View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4373-Insertion-5 (Length: 506)

Name: NF4373-Insertion-5

Description: NF4373

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4373-Insertion-5

[»] chr5 (2 HSPs)

[»] chr3 (1 HSPs)

Alignment Details

Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 426; E-Value: 0

Query Start/End: Original strand, 8 - 506

Target Start/End: Original strand, 6608648 - 6609146

Alignment:

Q	8	aaattggtgtcggaatcagcttgatttggacatactctttgtaagttttgtagaagtgatgaatcaagtgatggatcagatttacccgagccaccaaagt	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6608648	aaattggtgtcggaatcagcttgatttggacatactctttgtaagttttgtagaagtgatgaatcaagtgatggatcagatttacccgagccaccaaagt	6608747	T

Q	108	cgaatagtcttggcttgaatgtaaagcattgagcaaacccgaaggtgtgtgaacctgtatatagttaatacacgcgtgaaatcggtcgcttcactaacta	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6608748	cgaatagtcttggcttgaatgtaaagcattgagcaaacccgaaggtgtgtgcacctgtatatagttaatacacgcgtgaaatcggtcgcttcactaacta	6608847	T

Q	208	gtactccattcggtctcatatgtaaaaattcnnnnnnnncagattcaatgaaattttaaggatttaaggtatgtctttttactactagcccaaacttttg	307	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6608848	gtaatccattcggtctcatatgtaaaaattcttttttttcagattcaatgaaattttaaggatttaaggtatgtctttttactactagcccaaacttttg	6608947	T

Q	308	gagttaaggatttaaacattaattgagaaatgttttgatgaccttatcaaataaaattatttgagacatatatttgctattcannnnnnncttttactag	407	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	6608948	gagttaaggatttaaacattaatagagaaatgttttgatgaccttatcagataaaattatatgagacatatatttgctattcattgttttcttttactag	6609047	T

Q	408	gccaactctaatgggttttatatgttattcatgttatgttacaaacattttcatacgaataattgtgaaggaagtaaacctgagagcactgctacatcc	506	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6609048	gccaactctaatgggttttatatgttgttcatgttatgttacaaacattttcatacaaataattgtgaaggaagtaaacctgagagcactgctacatcc	6609146	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2

Raw Score: 111; E-Value: 8e-56

Query Start/End: Original strand, 8 - 170

Target Start/End: Original strand, 6601235 - 6601397

Alignment:

Q	8	aaattggtgtcggaatcagcttgatttggacatactctttgtaagttttgtagaagtgatgaatcaagtgatggatcagatttacccgagccaccaaagt	107	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	6601235	aaattggagtcggaatcagcttgatttggacatactttttgtaagttctgtagaagtgaagaatcaagcgatggatcggatttaccggagccaccaaagt	6601334	T

Q	108	cgaatagtcttggcttgaatgtaaagcattgagcaaacccgaaggtgtgtgaacctgtatata	170	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	6601335	cgaatagccttggtttgaatgtaaagcattgcgcgaacccaaaggtgtgtgcacctgtatata	6601397	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 30; E-Value: 0.0000002

Query Start/End: Original strand, 465 - 506

Target Start/End: Complemental strand, 44803774 - 44803733

Alignment:

Q	465	aataattgtgaaggaagtaaacctgagagcactgctacatcc	506	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	44803774	aataattgtgaaggaagcaaacctgataacactgctacatcc	44803733	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]