View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4372_low_4 (Length: 208)
Name: NF4372_low_4
Description: NF4372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4372_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 51575675 - 51575858
Alignment:
| Q |
19 |
acatgtcacattata--ttagagttgcatttaagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgataga |
116 |
Q |
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| T |
51575675 |
acatgtcacattatatattagagttgcatttaagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgatgga |
51575774 |
T |
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| Q |
117 |
acaacatgatgatgaaatccattagagataggtagagatgcaactatggtttgttccgagaccattaattgcctttgcttctcc |
200 |
Q |
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| T |
51575775 |
acaacatgatgatgaaatccattagagataggtagagatgcaactatggtttgttccgagaccgttaattgcctttgattctcc |
51575858 |
T |
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Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 1865021 - 1864855
Alignment:
| Q |
20 |
catgtcacattatattagagttgcatttaagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgatagaaca |
119 |
Q |
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| T |
1865021 |
catgtcatattatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaaca |
1864922 |
T |
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| Q |
120 |
acatgatgatgaaatccattagagataggtagagatgcaactatggtttgttccgagaccattaatt |
186 |
Q |
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| T |
1864921 |
acgtgatactgaaatccgatagatgtaggaaatgatgaaacttttatttgttccgagtccattaatt |
1864855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 35449820 - 35449915
Alignment:
| Q |
66 |
agaatcttactagcatggatatgtgatccattagaattttgtagtgatagaacaacatgatgatgaaatccattagagataggtagagatgcaact |
161 |
Q |
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| T |
35449820 |
agaaacttactagcgggggtaggtgttccattagaagtgggtagcgatgaaacatcatgataatgaaatccattagaggtaggtagtgatgcaact |
35449915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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