View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4373-Insertion-4 (Length: 587)
Name: NF4373-Insertion-4
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4373-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 242 - 519
Target Start/End: Complemental strand, 7095325 - 7095048
Alignment:
| Q |
242 |
tcgacccaacaaatcgttgaaaccattcatttctgcaaccaaaggagccaaagcttccaaagtttcaatgctggtttcaagtgtgggaccgaattcacga |
341 |
Q |
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| T |
7095325 |
tcgacccaacaaatcgttgaaaccattcatttctgcaaccaaaggagccaaagcttccaaagtttcaatgctggtttcaagtgtgggaccgaattcacga |
7095226 |
T |
|
| Q |
342 |
ccattttttattgtttgaagagcttgtttcaatatttcactcatcacacctccaacagcacctccacttaatagatccgccatgcaactcttgttgtgtt |
441 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095225 |
ccatttttgattgtttgaagagcttgtttcaatatttcactcatcacacctccaacagcacctccacttaatagatccgccatgcaactcttgttgtgtt |
7095126 |
T |
|
| Q |
442 |
tgtaacaacgaaagtaatgatctgttttgttgtttttgtggaatcaaatgtttttccttacgagaaagaaatgcattt |
519 |
Q |
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| T |
7095125 |
tgtaacaacgaaagtaatgatctgtattgttgtttttgtggaatcaaatgtttttccttacgagaaagaaatgcattt |
7095048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 7095579 - 7095397
Alignment:
| Q |
8 |
catcaaaatctcaagaattccattcaccttagtcaacacctccatcaaatcccttctattctcaacttgaacattaacattcaaatgtctctttagccct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095579 |
catcaaaatctcaagaattccattcaccttagtcaacacctccatcaaatcccttctattctcaacttgaacattaacattcaaatgtctctttagccct |
7095480 |
T |
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| Q |
108 |
tcatctttcttcttaagctttccttggtaacgtgggaaagaaggaaagttccatcgagtaggcttcttgcttttttgtacaag |
190 |
Q |
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| T |
7095479 |
tcatctttcttcttaagctttccttggtaacgtgggaaagaaggaaagttccatcgagtaagcttcttgcttttttgcacaag |
7095397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 503 - 587
Target Start/End: Complemental strand, 7095029 - 7094945
Alignment:
| Q |
503 |
gagaaagaaatgcatttgaactctactaaaaaatgtttggtagacttggtgatttttggtctttcatgttgtctaagtttattca |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7095029 |
gagaaagaaatgcatttgaactctactaaaaaatgtttggtagacttggtgatttttggtctttcatgttgtcttagtttattca |
7094945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 6717594 - 6717725
Alignment:
| Q |
51 |
atcaaatcccttctattctcaacttgaacattaacattcaaatgtctctttagcccttcatctttcttcttaagctttccttggtaacgtgggaaagaag |
150 |
Q |
| |
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|||||||| || ||||||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
6717594 |
atcaaatcttttttattctcaagttgaacattaacagacaaatgtctctgaagtccttcatctttcttcttaagctttccttggtaacctggaaaagaaa |
6717693 |
T |
|
| Q |
151 |
gaaagttccatcgagtaggcttcttgcttttt |
182 |
Q |
| |
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| T |
6717694 |
gaaagttccataaagtaagcttcttacttttt |
6717725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 424
Target Start/End: Original strand, 6775052 - 6775226
Alignment:
| Q |
250 |
acaaatcgttgaaaccattcatttctgcaaccaaaggagccaaagcttccaaagtttcaatgctggtttcaagtgtgggaccgaattcacgaccattttt |
349 |
Q |
| |
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||||||| |||| | ||||||| ||| || ||||||||||||||| ||||||||||| ||||| | |||||| |||| ||| ||||| ||||| |||| |
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| T |
6775052 |
acaaatcattgacatcattcatctctttaatcaaaggagccaaagcatccaaagtttctatgcttgcttcaagagtggaaccaaattctcgacccttttg |
6775151 |
T |
|
| Q |
350 |
tattgtttgaagagcttgtttcaatatttcactcatcacacctccaacagcacctccacttaatagatccgccat |
424 |
Q |
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| T |
6775152 |
gattgtatgaagagcgtatttcagcaattctcccattccagctccaactgcacctccactcaataaatccgccat |
6775226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 6762427 - 6762562
Alignment:
| Q |
47 |
ctccatcaaatcccttctattctcaacttgaacattaacattcaaatgtctctttagcccttcatctttcttcttaagctttccttggtaacgtgggaaa |
146 |
Q |
| |
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|||||||||||| || ||||||| ||||| |||||||||||||| ||||||| ||| | |||| ||||||||||||||||||||||| ||| ||| |
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| T |
6762427 |
ctccatcaaatcatttttattctcgacttgcacattaacattcaagtgtctctcaagcttcgcgtcttgcttcttaagctttccttggtaacctggaaaa |
6762526 |
T |
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| Q |
147 |
gaaggaaagttccatcgagtaggcttcttgcttttt |
182 |
Q |
| |
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|| ||||||| | |||| |||||||||||||| |
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| T |
6762527 |
aaataaaagttcttccaagtaagcttcttgcttttt |
6762562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 6740682 - 6740720
Alignment:
| Q |
38 |
agtcaacacctccatcaaatcccttctattctcaacttg |
76 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
6740682 |
agtcaacacctccatcaaatcccttttattctcaacttg |
6740720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 366
Target Start/End: Original strand, 6717785 - 6717909
Alignment:
| Q |
242 |
tcgacccaacaaatcgttgaaaccattcatttctgcaaccaaaggagccaaagcttccaaagtttcaatgctggtttcaagtgtgggaccgaattcacga |
341 |
Q |
| |
|
|||| |||| ||||||||| || | || |||||| |||||||||||||||| | ||||||||| ||| | |||| || || ||||| ||||| ||| |
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| T |
6717785 |
tcgatccaagaaatcgttgtaaactttgatttctttaaccaaaggagccaaattgttcaaagtttctatgttcctttccagagtaggaccaaattctcga |
6717884 |
T |
|
| Q |
342 |
ccattttttattgtttgaagagctt |
366 |
Q |
| |
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|| ||||| |||||||||||||||| |
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| T |
6717885 |
ccctttttgattgtttgaagagctt |
6717909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 6725581 - 6725619
Alignment:
| Q |
38 |
agtcaacacctccatcaaatcccttctattctcaacttg |
76 |
Q |
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||||||||||||||||||||||||| |||| |||||||| |
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| T |
6725581 |
agtcaacacctccatcaaatcccttttattttcaacttg |
6725619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 6732460 - 6732496
Alignment:
| Q |
453 |
aagtaatgatctgttttgttgtttttgtggaatcaaa |
489 |
Q |
| |
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||||||| || |||||||||||||||||||||||||| |
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| T |
6732460 |
aagtaataatgtgttttgttgtttttgtggaatcaaa |
6732496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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