View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4373_high_1 (Length: 707)
Name: NF4373_high_1
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4373_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Complemental strand, 6565951 - 6565254
Alignment:
| Q |
1 |
ccatttactagctttctactagaagcacttttggcaagagaaatctgaggcctagtggtagtagaattaagctcactttgagacaatgattttgaccttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565951 |
ccatttactagctttctactagaagcacttatggcaagagaaatctgaggcctagtggtagtagaattaagctcactttgagacaatgattttgaccttt |
6565852 |
T |
|
| Q |
101 |
gatgtttggatcctttgatggaattctgctcaatggagtcaatcgaattttctgcattcctcttggaggaaatgtacacagcttcctgatataaaccttg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565851 |
gatgtttggatcctttgatggaattctgctcaatggagtcaatcgaattttctgcattcctcttggaggaaatgtacacagcttcctgatataaaccttg |
6565752 |
T |
|
| Q |
201 |
tctgaaattcacaaccttctcttctaatcgaaccacctcttcctccaataccgcaacttcagccacaagctctaacgtctaaaatacacaatacacagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565751 |
tctgaaattcacaaccttctcttctaatcgaaccacctcttcctccaataccgcaacttcagccacaagctctaacgtctaaaatacacaatacacagtt |
6565652 |
T |
|
| Q |
301 |
tttcttactttcgatgtctatagatatcaaagatcaaaaacttaattctaattaagatatataccaaatgcattgaatacaattgatcagtgagatatag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565651 |
tttcttactttcgatgtctatagatatcaaagatcaaaaacttaattctaattaagatatataccaaatgcattgaatacaattgatcagtgagatatag |
6565552 |
T |
|
| Q |
401 |
tgaatacaattgatcgatcactgacttaatctacttacatgggaagggagataaggaggaagacgaggaagtgcgcccaaaggtctagtgagtgctcttt |
500 |
Q |
| |
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| T |
6565551 |
tgaatacaattgatcgatcactgacttaatctacttacatgggaagggagataaggaggaagacgaggaagtgcgcccaaaggtctagtgagtgctcttt |
6565452 |
T |
|
| Q |
501 |
ctaacactctatgaacattctcttcatgtcttagcttcctctttaacttatcaacctgcaaatttcgagcagcataataactacactgaaaaattgcaaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6565451 |
ctaacactctatgaacattctcttcatgtcttagcttcctctttaacttatcaacctgcaaatttcgagcagcataataactacactgaaaaattgcaaa |
6565352 |
T |
|
| Q |
601 |
tgatgtgtagaacaattaataatgcaaggaatatgttacactcacatcttgtatcaaagccattttcctttctcgacgtccttttttcaaagtattat |
698 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565351 |
tgatgtgtagaacaattaataatgcaaggaatatgttacactcacatcttgtatcaaagccattttcctttctcgacgtccttttttcaaagtattat |
6565254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 34260848 - 34260974
Alignment:
| Q |
146 |
aattttctgcattcctcttggaggaaatgtacacagcttcctgatataaaccttgtctgaaattcacaaccttctcttctaatcgaaccacctcttcctc |
245 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||| | | |||||| |||||||| |
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| T |
34260848 |
aattttcagcatttctctttgaggaaatgtaaacagcttcttgatataaaccttgtctgaaattcacaacttgttcttcaagcctaaccacttcttcctc |
34260947 |
T |
|
| Q |
246 |
caataccgcaacttcagccacaagctc |
272 |
Q |
| |
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||| || || |||||||| | |||||| |
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|
| T |
34260948 |
caacactgccacttcagctagaagctc |
34260974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 34261390 - 34261499
Alignment:
| Q |
449 |
agataaggaggaagacgaggaagtgcgcccaaaggtctagtgagtgctctttctaacactctatgaacattctcttcatgtcttagcttcctctttaact |
548 |
Q |
| |
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|||||||||||||||||||| | | || |||||||| || | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
34261390 |
agataaggaggaagacgaggcaaagatcctaaaggtcttgtaaatgctctttctaaagctctgtgaacattctcttcatgtcttagcttcctcttcaact |
34261489 |
T |
|
| Q |
549 |
tatcaacctg |
558 |
Q |
| |
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|||| ||||| |
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|
| T |
34261490 |
tatctacctg |
34261499 |
T |
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Back To:
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