  ||| || |||||||||||| ||||||    
T  39706122 cctaaacaaagcattctgtaactgggcagttcgcgaggcgagggcctct 39706074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 12774197 - 12774337
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    ||||||||| |||||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  12774197 actggaacaacaacagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaggatcgcatttaacctaaacaaggc 12774296  T
Q  211 atgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |   ||||| |   ||| ||||||||||||||||||||||||    
T  12774297 agtctgtaacacaagta-ctcgcgaggcgagagcctctgctc 12774337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 15190563 - 15190651
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| |||||| ||||||||||||||| |||||| |||||||| ||||||||||  |||||  || |||||||||||||||||||||||    
T  15190563 atcaactcacatcaactcgtgcgacaaagatcgcttttaacctaaacaaggcattctgtaactggttagctcgcgaggcgagagcctct 15190651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 15099574 - 15099684
Alignment:
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa-caaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||  |||| || || |||| |||||| |||||| |||||||| |||||| |||||||||| |||| |||  |||||  || ||||||||||||    
T  15099574 aacttagtttctaacctccaagatcaactcacatcaactcatgcgacaaagatcgcttttaacctaaacaagacattctgtaactggttagctcgcgagg 15099673  T
Q  237 cgagagcctct 247  Q
    |||||||||||    
T  15099674 cgagagcctct 15099684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 8846572 - 8846708
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    ||||||||| ||||  |||| ||  ||||||||||  |||  |||||  ||| |||||| ||||||||||||||| ||||||||||||| | |||||| |    
T  8846572 actggaacaacaactacaagataaacaacttagtttctaatctctaagttcaactcacatcaactcgtgcgacaaagatcgcatttaacataaacaagac 8846671  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||  |||||   | |||||||||||||||||||||||    
T  8846672 attctgtaactagttagctcgcgaggcgagagcctct 8846708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 24028993 - 24029080
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  24028993 ctcataacaactcgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaatactagt-gctcgcgaggcgagagcctctgctc 24029080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 43198473 - 43198380
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaag 208  Q
    ||||||||||||||| |||| ||  |||||||||| || || ||||    || |||||| ||||||||| ||||| |||||||||||||||||||||    
T  43198473 actggaacatcaacaacaagataaacaacttagttttttacctctag---caactcacatcaactcgtgtgacaaagatcgcatttaacctaacaag 43198380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 22634082 - 22633995
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||| ||||||||||| ||||||||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  22634082 ctcataacaaatcgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaacacaagt-gctcgcgaggcgagagcctctgctc 22633995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 20157159 - 20157120
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacctaa 204  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  20157159 ctcataacaactcgtgcgacaaagatcgcatttaacctaa 20157120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 46640329 - 46640280
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaagg 209  Q
    |||| |||||| ||||||||||||||| | || |||||||||||||||||    
T  46640329 atcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaagg 46640280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 6157 - 5908
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||| ||| | |||  |||||| ||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  |||||     
T  6157 tataacaatatcgaatgcaagtcattaacatcataaacatcaaacataattcatgtaatgtatatacaattatataacattagcaacaacattagattat 6058  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    |||||| || || |||| ||||  ||||||||| ||   ||||||||| ||||| || || |||| || ||| ||||| | ||||||| |||||||||||    
T  6057 acaattcaggcttactgaaacaataacagcaagataaataacttagtttttaacctccaagatcaactaacatcaacttgcgcgacaaagatcgcattta 5958  T
Q  199 acct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| ||||||||||  |||||  |||||  |||||||||||| ||||||    
T  5957 acctaaacaaggcattatgtaactgggtaattcgcgaggcgagggcctct 5908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 7987 - 7864
Alignment:
Q  122 caacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaag 221  Q
    |||||||||| ||  ||||||||||  | || ||||| |||| |||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||      
T  7987 caacagcaagataaacaacttagtttcttacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaccctaacaaggcattttgtaact 7888  T
Q  222 gggtagctcgcgaggcgagagcct 245  Q
    ||| | ||||||||||||||||||    
T  7887 gggcaactcgcgaggcgagagcct 7864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0556 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0556
Description:

Target: scaffold0556; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 7009 - 7145
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    ||||||||| |||||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||| |||||||||| |||||||||||||| ||||||||    
T  7009 actggaacaacaacagcaagataaacaacttagtttctaacctctaagatcaactcacatcaacttgtgcgacaagaatcgcatttaacctaaacaaggc 7108  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||  |||||   | |||||||| ||||||||||||||    
T  7109 attctgtaactagttagctcgcaaggcgagagcctct 7145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0556; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 8144 - 8349
Alignment:
Q  41 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaac 140  Q
    ||||||| ||||| ||||| |||||| ||||||||||| ||||||| |||  ||||| | |||| || || |||| |||| |||||||| | ||  ||||    
T  8144 aacataattcatgtaatgtatatacaattatataacattaacaacaacattagattatataattcaggcttactgaaacaacaacagcaggataaacaac 8243  T
Q  141 ttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgag 240  Q
    ||||||| | || ||||| |||| |||||| ||||||||| ||||| |||| ||||  ||||||||| ||||  |||||  ||  | |||||||||||||    
T  8244 ttagttccttacctctaagatcaactcacatcaactcgtgagacaaagatcacattatacctaacaaagcattatgtaactggacaactcgcgaggcgag 8343  T
Q  241 agcctc 246  Q
     |||||    
T  8344 ggcctc 8349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 16097528 - 16097664
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    ||||||||| |||||||||| ||  ||||||||||  |||  ||||| |||| |||||| ||||||||||||||| ||||||||||||| | |||||| |    
T  16097528 actggaacaacaacagcaagataaacaacttagtttctaatctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacataaacaagac 16097627  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    || ||||||   | |||||||||||||||||||||||    
T  16097628 attttgtaactagttagctcgcgaggcgagagcctct 16097664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 14234574 - 14234825
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| |||||||| | |||  |||||| ||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  ||||||    
T  14234574 tataacaatatcgaatgcaagtcatcaacatcataaacatcaaacataattcatgtaatgtatatacaattatataacattagcaacaacattagattaa 14234673  T
Q  99 acaatttagactcactg--gaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatt 196  Q
    |||||| || || ||||   |||| ||||| |||| ||   |||||||||  |||| || || |||| || ||| ||||| || |||||| |||| ||||    
T  14234674 acaattcaggcttactgaacaacaacaacaacaagataaataacttagtttctaacctccaagatcaactaacatcaacttgttcgacaaagatcacatt 14234773  T
Q  197 taacct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||||| ||||||||||  |||||  || ||||| |||||||||| ||||||    
T  14234774 taacctaaacaaggcattctgtaactggttagcttgcgaggcgagggcctct 14234825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 15471011 - 15471215
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaactt----aatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggatt 96  Q
    |||||||||||||||||||| |||||||| |    || ||||  ||||||| ||||| ||||| |||||| ||||||||||| ||||||| | | | ||     
T  15471011 tataacaatatcgaatgcaagtcatcaacatctcaaacatca--aacataattcatgtaatgtatatacaattatataacattaacaacaacttag-atc 15471107  T
Q  97 aaacaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatt 196  Q
    | | |||| || || |||| |||| ||||| |||| ||  ||||||||||  |||| || || ||||||| ||| ||||||||||||||| |||||||||    
T  15471108 atataattcaggcttactgaaacaacaacaacaagataaacaacttagtttctaacctccaagatcatctaacatcaactcgtgcgacaaagatcgcatt 15471207  T
Q  197 taacctaa 204  Q
    ||||||||    
T  15471208 taacctaa 15471215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 1644605 - 1644465
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||||||||  |||| |||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||||||||||||||||| | ||||||||    
T  1644605 actggaacaataacaacaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaggatcgcatttaacttaaacaaggc 1644506  T
Q  211 atgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |  |||||| |   ||| ||||||||||||||||||||||||    
T  1644505 agtttgtaacacaagta-ctcgcgaggcgagagcctctgctc 1644465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 32307879 - 32308007
Alignment:
Q  124 acagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-ag 221  Q
    |||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||  ||||| |     
T  32307879 acagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacctaaacaaggcattatgtaacac 32307978  T
Q  222 gggtagctcgcgaggcgagagcctctgctc 251  Q
      ||| ||||||||||||||||||||||||    
T  32307979 aagta-ctcgcgaggcgagagcctctgctc 32308007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 49389551 - 49389459
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa 204  Q
    ||||||||| ||||| |||| ||  ||||||||||  |||| ||||| |||| | |||| |||||||||||||||||||||||||||||||||    
T  49389551 actggaacaacaacaacaagataaacaacttagtttctaacctctaagatcaacacacatcaactcgtgcgacaaggatcgcatttaacctaa 49389459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 12934221 - 12934141
Alignment:
Q  124 acagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa 204  Q
    |||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| |||||||||||||||||    
T  12934221 acagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacctaa 12934141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 16103979 - 16104071
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa 204  Q
    ||||||||| |||||||||| ||  ||||||||||  |||| ||||| || | |||||| ||||||||||||||| || ||||||||||||||    
T  16103979 actggaacaacaacagcaagataaacaacttagtttctaacctctaagattaactcacatcaactcgtgcgacaaagagcgcatttaacctaa 16104071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 12171990 - 12171891
Alignment:
Q  149 taacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| ||||| |||| |||||| ||||| |||||||||| |||||||||||||| ||||||||||  |||||   | ||| |||||||||||||||||||    
T  12171990 taacctctaagatcaactcacatcaacttgtgcgacaagaatcgcatttaacctaaacaaggcattctgtaactagttagatcgcgaggcgagagcctct 12171891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 1465306 - 1465196
Alignment:
Q  138 aacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa-caaggcatgttgtaaaggggtagctcgcgagg 236  Q
    |||||||||  |||| || || |||| |||||| ||||||||||||||| |||  | |||||||||| ||||||||  |||||  || ||||||||||||    
T  1465306 aacttagtttctaacctccaagatcaactcacatcaactcgtgcgacaaagattacttttaacctaaacaaggcattctgtaactggttagctcgcgagg 1465207  T
Q  237 cgagagcctct 247  Q
    |||||||||||    
T  1465206 cgagagcctct 1465196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 49667994 - 49667866
Alignment:
Q  124 acagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-ag 221  Q
    |||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| ||||| ||||||||| |||||||||   ||||| |     
T  49667994 acagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgtatttaacctaaacaaggcagtctgtaacac 49667895  T
Q  222 gggtagctcgcgaggcgagagcctctgctc 251  Q
      ||| ||||||||||||||||||||||||    
T  49667894 aagta-ctcgcgaggcgagagcctctgctc 49667866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 14665857 - 14665944
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  14665857 ctcataacaactcgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaatactagt-gctcgcgaggcgagagcctctgctc 14665944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 14735370 - 14735457
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  14735370 ctcataacaactcgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaatactagt-gctcgcgaggcgagagcctctgctc 14735457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 247
Target Start/End: Complemental strand, 37251156 - 37250953
Alignment:
Q  44 ataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaactta 143  Q
    |||| ||||| ||||  ||||||||||||| |||| |  |||| ||||  || | | |||| ||||| ||||||||| |||||| ||| ||  |||||||    
T  37251156 ataattcatgtaatgcatatacatttatatcacattattaacaacatcaaatcatataattcagacttactggaacaacaacagtaagataaacaactta 37251057  T
Q  144 gttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagc 243  Q
    |||  | ||  | || |||| |||||| ||||||||||||||| | || | |||||||||||||||  |  |||||  ||| | ||||||||||||||||    
T  37251056 gtttcttacccccaagatcaactcacatcaactcgtgcgacaaaggtcacttttaacctaacaaggtgttctgtaactgggcaactcgcgaggcgagagc 37250957  T
Q  244 ctct 247  Q
    ||||    
T  37250956 ctct 37250953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 12340008 - 12340091
Alignment:
Q  169 caacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  12340008 caacaactcgtgcgacaaagatcacatttaacctaaacaaggcattatgtaatactagt-gctcgcgaggcgagagcctctgctc 12340091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 13210225 - 13210149
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcat 212  Q
    ||||||||||  |||| ||||  |||| |||||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  13210225 caacttagtttctaacctctaggatcaactcacatcaactcgtgcgacaaagatcacatttaacctaaacaaggcat 13210149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 13210361 - 13210285
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaa-tatcatcaacataaatcatgcaatgtttatacatttatataacat 78  Q
    ||||| |||||||||||||| ||| |||||||| |||||  ||||||| ||||| ||||| |||||| |||||||||||    
T  13210361 tataataatatcgaatgcaaatcaacaacttaaatatca--aacataagtcatgtaatgtatatacaattatataacat 13210285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 4588657 - 4588609
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcat 212  Q
    |||| ||||||||||||||||| | ||||||||||||| ||||||||||    
T  4588657 ctcataacaactcgtgcgacaaagctcgcatttaacctaaacaaggcat 4588609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 14669012 - 14669060
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcat 212  Q
    |||| ||||||||||||||||| ||||| ||||||||| ||||||||||    
T  14669012 ctcataacaactcgtgcgacaaagatcgaatttaacctaaacaaggcat 14669060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 10462 - 10327
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggca 211  Q
    ||||||||| ||||| |||| ||  ||||||||||  |||| ||||| |||| |||||| |||||||||| |||| ||||||||||||||||||||||||    
T  10462 actggaacaacaacaacaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcaacaaagatcgcatttaacctaacaaggca 10363  T
Q  212 tgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
       |||||  ||  | ||||||||||||||||||||    
T  10362 gtatgtaacaggacaactcgcgaggcgagagcctct 10327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 40170 - 39959
Alignment:
Q  38 atcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac-aatttagactcactggaacatcaacagcaagctagg 136  Q
    |||||||||| ||||  ||||| |||||| ||||||| ||| ||||||| |||  ||| | |  |||| || || |||| |||| ||||| |||| ||      
T  40170 atcaacataattcatataatgtatatacaattatataccattaacaacaacataagatcatattaattcaggcttactgaaacaacaacatcaaggtaaa 40071  T
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgag 235  Q
    ||||||||||  |||| ||||| |||| |||||| |||||||||| |||| ||||||||||||||| || ||||||| ||||||   | |||||||||||    
T  40070 caacttagtttctaacctctaagatcaactcacatcaactcgtgcaacaaagatcgcatttaacctaaataaggcattttgtaactagttagctcgcgag 39971  T
Q  236 gcgagagcctct 247  Q
    ||||||||||||    
T  39970 gcgagagcctct 39959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 100502 - 100682
Alignment:
Q  41 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac-aatttagactcactggaacatcaacagcaagctaggcaa 139  Q
    ||||||| ||||  ||||| |||||| ||||||||||| ||||||| |||  ||| | |  ||||||| || |||| |||| ||||| |||| ||  |||    
T  100502 aacataattcatataatgtatatacaattatataacattaacaacaacattagatcatattaatttaggcttactgaaacaacaacaacaagataaacaa 100601  T
Q  140 cttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaaccta-acaaggcatgttgtaa 219  Q
    |||||||  |||| ||||| | ||  ||||| ||||||||||||||| ||||||||||||| || ||||||||| ||||||    
T  100602 cttagtttctaacctctaagagcaagtcacatcaactcgtgcgacaaagatcgcatttaacttagacaaggcattttgtaa 100682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 101618 - 101685
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa 204  Q
    ||||||||||  |||| ||||| |||| |||||| |||||||||||||||||||| ||||||||||||    
T  101618 caacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaggatcacatttaacctaa 101685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 28406182 - 28406278
Alignment:
Q  117 aacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcat 212  Q
    |||| |||||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  28406182 aacaacaacagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaggatcgcatttaacctaaacaaggcat 28406278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 22134126 - 22134046
Alignment:
Q  124 acagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa 204  Q
    |||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| |||||||||||||||||    
T  22134126 acagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacctaa 22134046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 23207526 - 23207613
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| |||||| ||||||||||||||| | || |||||||||||||||||  |  |||||  ||| | ||||| ||||||||||||||    
T  23207526 atcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaaggtgttctgtaactgggcaactcgcaaggcgagagcctct 23207613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 23791523 - 23791572
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaagg 209  Q
    |||| |||||| ||||||||||||||| | || |||||||||||||||||    
T  23791523 atcaactcacatcaactcgtgcgacaaaggtcacatttaacctaacaagg 23791572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1068 - 820
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||| ||||||||||| |||||||| | |||  |||||| ||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  |||| |    
T  1068 tataacaacatcgaatgcaagtcatcaacatcataaacatcaaacataattcatgtaatgtatatacaattatataacattagcaacaacattagattta 969  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
     ||||| || || |||| |||| ||||| |||| ||   |||||||||  |||| || || |||| || ||| ||||| | ||||||| |||||||||||    
T  968 -caattcaggcttactgaaacaacaacaacaagataaataacttagtttctaacttccaagatcaactaacatcaacttgcgcgacaaagatcgcattta 870  T
Q  199 acct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    |||| ||||||||||  |||||  |||||  |||||||||||| ||||||    
T  869 acctaaacaaggcattatgtaactgggtaattcgcgaggcgagggcctct 820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 28720 - 28592
Alignment:
Q  124 acagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-ag 221  Q
    |||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||  ||||| |     
T  28720 acagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaacac 28621  T
Q  222 gggtagctcgcgaggcgagagcctctgctc 251  Q
      ||| ||||||||||||||||||||||||    
T  28620 aagta-ctcgcgaggcgagagcctctgctc 28592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 132851 - 132991
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    ||||||||| |||||| ||| ||  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| |||| |||||||||| ||||||||    
T  132851 actggaacaacaacagtaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcacatttaacctaaacaaggc 132950  T
Q  211 atgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    ||  ||||| |   ||| ||||||||||||||||||||||||    
T  132951 attatgtaagacaagta-ctcgcgaggcgagagcctctgctc 132991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 62320 - 62479
Alignment:
Q  38 atcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggatta-aacaatttagactcactggaacatcaacagcaagctagg 136  Q
    |||||||||| ||||  ||||| |||||| ||||||||||| |||||||||||  | | | ||||||| || || |||| |||| |||||||||| ||      
T  62320 atcaacataattcatataatgtatatacaattatataacattaacaacatcattagttcataacaattcaggcttactgaaacaacaacagcaagataaa 62419  T
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatt 196  Q
    ||||||||||  |||| ||||| |||| |||||| | | ||| |||||||||||||||||    
T  62420 caacttagtttctaacctctaagatcaactcacatcgaatcgggcgacaaggatcgcatt 62479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 19464 - 19604
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa-caaggc 210  Q
    |||| |||| ||||| |||| ||  ||||||||||  |||| ||||| |||| |||||| ||||| ||||||||||||||||||||||| ||| |||| |    
T  19464 actgaaacaacaacatcaagataaacaacttagtttctaacctctaagatcaactcacatcaacttgtgcgacaaggatcgcatttaacataagcaagac 19563  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    ||  |||||  ||||   |||||||||||||||||||||||    
T  19564 attctgtaactgggtcattcgcgaggcgagagcctctgctc 19604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1984 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1984
Description:

Target: scaffold1984; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 326 - 468
Alignment:
Q  109 ctcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaa-caa 207  Q
    |||||| ||||| |||||||||| ||  ||||| ||||  |||| ||||| |||| |||||| |||||||| |||||| ||||||||||||| ||| |||    
T  326 ctcactagaacaacaacagcaagataa-caactcagtttctaacctctaagatcaactcacatcaactcgtacgacaaagatcgcatttaacataagcaa 424  T
Q  208 ggcatgttgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    | |||  |||||  ||||  ||||||||||||||||||||||||    
T  425 gacattctgtaactgggtcactcgcgaggcgagagcctctgctc 468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1765 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1765
Description:

Target: scaffold1765; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 1211 - 1382
Alignment:
Q  41 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaac 140  Q
    ||||||| ||||| ||||| ||||||  |||||||||| ||||||| ||||  || | | |  | || || ||||||||| ||||| |||| ||   |||    
T  1211 aacataattcatggaatgtatatacaactatataacattaacaacaacatcaaatcatatacatcagtcttactggaacaacaacaacaagataaaaaac 1310  T
Q  141 ttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggcat 212  Q
    ||||||  | || ||||| |||| |||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  1311 ttagtttcttacctctaagatcaactcacatcaactcgtgtgacaaagatcgcatttaacctaacaaggcat 1382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0621 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0621
Description:

Target: scaffold0621; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 6660 - 6842
Alignment:
Q  38 atcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac-aatttagactcactggaacatcaacagcaagctagg 136  Q
    |||||||||| ||||  ||||| |||||| ||||||| ||| ||||||| |||  ||| | |  |||| || || |||| |||| |||||||||| ||      
T  6660 atcaacataattcatataatgtatatacaattatataccattaacaacaacattagatcatattaattcaggcttactgaaacaacaacagcaagataa- 6758  T
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa 219  Q
    |||||||||| ||||| ||||| |||| |||||| ||||| ||||||||| ||||||||||| ||| |||||||||| ||||||    
T  6759 caacttagtttttaacctctaagatcaactcacatcaacttgtgcgacaaagatcgcatttatcctaaacaaggcattttgtaa 6842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0621; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 8669 - 8769
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggca 211  Q
    ||||||||| || ||||||| ||  ||||||||||  | || ||||| ||||  ||||| ||||||||||||||| | || |||||||||||||||||||    
T  8669 actggaacaacatcagcaagataaacaacttagtttcttacctctaagatcaattcacatcaactcgtgcgacaaaggtcacatttaacctaacaaggca 8768  T
Q  212 t 212  Q
    |    
T  8769 t 8769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 45688 - 45577
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgag 235  Q
    ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| ||||||||||| ||| |||||| |||  |||||   | |||||||||||    
T  45688 caacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttatcctaaacaagacattctgtaactagttagctcgcgag 45589  T
Q  236 gcgagagcctct 247  Q
    ||||||||||||    
T  45588 gcgagagcctct 45577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 7982 - 7844
Alignment:
Q  109 ctcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaag 208  Q
    |||||||||||| || ||||||| ||  ||||||||||    || ||||| |||| |||||| ||| || |||||||| |||||||||||||||| ||||    
T  7982 ctcactggaacaacatcagcaagataaacaacttagtttcatacctctaagatcaactcacatcaattcttgcgacaaagatcgcatttaacctagcaag 7883  T
Q  209 gcatgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||||  || ||   |||| ||||||||||||||||||||    
T  7882 gcattctggaacaaggtaactcgcgaggcgagagcctct 7844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1257 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1257
Description:

Target: scaffold1257; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 2139 - 2038
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||| |||| |||||||||| ||  ||||||| ||  |||| ||||| |||| |||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  2139 actgaaacaacaacagcaagataaacaacttattttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatttaacctaaacaaggc 2040  T
Q  211 at 212  Q
    ||    
T  2039 at 2038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 15753 - 15617
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||| |||| |||||||||| ||  ||||||||||  |||  || || |||| |||||| ||||||||||||||| |||| |||||||| | ||||||||    
T  15753 actgaaacaacaacagcaagataaacaacttagtttctaatctccaagatcaactcacatcaactcgtgcgacaaagatcacatttaacataaacaaggc 15654  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
    ||  |||||  || |||||||||||||||| ||||||    
T  15653 attctgtaactggttagctcgcgaggcgagggcctct 15617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 2199 - 2085
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcga 234  Q
    ||||||||||  |||| ||||| || | |||||| | ||||||||||||||||||||||||||||| ||||||||||  ||||| |   ||| |||||||    
T  2199 caacttagtttctaacctctaagattaactcacatccactcgtgcgacaaggatcgcatttaacctaaacaaggcattctgtaacacaagta-ctcgcga 2101  T
Q  235 ggcgagagcctctgct 250  Q
    ||||||||||||||||    
T  2100 ggcgagagcctctgct 2085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 2725 - 2640
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattt 197  Q
    |||| |||| |||||||||| ||  ||||||||||  |||| ||||| |||| |||||| |||||||||||||||||||| |||||    
T  2725 actgaaacaacaacagcaagataaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaggatcacattt 2640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 12760 - 12865
Alignment:
Q  104 ttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaaccta 203  Q
    ||||||| |||| |||| |||||||||| ||  ||||||||||  | || ||||| |||| |||||| | ||||||||||||| | || |||||||||||    
T  12760 ttagacttactgaaacaacaacagcaagataaacaacttagtttattacctctaagatcaactcacatccactcgtgcgacaaaggtcacatttaaccta 12859  T
Q  204 acaagg 209  Q
    ||||||    
T  12860 acaagg 12865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 6698 - 6903
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| | |||| | | |||  |||||| ||||| ||||| ||||| |||||| ||||||||||| ||||||| |||  ||| |     
T  6698 tataacaatatcgaatgcaagttatcatcattataaacatcaaacataattcatgtaatgtatatacaattatataacattaacaacaacattagatcat 6797  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    | |||| |  || |||  |||| |||||||||| ||  |||||||| |  |||  || ||  ||| |||||| ||||||||||||||| |||||||||||    
T  6798 ataattcaagcttactaaaacaacaacagcaagataaacaacttagattctaatctccaagttcaactcacatcaactcgtgcgacaaagatcgcattta 6897  T
Q  199 acctaa 204  Q
    ||||||    
T  6898 acctaa 6903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 14078 - 14283
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaacttaatat-catcaa-cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaa 98  Q
    |||||||||||||||||||| | |||| | | |||  |||||| ||||| ||||| ||||| |||||| ||||||||||| ||||||| |||  ||| |     
T  14078 tataacaatatcgaatgcaagttatcatcattataaacatcaaacataattcatgtaatgtatatacaattatataacattaacaacaacattagatcat 14177  T
Q  99 acaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcattta 198  Q
    | |||| |  || |||  |||| |||||||||| ||  |||||||| |  |||  || ||  ||| |||||| ||||||||||||||| |||||||||||    
T  14178 ataattcaagcttactaaaacaacaacagcaagataaacaacttagattctaatctccaagttcaactcacatcaactcgtgcgacaaagatcgcattta 14277  T
Q  199 acctaa 204  Q
    ||||||    
T  14278 acctaa 14283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 22704 - 22509
Alignment:
Q  1 tataacaatatcgaatgcaattcatcaactt----aatatcatcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggatt 96  Q
    |||||||||||||||||||| |||||||| |    |||||||  ||||||| ||||| ||||| |||||| ||||||||||| |  |||| ||||  | |    
T  22704 tataacaatatcgaatgcaagtcatcaacatctcaaatatca--aacataattcatgtaatgtatatacaattatataacattataaacaacatc--aat 22609  T
Q  97 aaacaatttagactcactggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatt 196  Q
    |  ||  | || || ||||||||| ||||| ||||  |  ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| |||||||||    
T  22608 atgca--tcagtcttactggaacagcaacatcaagacaaacaacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcgcatt 22511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 80201 - 80114
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaaaggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||| | ||||||||||||||| ||||||||||  |||||     | |||||||||||||||||||||||||    
T  80201 ctcataacaactcgtgcgacgaagatcgcatttaacctaaacaaggcattctgtaatactattgctcgcgaggcgagagcctctgctc 80114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0420 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0420
Description:

Target: scaffold0420; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 6155 - 6106
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaagg 209  Q
    ||||||||||| ||||||||||||||| | || |||||||||||||||||    
T  6155 atcatctcacatcaactcgtgcgacaaaggtcacatttaacctaacaagg 6106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 8156 - 8076
Alignment:
Q  172 caactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    ||||||||||||||| ||||||||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  8156 caactcgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaacactagt-gctcgcgaggcgagagcctctgctc 8076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 14618 - 14517
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggc 210  Q
    |||| |||| |||||||||| ||  ||||||||||  |||| ||||| |||| |||||| ||||| ||||||| | ||||||||||| ||| ||||||||    
T  14618 actgaaacaacaacagcaagatatacaacttagtttctaacctctaagatcaactcacatcaacttgtgcgaccaagatcgcatttatcctaaacaaggc 14519  T
Q  211 at 212  Q
    ||    
T  14518 at 14517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 1718 - 1583
Alignment:
Q  112 actggaacatcaacagcaagctaggcaacttagtt-cttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaaggc 210  Q
    ||||||||| ||| || ||| |||||||||||||| |||| | || || |||| |||||| ||||||||||||||| | || ||| |||||||||||||     
T  1718 actggaacaacaatagtaagataggcaacttagtttcttaccctc-aagatcaactcacatcaactcgtgcgacaaaggtcacatgtaacctaacaaggt 1620  T
Q  211 atgttgtaaaggggtagctcgcgaggcgagagcctct 247  Q
     |  |||||  ||| | ||| ||||||||||||||||    
T  1619 gttctgtaattgggcatctcacgaggcgagagcctct 1583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 288 - 367
Alignment:
Q  173 aactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||||||||||||| ||||||||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  288 aactcgtgcgacaaagatcgcatttaacctaaacaaggcattctgtaatactagt-gctcgcgaggcgagagcctctgctc 367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 212
Target Start/End: Complemental strand, 2641 - 2465
Alignment:
Q  38 atcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaac-aatttagactcactggaacatcaacagcaagctagg 136  Q
    |||||||||| ||||  ||||| |||||| ||||||| ||| ||||||| |||  ||| | |  |||| || || |||| |||| || ||||||| ||      
T  2641 atcaacataattcatataatgtatatacaattatataccattaacaacaacattagatcatattaattcaggcttactgaaacaacatcagcaagataaa 2542  T
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcat 212  Q
    ||||||| ||  |||| ||||| |||| |||||| ||||| ||||||||| ||||||||||| ||| ||||||||||    
T  2541 caacttaatttctaacctctaagatcaactcacatcaacttgtgcgacaaagatcgcatttatcctaaacaaggcat 2465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 10162 - 10249
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| |||||||||| |||||| ||||||||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  10162 ctcataacaactcgtacgacaaagatcgcatttaacctaaacaaggcattctgtaacacaagt-gctcgcgaggcgagagcctctgctc 10249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 9703 - 9616
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||||| |||| |||||||||| ||||||||||  ||||| |   || |||||||||||||||||||||||||    
T  9703 ctcataacaactcgtgcgacaaagatcacatttaacctaaacaaggcattctgtaatactagt-gctcgcgaggcgagagcctctgctc 9616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 207388 - 207301
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacct-aacaaggcatgttgtaa-aggggtagctcgcgaggcgagagcctctgctc 251  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||| ||||  ||||| |   || |||||||||||||||||||||||||    
T  207388 ctcataacaactcgtgcgacaaagatcgcatttaacctaaacaaagcattgtgtaatactagt-gctcgcgaggcgagagcctctgctc 207301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 160908 - 160976
Alignment:
Q  137 caacttagttcttaacatctaaaatcatctcacaacaactcgtgcgacaaggatcgcatttaacctaac 205  Q
    ||||||||||  |||| ||||| |||| |||||| ||||||||||||||| |||| |||||| ||||||    
T  160908 caacttagtttctaacctctaagatcaactcacatcaactcgtgcgacaaagatcacatttatcctaac 160976  T

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Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 162974 - 162940
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgca 194  Q
    |||||||||||||| ||||||||||||||||||||    
T  162974 atcatctcacaacatctcgtgcgacaaggatcgca 162940  T

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Target: scaffold0221 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 12677 - 12638
Alignment:
Q  165 ctcacaacaactcgtgcgacaaggatcgcatttaacctaa 204  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  12677 ctcataacaactcgtgcgacaagaatcgcatttaacctaa 12638  T

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Target: scaffold1403 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1403
Description:

Target: scaffold1403; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 797 - 846
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaagg 209  Q
    |||| |||||| ||||||||||||||| | || |||||||||||||||||    
T  797 atcaactcacatcaactcgtgcgacaaaggtctcatttaacctaacaagg 846  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 25354 - 25403
Alignment:
Q  160 atcatctcacaacaactcgtgcgacaaggatcgcatttaacctaacaagg 209  Q
    |||| |||||||||||||||||||||| | || |||||| ||||||||||    
T  25354 atcaactcacaacaactcgtgcgacaaaggtcacatttatcctaacaagg 25403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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