View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4373-Insertion-2 (Length: 675)
Name: NF4373-Insertion-2
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4373-Insertion-2 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 228 - 675
Target Start/End: Complemental strand, 150563 - 150121
Alignment:
| Q |
228 |
ttattttgctttgcttccagtttacatgtctctataatctatgacatatgatatacataacatgaagaatgaaaacttaatgtattatattggtgatgtt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
150563 |
ttattttgctttgcttccagtttacatgtctctataatctatgacatatgttatacataacaccaagaatgaaaacttaatgtatt-----ggtgatgtt |
150469 |
T |
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| Q |
328 |
tcagatttggacgaattggtatttacaagactcatctgtatggaagtccaagcatcattgtcattgcacctgctatatgcaagaaagtcttaattgatga |
427 |
Q |
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| T |
150468 |
tcagatttggacgaattggtatttacaagactcatctgtatggaagtccaagcatcattgtcattgcacctgctatatgcaagaaagtcttaattgatga |
150369 |
T |
|
| Q |
428 |
agtgacctttaaaattggttatccaaaagctgccactgaactagcaaaaagtaagttactaaatagtgaaaatggacgttttaaacgactagtcgcggct |
527 |
Q |
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| T |
150368 |
agtgacctttaaaattggttatccaaaagctgccactgaactagcaaaaagtaagttactaaatagtgaaaatggacgttttaaacgactagtcgcggct |
150269 |
T |
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| Q |
528 |
cctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacactctattg |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
150268 |
cctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacaccctgttg |
150169 |
T |
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| Q |
628 |
agttccttatggagatgagaaaagcttcttttgaattcgtcattcaca |
675 |
Q |
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| T |
150168 |
agttccttatggagatgagaaaagcttcttttgaattcgtcattcaca |
150121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 317 - 675
Target Start/End: Complemental strand, 130646 - 130288
Alignment:
| Q |
317 |
ttggtgatgtttcagatttggacgaattggtatttacaagactcatctgtatggaagtccaagcatcattgtcattgcacctgctatatgcaagaaagtc |
416 |
Q |
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| T |
130646 |
ttggtgatgtttcagatttggacgaactggtatttacaagactcatttgtatggaagtccaagcatcattgtcattgcacctgctatatgcaagaaagtc |
130547 |
T |
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| Q |
417 |
ttaattgatgaagtgacctttaaaattggttatccaaaagctgccactgaactagcaaaaagtaagttactaaatagtgaaaatggacgttttaaacgac |
516 |
Q |
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| T |
130546 |
ctaatagatgaagtgacttttaagattggttatccaaaatccgcccttgaattaggcgatagtaagattctacataaagaacgcggacgttttaaacaac |
130447 |
T |
|
| Q |
517 |
tagtcgcggctcctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaa |
616 |
Q |
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|||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130446 |
tagtatcatctcctatcaatggtcacaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaa |
130347 |
T |
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| Q |
617 |
acactctattgagttccttatggagatgagaaaagcttcttttgaattcgtcattcaca |
675 |
Q |
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| T |
130346 |
acaccctgttgagttccttacggagatgaagaaagcttcttttgaattcgtcattcaca |
130288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 150794 - 150651
Alignment:
| Q |
8 |
attatgatcttaaatttaaaaacaaacaatatccactgcctcccggtgatatgggatggccttttattggaaacctatggaccttcttcaaatatttctc |
107 |
Q |
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| T |
150794 |
attatgatcttaaatttaaaaacaaacaatatccactgcctcccggtgatatgggatggccttttattggaaacctatggaccttcttcaaatatttctc |
150695 |
T |
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| Q |
108 |
gtctggtcgcggtgaaacgttcatcaacaacattgttctcaagt |
151 |
Q |
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| T |
150694 |
gtctggtcgcggtgaaacgttcatcaacaacattgttcacaagt |
150651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 131498 - 131355
Alignment:
| Q |
8 |
attatgatcttaaatttaaaaacaaacaatatccactgcctcccggtgatatgggatggccttttattggaaacctatggaccttcttcaaatatttctc |
107 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| || ||| |||||||||||||||||| |
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| T |
131498 |
attatgatcttatatttaaaaacaaacaatatccactacctcctggtgacatgggatggcctttaattggaaatctttggtccttcttcaaatatttcta |
131399 |
T |
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| Q |
108 |
gtctggtcgcggtgaaacgttcatcaacaacattgttctcaagt |
151 |
Q |
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| T |
131398 |
ttctggtcgcggtgaaatgttcatcaacaacattattttcaagt |
131355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 527 - 675
Target Start/End: Original strand, 10304330 - 10304478
Alignment:
| Q |
527 |
tcctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacactctatt |
626 |
Q |
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||||||||||||| |||||||||||| || |||||||| |||||||| |||||||||||||||||| |||||||||| || || ||||||||| || || |
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| T |
10304330 |
tcctatcattggtaggaatgtattagtaaaatacttagaacgtattgaagatattgtgatcaacaagttagaagaattatccagtatgaaacaccctgtt |
10304429 |
T |
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| Q |
627 |
gagttccttatggagatgagaaaagcttcttttgaattcgtcattcaca |
675 |
Q |
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| T |
10304430 |
gagttcctcgtggagatgagaaaagcttcttttaaattcatcattcaca |
10304478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 317 - 457
Target Start/End: Original strand, 10304120 - 10304260
Alignment:
| Q |
317 |
ttggtgatgtttcagatttggacgaattggtatttacaagactcatctgtatggaagtccaagcatcattgtcattgcacctgctatatgcaagaaagtc |
416 |
Q |
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| T |
10304120 |
ttggtgatgtttcagatttggaagaacaggtatttacaagactcacttgtatggaagtccaagcatcattgtcattgcacctgatatatgcaagaaagtt |
10304219 |
T |
|
| Q |
417 |
ttaattgatgaagtgacctttaaaattggttatccaaaagc |
457 |
Q |
| |
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| T |
10304220 |
ctgattgatgatgtaaactttaagcatggttatccaaaagc |
10304260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 10303159 - 10303303
Alignment:
| Q |
8 |
attatgatcttaaatttaaaaacaaacaatatccactgcctcccggtgatatgggatggccttttattggaaacctatggaccttcttcaaatatttctc |
107 |
Q |
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| T |
10303159 |
attatgatcttaaatttaaaaaccaacaaaacccactgcctcctggtgacatgggatggccattagttggaaatctttggcccttcttcaaatatttttt |
10303258 |
T |
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| Q |
108 |
gtctggtcgcggtgaaacgttcatcaacaacattgttctcaagta |
152 |
Q |
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| T |
10303259 |
atctgggcgtgctgaaatgttcatcgacaacattgttctcaagta |
10303303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 892149 - 892191
Alignment:
| Q |
99 |
atatttctcgtctggtcgcggtgaaacgttcatcaacaacatt |
141 |
Q |
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| T |
892149 |
atatttctcgtatggtcgcggtgaaacgttcatcaacaacatt |
892191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 576 - 643
Target Start/End: Original strand, 892416 - 892482
Alignment:
| Q |
576 |
gatattgtgatcaacaagctagaagaattgtctagcatgaaacactctattgagttccttatggagat |
643 |
Q |
| |
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||||||||||||||||||||||||||||| || | |||| ||||| || ||||||||| ||||||||| |
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| T |
892416 |
gatattgtgatcaacaagctagaagaattatccatcatggaacaccctcttgagttcc-tatggagat |
892482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 317 - 646
Target Start/End: Complemental strand, 3959702 - 3959373
Alignment:
| Q |
317 |
ttggtgatgtttcagatttggacgaattggtatttacaagactcatctgtatggaagtccaagcatcattgtcattgcacctgctatatgcaagaaagtc |
416 |
Q |
| |
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||||||||||||||||| |||||||| |||||| |||||||||||| | ||||| | |||||||||||||||||||| ||| ||||| |||||||||||| |
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| T |
3959702 |
ttggtgatgtttcagatatggacgaagtggtatctacaagactcatttatatgggaatccaagcatcattgtcattgtaccagctatgtgcaagaaagtc |
3959603 |
T |
|
| Q |
417 |
ttaattgatgaagtgacctttaaaattggttatccaaaagctgccactgaactagcaaaaagtaagttactaaatagtgaaaatggacgttttaaacgac |
516 |
Q |
| |
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||| ||||||||| |||||||| |||||||||||||||| ||||| ||||||| | | || | ||||||||| |||| | |||||||| ||||||| |
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| T |
3959602 |
ctaaatgatgaagtaacctttaagcttggttatccaaaagccatcactgtactagcatacaatagggtactaaataatgaacacggacgtttaaaacgac |
3959503 |
T |
|
| Q |
517 |
tagtcgcggctcctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaa |
616 |
Q |
| |
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||||| |||||||||| ||| ||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3959502 |
tagtcacggctcctattgccggtaacaatgtatcaacaatgtatctagagcgtattgaggatattgtgatcaacaagcttgaagaattgtctagcatgaa |
3959403 |
T |
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| Q |
617 |
acactctattgagttccttatggagatgag |
646 |
Q |
| |
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|||| || ||||||| |||| |||||||| |
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| T |
3959402 |
acaccctgttgagtttcttaaagagatgag |
3959373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 3961891 - 3961758
Alignment:
| Q |
8 |
attatgatcttaaatttaaaaacaaacaatatccactgcctcccggtgatatgggatggccttttattggaaacctatggaccttcttcaaatatttctc |
107 |
Q |
| |
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|||||||| ||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||| ||||| || || ||| ||||||||||||||||||| |
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| T |
3961891 |
attatgatattaaatttagaaacaaacaatttccactacctcctggtgatatgggatggcctttaattggtaatctttggcccttcttcaaatatttctc |
3961792 |
T |
|
| Q |
108 |
gtctggtcgcggtgaaacgttcatcaacaacatt |
141 |
Q |
| |
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||||||||| |||| | ||||||||||||||| |
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| T |
3961791 |
atctggtcgccgtgatatattcatcaacaacatt |
3961758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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