View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4373-Insertion-3 (Length: 620)
Name: NF4373-Insertion-3
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4373-Insertion-3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 620
Target Start/End: Complemental strand, 18816775 - 18816164
Alignment:
| Q |
8 |
gattttcctcccttccccgcctttccagatacaggcgtctgaacagaactattggctgctgcagtggatccaggagtcatcctatcacctgaatcagctt |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18816775 |
gattttcctcctttccccgcctttccagatacaggcgtctgaacagaactattggctgctgcagtggacccaggagtcatcctatcacctgaatcagctt |
18816676 |
T |
|
| Q |
108 |
caaaatcagctgcttcactcttccgcttcaattgctgaaatgtatgaatataatagtaagttacaataaatagaaaagattatggattagtctaagcagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18816675 |
caaaatcagctgcttcactcttccgcttcaattgctgaaatgtgtgaatataatagtaagtaacaataaatagaaaagattatggattagtctaagcagg |
18816576 |
T |
|
| Q |
208 |
tgctcgcggagataacttggcttnnnnnnnnnngattatatagagtaagttagaatagtaagaatcgtattttcataaataatccattaaccataaatca |
307 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18816575 |
tgctcgcggagataagttgacttaaaaaaaaa-gattatatagagtaagttagaatagtaagaatcgtattttcataaataatccattaatcataaatca |
18816477 |
T |
|
| Q |
308 |
atgttgttaatctcggatattggtggagagcaaccgattatacaactgggatagtgcttgcgaggggaagggaaagaggggtagaagaggtgagaacaga |
407 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18816476 |
atgttgttaatctcggatattggtgcagagcaatcgattatacaactgggatagtgcttgcgaggggaagggaaagaggggtagaaaaggtgagaacaga |
18816377 |
T |
|
| Q |
408 |
ggtattttagccttctctatgtag-aaagggggtgtgggtagaaaaaagagagggtgtggaccaccattagactaacttaaagcctaatttcggaaaccc |
506 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18816376 |
ggtattttagtcttcactatgtagaaaagggggtgtcggtagaaaaaa-agggggtgtggaccaccattagactaacttaaagcctaatttcggaaaccc |
18816278 |
T |
|
| Q |
507 |
taaatttaaaatgttcccttcccgatattaaaaacttagatagctccacattgcagttacttttcctcctttcttgtttctactcgcgtcttccttgtac |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18816277 |
taaatttaaaatgttcccttcccgatattaaaaaattagatagctccacattgcagttacttttcctcctttcttgtttctactcgcgtctttcttgtac |
18816178 |
T |
|
| Q |
607 |
tccattgttctata |
620 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18816177 |
tccattgttctata |
18816164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University