View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4373_high_6 (Length: 342)

Name: NF4373_high_6
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4373_high_6
NF4373_high_6
[»] chr2 (46 HSPs)
chr2 (1-342)||(39458459-39458800)
chr2 (125-282)||(39390469-39390626)
chr2 (136-275)||(39603204-39603343)
chr2 (149-282)||(39458775-39458908)
chr2 (53-154)||(39473988-39474089)
chr2 (125-278)||(39390263-39390416)
chr2 (53-159)||(39136541-39136647)
chr2 (177-282)||(39222394-39222499)
chr2 (91-235)||(39415111-39415255)
chr2 (135-282)||(39602993-39603140)
chr2 (53-150)||(39152158-39152255)
chr2 (53-150)||(39416084-39416181)
chr2 (149-277)||(39473823-39473951)
chr2 (98-154)||(39390639-39390695)
chr2 (94-150)||(39422204-39422260)
chr2 (139-247)||(39451757-39451865)
chr2 (105-202)||(39192970-39193067)
chr2 (105-202)||(39198650-39198747)
chr2 (115-228)||(39221870-39221983)
chr2 (115-228)||(39222080-39222193)
chr2 (11-64)||(39390633-39390686)
chr2 (129-228)||(39222556-39222655)
chr2 (135-249)||(39192545-39192659)
chr2 (135-249)||(39198225-39198339)
chr2 (106-184)||(39389937-39390015)
chr2 (85-150)||(38792654-38792719)
chr2 (125-202)||(39390129-39390206)
chr2 (53-154)||(39487902-39488003)
chr2 (106-154)||(39415576-39415624)
chr2 (105-153)||(39467650-39467698)
chr2 (1-45)||(39474055-39474099)
chr2 (110-149)||(38792931-38792970)
chr2 (149-228)||(39415712-39415791)
chr2 (2-45)||(39416147-39416190)
chr2 (11-73)||(39222765-39222827)
chr2 (105-154)||(39161624-39161673)
chr2 (105-154)||(39207521-39207570)
chr2 (105-154)||(39389400-39389449)
chr2 (36-73)||(39390708-39390745)
chr2 (179-224)||(44895653-44895698)
chr2 (1-45)||(39152148-39152192)
chr2 (13-73)||(39215514-39215574)
chr2 (110-154)||(39389799-39389843)
chr2 (37-73)||(39390792-39390828)
chr2 (105-153)||(39398533-39398581)
chr2 (114-154)||(39415108-39415148)
[»] chr5 (4 HSPs)
chr5 (1-146)||(17059091-17059224)
chr5 (176-278)||(17059296-17059398)
chr5 (105-154)||(33560745-33560794)
chr5 (38-74)||(33560228-33560264)
[»] chr7 (1 HSPs)
chr7 (53-159)||(19806902-19807008)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 39458459 - 39458800
Alignment:
Q  1 ggataacatttcaaaacagaagcattttgaaagacaagtgaaggattttgaatcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458459 ggataacatttcaaaacagaagcattttgaaagacaagtgaaggattttgaatcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgat 39458558  T
Q  101 ttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458559 ttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaaga 39458658  T
Q  201 agagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagtcaaggaacttgagtctaaagatcagcaacttgttggtag 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| |||  |    
T  39458659 agagttttgaaagccaagtggaggagttcgtatcacaacagaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatggccg 39458758  T
Q  301 cgcggaagatcatgaatccaaaaagagagaattcgaaggcca 342  Q
     | |||||  |||||||| |||||||||||||||||||||||    
T  39458759 aggggaagtacatgaatcaaaaaagagagaattcgaaggcca 39458800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 125 - 282
Target Start/End: Complemental strand, 39390626 - 39390469
Alignment:
Q  125 gaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggagg 224  Q
    ||||||||| ||||||||| ||| |||||| ||||||| |||||||  ||  ||||||| ||||||||| ||| ||||  ||||||||||||||||||||    
T  39390626 gaaagccgagtgaaggagcatgaatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagcattttgaaagccaagtggagg 39390527  T
Q  225 agttcgaatcacaacagaggcaattgaaaggacaagtcaaggaacttgagtctaaaga 282  Q
    || || || || || |||||||||||||||||||||| ||||||||||||||||||||    
T  39390526 agctcaaaacagaagagaggcaattgaaaggacaagttaaggaacttgagtctaaaga 39390469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 39603204 - 39603343
Alignment:
Q  136 gaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatca 235  Q
    |||||||| ||| |||||| ||||||| ||||||   || | |||||||||||||||| ||||||||  |||||||||||||||||||||||||  ||||    
T  39603204 gaaggagcatgaatcaaaagagagagaatttgaaattcaagcgaaggagctggaatctaaaaagaagcattttgaaagccaagtggaggagttcacatca 39603303  T
Q  236 caacagaggcaattgaaaggacaagtcaaggaacttgagt 275  Q
     ||| | ||||||||||||||||||| |||||||||||||    
T  39603304 aaactgtggcaattgaaaggacaagttaaggaacttgagt 39603343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 39458775 - 39458908
Alignment:
Q  149 tcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaat 248  Q
    |||||||||||||| || ||||  || ||||||||||| |||||| |||||||  |||||||||| |||||||||||| || ||||| || |||| ||||    
T  39458775 tcaaaaaagagagaattcgaaggccatgtgaaggagctcgaatctaaaaagaattgttttgaaagtcaagtggaggagctcaaatcaaaagagagacaat 39458874  T
Q  249 tgaaaggacaagtcaaggaacttgagtctaaaga 282  Q
    ||||||||||||| ||||||||||||| ||||||    
T  39458875 tgaaaggacaagttaaggaacttgagtgtaaaga 39458908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 39474089 - 39473988
Alignment:
Q  53 tcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaa 152  Q
    |||||| ||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| || ||||| ||||||    
T  39474089 tcaaaacagaaggaatttgaaagccaagtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaagccgcatggagaagcttaagtcaa 39473990  T
Q  153 aa 154  Q
    ||    
T  39473989 aa 39473988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 278
Target Start/End: Complemental strand, 39390416 - 39390263
Alignment:
Q  125 gaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggagg 224  Q
    ||||||||| ||||||||| ||  |||||| ||||||| |||||||  ||  ||||||| ||||||||| ||| ||||  ||||||||||||||||||||    
T  39390416 gaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagcattttgaaagccaagtggagg 39390317  T
Q  225 agttcgaatcacaacagaggcaattgaaaggacaagtcaaggaacttgagtcta 278  Q
    || || || || ||  || ||||||||||||| |||| ||||||||||||||||    
T  39390316 agctcaaaacaaaagtgaagcaattgaaaggagaagttaaggaacttgagtcta 39390263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 39136541 - 39136647
Alignment:
Q  53 tcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaa 152  Q
    |||||| | |||||||| |||| ||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||  || |||||||||||||| |    
T  39136541 tcaaaacaaaaggaattggaaagccaagtgaaggagctggtgaatgatttggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcga 39136640  T
Q  153 aaaagag 159  Q
    || ||||    
T  39136641 aagagag 39136647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 39222394 - 39222499
Alignment:
Q  177 tgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagtcaaggaacttgagtc 276  Q
    ||||||| ||||||||  ||||||||  ||||||||  ||||||||||||||| ||||| || ||||||||||||||||||| || |||||| |||||||    
T  39222394 tgaaggaactggaatccaaaaagaagcattttgaaaatcaagtggaggagttcaaatcaaaagagaggcaattgaaaggacaggttaaggaaattgagtc 39222493  T
Q  277 taaaga 282  Q
    ||||||    
T  39222494 taaaga 39222499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 39415255 - 39415111
Alignment:
Q  91 agtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaa 190  Q
    ||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||| |||   |   |||||  |  |||||||||||||||    
T  39415255 agtgaatgatttggtatcaaaactgaatcattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagctggaa 39415156  T
Q  191 tctgaaaagaagagttttgaaagccaagtggaggagttcgaatca 235  Q
    || |||||||||  ||| ||||||||| || ||||| | ||||||    
T  39415155 tcagaaaagaagcatttcgaaagccaactgaaggagcttgaatca 39415111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 135 - 282
Target Start/End: Original strand, 39602993 - 39603140
Alignment:
Q  135 tgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatc 234  Q
    ||||||||| ||| |||||| | ||||| |||||||  || |||| ||||||||||||| ||||||||  |||||||||||| ||||||||| ||  |||    
T  39602993 tgaaggagcatgaatcaaaagaaagagagtttgaaggccaagtgacggagctggaatctaaaaagaagcattttgaaagccatgtggaggagctcacatc 39603092  T
Q  235 acaacagaggcaattgaaaggacaagtcaaggaacttgagtctaaaga 282  Q
    | | | | |||||||||||||||| || ||||||||||| || |||||    
T  39603093 aaatctgtggcaattgaaaggacaggttaaggaacttgaatccaaaga 39603140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 39152158 - 39152255
Alignment:
Q  53 tcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtc 150  Q
    |||||| ||||||||||||||| ||| |  |||||||| |||||||||||| |||| |||||||||||||| |||||||| || ||||| ||||||||    
T  39152158 tcaaaacagaaggaatttgaaagccaagtaaaggagctggtgaatgatttggtatccaaacagaagcattttgaaagccggattaaggaacttgagtc 39152255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 39416181 - 39416084
Alignment:
Q  53 tcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtc 150  Q
    |||||| ||||||||||||||| ||| | ||||||||||| |||||||||| ||||| |||| | ||||| | ||||||| |||||||||||||||||    
T  39416181 tcaaaacagaaggaatttgaaagccaagtgaaggagctagggaatgatttggtatcagaacacatgcattacaaaagccgcatgaaggagcttgagtc 39416084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 39473951 - 39473823
Alignment:
Q  149 tcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaat 248  Q
    |||||| ||||||| ||||||   |||||||||| ||| |||||| ||||||||| ||| ||||  |||||||||||  || ||||| || | || ||||    
T  39473951 tcaaaacagagagaatttgaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagacaat 39473852  T
Q  249 tgaaaggacaagtcaaggaacttgagtct 277  Q
    ||||||||||||| |||||||||||||||    
T  39473851 tgaaaggacaagttaaggaacttgagtct 39473823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 39390695 - 39390639
Alignment:
Q  98 gatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 154  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  39390695 gatttgctatcaaaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaa 39390639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 39422260 - 39422204
Alignment:
Q  94 gaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtc 150  Q
    |||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||    
T  39422260 gaatgatttggtatcaaaacagaagcaatttgaaagccgaatgaaggaccttgagtc 39422204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 39451757 - 39451865
Alignment:
Q  139 ggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaa 238  Q
    ||||| ||| ||||||  |||||| |||||||   | |||||||| ||||||||| ||||||||  |||||||||||||||||||||| || ||||| ||    
T  39451757 ggagcatgaatcaaaagtgagagaatttgaaggcaaagtgaaggatctggaatctaaaaagaagcattttgaaagccaagtggaggagctcaaatcaaaa 39451856  T
Q  239 cagaggcaa 247  Q
     ||||||||    
T  39451857 gagaggcaa 39451865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 39193067 - 39192970
Alignment:
Q  105 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaag 202  Q
    ||||||||||| |||||||||||| ||| |||||||| ||||| | |||| ||| | | |||||||| | |||||||||| |||||| | ||||||||    
T  39193067 tatcaaaacaggagcatttcgaaaaccggatgaaggatcttgaattaaaagagaaaaaatttgaagatcgggtgaaggagttggaatttcaaaagaag 39192970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 39198747 - 39198650
Alignment:
Q  105 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaag 202  Q
    ||||||||||| |||||||||||| ||| |||||||| ||||| | |||| ||| | | |||||||| | |||||||||| |||||| | ||||||||    
T  39198747 tatcaaaacaggagcatttcgaaaaccggatgaaggatcttgaattaaaagagaaaaaatttgaagatcgggtgaaggagttggaatttcaaaagaag 39198650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 39221870 - 39221983
Alignment:
Q  115 gaagcatttcgaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagc 214  Q
    ||||||||||||||||| |||||||||| ||||||| ||| |||   |  ||||    || |||||||||||||||||| ||||||||   |||||||||    
T  39221870 gaagcatttcgaaagccaaatgaaggagtttgagtctaaagagaagcaacttgatagccaagtgaaggagctggaatctaaaaagaagctgtttgaaagc 39221969  T
Q  215 caagtggaggagtt 228  Q
    |||||| |||||||    
T  39221970 caagtgaaggagtt 39221983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 39222080 - 39222193
Alignment:
Q  115 gaagcatttcgaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagc 214  Q
    ||||||||||||||||| |||||||||| ||||||| ||| |||   |  ||||    || |||||||||||||||||| ||||||||   |||||||||    
T  39222080 gaagcatttcgaaagccaaatgaaggagtttgagtctaaagagaagcaacttgatagccaagtgaaggagctggaatctaaaaagaagctgtttgaaagc 39222179  T
Q  215 caagtggaggagtt 228  Q
    |||||| |||||||    
T  39222180 caagtgaaggagtt 39222193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 39390686 - 39390633
Alignment:
Q  11 tcaaaacagaagcattttgaaagacaagtgaaggattttgaatcaaaagagaag 64  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||    
T  39390686 tcaaaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaagagaag 39390633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 39222556 - 39222655
Alignment:
Q  129 gccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagtt 228  Q
    ||||||||||||||| ||| |||||| ||||||| ||||||   || |||||||||||| ||||| ||||||||    |||||||||||||  |||||||    
T  39222556 gccgaatgaaggagcatgaatcaaaagagagagaatttgaaattcaagtgaaggagctgcaatctaaaaagaagcaggttgaaagccaagttaaggagtt 39222655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 39192659 - 39192545
Alignment:
Q  135 tgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatc 234  Q
    ||||||||| ||| |||||| ||||||| || ||||  || |||||||| || ||||||  |||||||  |||| |||| ||||||||||||||| ||||    
T  39192659 tgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtgaaggaacttgaatctagaaagaagcattttaaaagtcaagtggaggagttcaaatc 39192560  T
Q  235 acaacagaggcaatt 249  Q
    | || ||| ||||||    
T  39192559 aaaagagaagcaatt 39192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 39198339 - 39198225
Alignment:
Q  135 tgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatc 234  Q
    ||||||||| ||| |||||| ||||||| || ||||  || |||||||| || ||||||  |||||||  |||| |||| ||||||||||||||| ||||    
T  39198339 tgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtgaaggaacttgaatctagaaagaagcattttaaaagtcaagtggaggagttcaaatc 39198240  T
Q  235 acaacagaggcaatt 249  Q
    | || ||| ||||||    
T  39198239 aaaagagaagcaatt 39198225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 39390015 - 39389937
Alignment:
Q  106 atcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggag 184  Q
    ||||||||||||| |||| |||| |||||||| ||||||||| |||||| ||||| | |||||||  || |||||||||    
T  39390015 atcaaaacagaaggattttgaaaaccgaatgagggagcttgattcaaaagagagaaagtttgaaggccaagtgaaggag 39389937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 38792654 - 38792719
Alignment:
Q  85 ggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtc 150  Q
    |||||| |||||||||||  |||  |||||||||| |||||||| |||||||||||| ||||||||    
T  38792654 ggagctggtgaatgattttgtattgaaacagaagcttttcgaaaaccgaatgaaggaccttgagtc 38792719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 39390206 - 39390129
Alignment:
Q  125 gaaagccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaag 202  Q
    ||||||||| ||||||||| ||| || ||| |||||||||||||||  ||  ||||||| ||||||||| ||||||||    
T  39390206 gaaagccgagtgaaggagcatgaatccaaagagagagattttgaaggccaaatgaaggaactggaatctaaaaagaag 39390129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 39488003 - 39487902
Alignment:
Q  53 tcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaa 152  Q
    |||||| ||||| ||||||||| ||||  ||||||||| |||||||||||| |||  | ||| || ||||| |||| ||||| ||| ||| |||||||||    
T  39488003 tcaaaacagaagaaatttgaaagccagatgaaggagctggtgaatgatttgttattcagacataaccattttgaaaaccgaacgaatgagattgagtcaa 39487904  T
Q  153 aa 154  Q
    ||    
T  39487903 aa 39487902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 39415624 - 39415576
Alignment:
Q  106 atcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 154  Q
    ||||||||||||||||||| ||||  ||||||||||||||||| |||||    
T  39415624 atcaaaacagaagcatttcaaaaggagaatgaaggagcttgaggcaaaa 39415576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 39467650 - 39467698
Alignment:
Q  105 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaa 153  Q
    ||||||||||||||||||| ||||||||| |||||||| | ||||||||    
T  39467650 tatcaaaacagaagcattttgaaagccgattgaaggagttagagtcaaa 39467698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39474099 - 39474055
Alignment:
Q  1 ggataacatttcaaaacagaagcattttgaaagacaagtgaagga 45  Q
    |||||||||||||||||||||| | |||||||| |||||||||||    
T  39474099 ggataacatttcaaaacagaaggaatttgaaagccaagtgaagga 39474055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 38792931 - 38792970
Alignment:
Q  110 aaacagaagcatttcgaaagccgaatgaaggagcttgagt 149  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  38792931 aaacagaagcatttcgaaagccaaatgaaggaacttgagt 38792970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 39415791 - 39415712
Alignment:
Q  149 tcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagtt 228  Q
    |||||| ||||||| |||||||  ||||||||||||||| ||||| ||||||||   ||||||| ||||||  |||||||    
T  39415791 tcaaaagagagagaatttgaaggccaggtgaaggagctgaaatctaaaaagaagctgtttgaaatccaagtcaaggagtt 39415712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 39416190 - 39416147
Alignment:
Q  2 gataacatttcaaaacagaagcattttgaaagacaagtgaagga 45  Q
    ||||||||||||||||||||| | |||||||| |||||||||||    
T  39416190 gataacatttcaaaacagaaggaatttgaaagccaagtgaagga 39416147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 39222765 - 39222827
Alignment:
Q  11 tcaaaacagaagcattttgaaagacaagtgaaggattttgaatcaaaagagaaggaatttgaa 73  Q
    |||||| |||||||||| ||||| |||||  |||| ||| |||||||||||||| ||||||||    
T  39222765 tcaaaaaagaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaatttgaa 39222827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 39161624 - 39161673
Alignment:
Q  105 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 154  Q
    |||||||| |||||||| |||||| || |||| |||||||||||||||||    
T  39161624 tatcaaaagagaagcatgtcgaaaaccaaatgtaggagcttgagtcaaaa 39161673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 39207570 - 39207521
Alignment:
Q  105 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 154  Q
    |||||||| |||||||| |||||| || |||| |||||||||||||||||    
T  39207570 tatcaaaagagaagcatgtcgaaaaccaaatgtaggagcttgagtcaaaa 39207521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 39389449 - 39389400
Alignment:
Q  105 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 154  Q
    ||||||| ||||||| | |||||| || ||||||||||||||||||||||    
T  39389449 tatcaaatcagaagcgtatcgaaaaccaaatgaaggagcttgagtcaaaa 39389400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 39390745 - 39390708
Alignment:
Q  36 aagtgaaggattttgaatcaaaagagaaggaatttgaa 73  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  39390745 aagtaaaggagtttgaatcaaaagagaaggaatttgaa 39390708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 44895698 - 44895653
Alignment:
Q  179 aaggagctggaatctgaaaagaagagttttgaaagccaagtggagg 224  Q
    |||||||| ||||| ||||||||| |||||||||||||||| ||||    
T  44895698 aaggagctcgaatcagaaaagaagcgttttgaaagccaagttgagg 44895653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39152148 - 39152192
Alignment:
Q  1 ggataacatttcaaaacagaagcattttgaaagacaagtgaagga 45  Q
    |||||||||||||||||||||| | |||||||| ||||| |||||    
T  39152148 ggataacatttcaaaacagaaggaatttgaaagccaagtaaagga 39152192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 39215514 - 39215574
Alignment:
Q  13 aaaacagaagcattttgaaagacaagtgaaggattttgaatcaaaagagaaggaatttgaa 73  Q
    |||| ||||||| ||||||||||||||  ||   |||||||||||||||||| ||||||||    
T  39215514 aaaaaagaagcaatttgaaagacaagttgagagctttgaatcaaaagagaagcaatttgaa 39215574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 39389843 - 39389799
Alignment:
Q  110 aaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 154  Q
    |||||||||||||   |||||| ||||||||||||||||||||||    
T  39389843 aaacagaagcattataaaagccaaatgaaggagcttgagtcaaaa 39389799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 39390828 - 39390792
Alignment:
Q  37 agtgaaggattttgaatcaaaagagaaggaatttgaa 73  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  39390828 agtgaaggaatttgaatcaaaaaagaaggaatttgaa 39390792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 39398581 - 39398533
Alignment:
Q  105 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaa 153  Q
    ||||||||||||||||||| |||| |||| |||||||| | ||||||||    
T  39398581 tatcaaaacagaagcattttgaaatccgattgaaggagttagagtcaaa 39398533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 39415148 - 39415108
Alignment:
Q  114 agaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 154  Q
    |||||||||||||||||| | ||||||||||||| ||||||    
T  39415148 agaagcatttcgaaagccaactgaaggagcttgaatcaaaa 39415108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17059091 - 17059224
Alignment:
Q  1 ggataacatttcaaaacagaagcattttgaaagacaagtgaaggattttgaatcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgat 100  Q
    |||||||||||||||||||||||||||||||||  || ||||| | ||||||||| ||||||||||||||||||||||            |||||| |||    
T  17059091 ggataacatttcaaaacagaagcattttgaaagcaaattgaagaagtttgaatcacaagagaaggaatttgaaatcca------------agtgaaggat 17059178  T
Q  101 ttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttg 146  Q
    ||| ||||||  || |||||||||||||||||||||||||||||||    
T  17059179 ttggtatcaattcataagcatttcgaaagccgaatgaaggagcttg 17059224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 17059296 - 17059398
Alignment:
Q  176 gtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagtcaaggaacttgagt 275  Q
    |||||||||||||||||| |||| |||  |||||| | ||||||||||||| || ||||| || ||||||||||| ||||| ||||  |||| |||||||    
T  17059296 gtgaaggagctggaatctaaaaaaaaggattttgatatccaagtggaggagctcaaatcaaaagagaggcaattggaaggagaagttcaggatcttgagt 17059395  T
Q  276 cta 278  Q
    |||    
T  17059396 cta 17059398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 33560745 - 33560794
Alignment:
Q  105 tatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 154  Q
    ||||||||||||||||| |||||| || |||||||||||| |||||||||    
T  33560745 tatcaaaacagaagcatgtcgaaaaccaaatgaaggagctcgagtcaaaa 33560794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 33560228 - 33560264
Alignment:
Q  38 gtgaaggattttgaatcaaaagagaaggaatttgaaa 74  Q
    |||||||| |||||||||||||||||||| |||||||    
T  33560228 gtgaaggagtttgaatcaaaagagaaggattttgaaa 33560264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 19806902 - 19807008
Alignment:
Q  53 tcaaaagagaaggaatttgaaatccaggcgaaggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaa 152  Q
    |||||| | |||||||| |||| ||| | |||||||||  ||||||||||| |||||||||||||||||||||||||||  || |||||||||||||| |    
T  19806902 tcaaaacaaaaggaattggaaagccacgtgaaggagctgatgaatgatttggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcga 19807001  T
Q  153 aaaagag 159  Q
    || ||||    
T  19807002 aagagag 19807008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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