View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4372_low_3 (Length: 210)
Name: NF4372_low_3
Description: NF4372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4372_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 1864837 - 1865013
Alignment:
| Q |
20 |
tgttggataaataaaagaaattaatggactcgaaacaaataaaagcttcatcatttcctacatctaccggatttcagtatcacgttgttccatcaccacc |
119 |
Q |
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| T |
1864837 |
tgttggataaataaaagaaattaatggactcggaacaaataaaagtttcatcatttcctacatctatcggatttcagtatcacgttgttccatcaccacc |
1864936 |
T |
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| Q |
120 |
aaattttaatggatcacatatcaattctagtaggtttcttcttactttctgacacttatatgcaactctagtataat |
196 |
Q |
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| T |
1864937 |
aaattttaatggatcacatatcaattctagtaggtttcttcttactttctgacacttatatgcaactctagtataat |
1865013 |
T |
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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 51575794 - 51575688
Alignment:
| Q |
88 |
ggatttcagtatcacgttgttccatcaccaccaaattttaatggatcacatatcaattctagtaggtttcttcttactttctgacacttatatgcaactc |
187 |
Q |
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|||||||| |||| ||||||||||||| || ||||| |||||||||||||||| || |||||| | ||||||||| ||||| ||||||| ||||||||| |
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| T |
51575794 |
ggatttcatcatcatgttgttccatcactacaaaattctaatggatcacatatccatgctagtaagattcttcttattttctcacacttaaatgcaactc |
51575695 |
T |
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| Q |
188 |
tagtata |
194 |
Q |
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|| |||| |
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| T |
51575694 |
taatata |
51575688 |
T |
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