View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4373_high_7 (Length: 317)

Name: NF4373_high_7
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4373_high_7
NF4373_high_7
[»] chr6 (4 HSPs)
chr6 (66-277)||(748419-748630)
chr6 (1-75)||(749501-749575)
chr6 (14-84)||(28009151-28009221)
chr6 (14-84)||(17249469-17249539)
[»] chr1 (9 HSPs)
chr1 (5-84)||(31737486-31737565)
chr1 (5-81)||(28493498-28493574)
chr1 (5-70)||(22346759-22346824)
chr1 (5-81)||(19035343-19035419)
chr1 (5-84)||(1114032-1114111)
chr1 (5-75)||(868574-868644)
chr1 (14-63)||(25376016-25376065)
chr1 (14-83)||(18802928-18802996)
chr1 (11-75)||(4611059-4611123)
[»] chr7 (5 HSPs)
chr7 (5-81)||(21327005-21327081)
chr7 (11-81)||(982819-982889)
chr7 (13-84)||(45614006-45614077)
chr7 (14-84)||(5825146-5825216)
chr7 (14-84)||(45003061-45003131)
[»] scaffold0148 (1 HSPs)
scaffold0148 (5-84)||(33114-33193)
[»] chr8 (8 HSPs)
chr8 (5-84)||(18804477-18804556)
chr8 (5-81)||(18596766-18596842)
chr8 (5-84)||(500106-500185)
chr8 (5-81)||(22589503-22589579)
chr8 (5-44)||(1187396-1187435)
chr8 (33-84)||(39434559-39434610)
chr8 (14-84)||(38815167-38815237)
chr8 (7-47)||(25022015-25022055)
[»] chr4 (6 HSPs)
chr4 (14-84)||(12053340-12053410)
chr4 (5-75)||(30940905-30940975)
chr4 (5-75)||(40392727-40392797)
chr4 (16-84)||(50464460-50464528)
chr4 (14-84)||(55933624-55933694)
chr4 (5-70)||(600870-600935)
[»] scaffold0406 (1 HSPs)
scaffold0406 (5-84)||(6752-6831)
[»] chr2 (8 HSPs)
chr2 (5-84)||(13413215-13413294)
chr2 (14-84)||(27494184-27494254)
chr2 (13-70)||(20143123-20143180)
chr2 (5-84)||(3208408-3208487)
chr2 (5-84)||(17344502-17344581)
chr2 (5-75)||(4413239-4413309)
chr2 (5-81)||(15515314-15515390)
chr2 (14-82)||(30602362-30602430)
[»] chr3 (9 HSPs)
chr3 (14-84)||(39583393-39583463)
chr3 (5-81)||(32546659-32546735)
chr3 (5-75)||(44198631-44198701)
chr3 (14-84)||(26772631-26772701)
chr3 (16-75)||(3643028-3643087)
chr3 (5-84)||(21552528-21552607)
chr3 (5-70)||(44697-44762)
chr3 (11-84)||(13582380-13582453)
chr3 (14-75)||(25324903-25324963)
[»] scaffold0009 (1 HSPs)
scaffold0009 (5-84)||(102970-103049)
[»] scaffold0309 (1 HSPs)
scaffold0309 (5-81)||(5188-5264)
[»] chr5 (4 HSPs)
chr5 (16-84)||(23092694-23092762)
chr5 (14-84)||(430475-430545)
chr5 (14-84)||(35310321-35310391)
chr5 (11-84)||(15292189-15292262)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 66 - 277
Target Start/End: Complemental strand, 748630 - 748419
Alignment:
Q  66 caaaatcaatactcgtaaaatagcaaattgttttgtgtttgttttctagaacaaaaatcagnnnnnnnaaaatgaaaaatcacataaaataaataatttt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  748630 caaaatcaatactcgtaaaatagcaaattgttttgtgtttgttttctagaacaaaaatcagtttttttaaaatgaaaaatcacataaaataaataatttt 748531  T
Q  166 tcgataagctactaatattagcttctaatttttctttcttacnnnnnnnnnnnnggaaaatattcaaccaacgaaagaaaacttctaaaagagatttttg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  748530 tcgataagctactaatattagcttctaatttttctttcttacttttttttttttggaaaatattcaaccaacgaaagaaaacttctaaaagagatttttg 748431  T
Q  266 ttttaaaaatga 277  Q
    ||||||||||||    
T  748430 ttttaaaaatga 748419  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 749575 - 749501
Alignment:
Q  1 agagattttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaat 75  Q
    ||||||||||||||||||||||||||| | |||||||||||| |||||||| | |||||||||||||||||||||    
T  749575 agagattttcacttgaatagaaggcaagcggacaacaagctgtgtcgtcagacgtttttggatggcaaaatcaat 749501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 28009221 - 28009151
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||||||| || |||||    
T  28009221 tgaatagaaggcaaacggacaataagctgcgtcgttaggcctttttggattgcaaaatcaattctggtaaa 28009151  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 17249539 - 17249469
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||| |||||| | | |||||||||||| ||  || |||||||||||||||||| |||| ||||||||    
T  17249539 tgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaa 17249469  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 31737565 - 31737486
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||||    
T  31737565 atttacacttgaatagaaggcaaacagacaacaagctgcgccgccaagcctttttggatggcaaaatcaatcctcgtaaa 31737486  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 28493574 - 28493498
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    |||| |||||||||||||| ||||| |||||||| ||||| ||  || ||||||||||||||||||||||| |||||    
T  28493574 atttacacttgaatagaagacaaacggacaacaaactgcgccgctagacctttttggatggcaaaatcaatcctcgt 28493498  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 22346759 - 22346824
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaa 70  Q
    |||| |||||||||||||||||| | |||||||||||||| ||  || ||||||||||||||||||    
T  22346759 atttacacttgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaa 22346824  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 19035343 - 19035419
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    |||| |||||||||||||||||| | |||||||||||||| ||  || |||||||||||| ||||| |||| |||||    
T  19035343 atttacacttgaatagaaggcaatcggacaacaagctgcgccgctagacctttttggatgacaaaaccaatcctcgt 19035419  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 1114111 - 1114032
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||| ||| | | |||||||||| | ||| || |||||||||||||||||| |||| ||||||||    
T  1114111 atttacacttgaatagaagccaagcgggcaacaagctgtgccgttagacctttttggatggcaaaaccaatcctcgtaaa 1114032  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 868644 - 868574
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaat 75  Q
    |||| |||||||||||||||||| | | |||||||||||| ||  || |||||||||||||||||| ||||    
T  868644 atttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaat 868574  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 25376065 - 25376016
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggat 63  Q
    ||||||||||||||||| |||||||| | |||||| ||||||||||||||    
T  25376065 tgaatagaaggcaaacaaacaacaagttacgtcgttaggcctttttggat 25376016  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 18802928 - 18802996
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaa 83  Q
    |||||||||| ||||||||||| |||||| |||| |  | |||||||||| ||||||||||| |||||||    
T  18802928 tgaatagaagacaaacagacaataagctgtgtcg-ctagactttttggattgcaaaatcaattctcgtaa 18802996  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 4611059 - 4611123
Alignment:
Q  11 acttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaat 75  Q
    ||||||||| ||||||| | |||||||||||| |  || || |||||||||||| ||||||||||    
T  4611059 acttgaataaaaggcaagcggacaacaagctgtgctgttagacctttttggatgacaaaatcaat 4611123  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 21327081 - 21327005
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    |||| |||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||| |||||    
T  21327081 atttacacttgaatagaaggcaagcagacaacaagctgcgccgttagacctttttggatggcaaaatcaatcctcgt 21327005  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 982819 - 982889
Alignment:
Q  11 acttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    ||||||||||||||||||||| |||||||||| ||||  || |||||||||||||||| | |||| |||||    
T  982819 acttgaatagaaggcaaacaggcaacaagctgtgtcgctagacctttttggatggcaataccaatcctcgt 982889  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 45614077 - 45614006
Alignment:
Q  13 ttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||||||||||| | |||||||||||||| ||  || |||||| ||||||||||| |||| ||||||||    
T  45614077 ttgaatagaaggcaagcggacaacaagctgcgccgctagaccttttcggatggcaaaaccaatcctcgtaaa 45614006  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 5825146 - 5825216
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||| |||||| |||  ||||||||||| ||| || ||||||| |||||||||| |||| ||||||||    
T  5825146 tgaataggaggcaagcaggtaacaagctgcgccgtaagacctttttcgatggcaaaaccaatcctcgtaaa 5825216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 45003131 - 45003061
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||| |||||| | ||||| |||||||| ||  || |||||||||||||||||||||||  |||||||    
T  45003131 tgaataggaggcaagcggacaataagctgcgccgctagacctttttggatggcaaaatcaatcttcgtaaa 45003061  T

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Target: scaffold0148 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 33114 - 33193
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||||||| ||| |||||||||||  || || ||||||||||||| |||||||||| ||||||||    
T  33114 atttacacttgaatagaaggcaagcaggcaacaagctgcaccgccaagcctttttggatgacaaaatcaatcctcgtaaa 33193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 18804477 - 18804556
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||||||| ||| |||||||||||| ||  || |||||||||||||||||| |||| ||||||||    
T  18804477 atttacacttgaatagaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaa 18804556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 18596842 - 18596766
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    |||| |||||||||||||||||| | |||||||||||||| ||  || |||||| ||||||||||| |||| |||||    
T  18596842 atttacacttgaatagaaggcaagctgacaacaagctgcgccgctagaccttttcggatggcaaaaccaatcctcgt 18596766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 500106 - 500185
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||||||| | | ||| |||||| | ||||| ||||||||| |||| ||||||||| ||||||||    
T  500106 atttacacttgaatagaaggcaagcgggcaataagctgtgccgtcaagcctttttgaatggtaaaatcaatcctcgtaaa 500185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 22589579 - 22589503
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    |||| |||||||||| ||||||| | | |||||||||||| ||  || |||||||||||||||||| |||| |||||    
T  22589579 atttacacttgaataaaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgt 22589503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 1187435 - 1187396
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcg 44  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  1187435 atttacacttgaatagaaggcaagcagacaacaagctgcg 1187396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 39434559 - 39434610
Alignment:
Q  33 caacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||||||||||| ||  || ||||||||||||||||||||||| ||||||||    
T  39434559 caacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaa 39434610  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 38815167 - 38815237
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||||||||||||| | | |||||||||||| ||  | |||||||||||||| |||| |||| ||||||||    
T  38815167 tgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaa 38815237  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 25022055 - 25022015
Alignment:
Q  7 tttcacttgaatagaaggcaaacagacaacaagctgcgtcg 47  Q
    |||||| ||||||||||||||||| |||||||||| |||||    
T  25022055 tttcacatgaatagaaggcaaacaaacaacaagctacgtcg 25022015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 12053340 - 12053410
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||||||||||||| |||||||||||||||||||   ||||||||| |||||||||| |||| ||||||||    
T  12053340 tgaatagaaggcaagcagacaacaagctgcgtcgctcggcctttttcgatggcaaaaccaattctcgtaaa 12053410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 30940975 - 30940905
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaat 75  Q
    |||| |||||||||||||||||| | | |||||||||||||||  || |||||||||||||||||||||||    
T  30940975 atttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaat 30940905  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 40392797 - 40392727
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaat 75  Q
    |||| |||||||||||||||||| | |||||||||||||| ||  || |||||||||||||||||| ||||    
T  40392797 atttacacttgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaaccaat 40392727  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 50464528 - 50464460
Alignment:
Q  16 aatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||||||||||| | |||||||||||||| ||  ||| |||||||||||||||||| ||| ||||||||    
T  50464528 aatagaaggcaagcggacaacaagctgcgccgctaggtctttttggatggcaaaataaatcctcgtaaa 50464460  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 55933694 - 55933624
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||| |||||| | |||||||| ||||||||  || | |||||||||||||||||||||  |||||||    
T  55933694 tgaataggaggcaagcggacaacaaactgcgtcgctagacttttttggatggcaaaatcaatcatcgtaaa 55933624  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 600935 - 600870
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaa 70  Q
    |||| |||||||||||||||||| | ||||||||||| |||||  |  | ||||||||||||||||    
T  600935 atttacacttgaatagaaggcaagcggacaacaagctacgtcgctatacatttttggatggcaaaa 600870  T

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Target: scaffold0406 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 6752 - 6831
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||||||| | | |||||||||||| ||  || |||||||||||||||||| |||| ||||||||    
T  6752 atttacacttgaatagaaggcaagcgggcaacaagctgcggcgctagacctttttggatggcaaaaccaattctcgtaaa 6831  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 13413215 - 13413294
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||| ||| | |||||||||||| | ||| ||||||||||||||||||||| |||| ||| ||||    
T  13413215 atttacacttgaatagaagacaagcggacaacaagctgagccgttaggcctttttggatggcaaaaccaattctcataaa 13413294  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 27494184 - 27494254
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||| |||||| ||| |||||||||||| ||| || |||||||||||||||||| ||||| |||||||    
T  27494184 tgaataggaggcaagcaggcaacaagctgcgccgttagacctttttggatggcaaaaccaatattcgtaaa 27494254  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 20143180 - 20143123
Alignment:
Q  13 ttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaa 70  Q
    ||||||||||||||||||||||||||| |||| ||  || ||||||||||||||||||    
T  20143180 ttgaatagaaggcaaacagacaacaagttgcgccgctagacctttttggatggcaaaa 20143123  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 3208487 - 3208408
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||||||| | | |||||||||||| ||  |  |||||||||||||||||| |||| ||||||||    
T  3208487 atttacacttgaatagaaggcaagcgggcaacaagctgcgccgctaaacctttttggatggcaaaaccaatcctcgtaaa 3208408  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 17344502 - 17344581
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||||||| | | |||||||||||| ||  || ||||||||||| | ||||||||| ||||||||    
T  17344502 atttacacttgaatagaaggcaagccggcaacaagctgcgccgatagacctttttggatcgaaaaatcaatcctcgtaaa 17344581  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 4413309 - 4413239
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaat 75  Q
    |||| ||||||||||||||||||   | |||||||||||| ||  || |||||||||||||||||||||||    
T  4413309 atttacacttgaatagaaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaatcaat 4413239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 15515390 - 15515314
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    |||| ||||||| |||||||||||||| |||||| ||||| ||  || | |||||||||||||||| |||| |||||    
T  15515390 atttacacttgagtagaaggcaaacaggcaacaaactgcgccgctagacttttttggatggcaaaaccaatcctcgt 15515314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 30602362 - 30602430
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgta 82  Q
    |||||||||||||  | | ||||||||||||  |  ||||||||||||||||||||| |||| ||||||    
T  30602362 tgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatcctcgta 30602430  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 39583463 - 39583393
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||||| |||| ||||||||||| |||| ||  || ||||||||||||||||||||||| ||||||||    
T  39583463 tgaatagaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaa 39583393  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 32546659 - 32546735
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    |||| |||||||||||||||||| | | |||||||||||| ||  || |||||||||||||||||| |||| |||||    
T  32546659 atttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgt 32546735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 44198631 - 44198701
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcg-tcaggcctttttggatggcaaaatcaat 75  Q
    |||| |||||||||||||||||| | |||||||||||| |||| |||  |||||||||||||||||||||||    
T  44198631 atttacacttgaatagaaggcaagcggacaacaagctgtgtcgctca-acctttttggatggcaaaatcaat 44198701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 26772631 - 26772701
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||| |||||| | | |||||||||||| ||  || ||||||||||||||||||||||| ||||||||    
T  26772631 tgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaa 26772701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 3643028 - 3643087
Alignment:
Q  16 aatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaat 75  Q
    |||||||||||| | | ||| |||||||||||| ||||||||| ||||| ||||||||||    
T  3643028 aatagaaggcaagcgggcaataagctgcgtcgttaggccttttcggatgacaaaatcaat 3643087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 21552528 - 21552607
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| ||||||||||||||| |||| | ||||||| |||| ||||| | ||||||||||| ||||| |||| || |||||    
T  21552528 atttacacttgaatagaaggtaaacgggcaacaagttgcgccgtcaagtctttttggatgtcaaaaccaattcttgtaaa 21552607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 44697 - 44762
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaa 70  Q
    |||| |||||||||||||||||| | | |||||| ||||| ||  || ||||||||||||||||||    
T  44697 atttacacttgaatagaaggcaagcgggcaacaaactgcgccgctagacctttttggatggcaaaa 44762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 13582380 - 13582453
Alignment:
Q  11 acttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||||||||||||| | | ||| || | ||||||  ||||||||||||||||| ||||||||  |||||||    
T  13582380 acttgaatagaaggcaagcgggcaataaacagcgtcgctaggcctttttggatggctaaatcaatcttcgtaaa 13582453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 25324903 - 25324963
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaat 75  Q
    |||||||||||||||||||||| ||| |||||||| | |  |||||||||||||||| ||||    
T  25324903 tgaatagaaggcaaacagacaataaggtgcgtcgtta-gtttttttggatggcaaaagcaat 25324963  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 102970 - 103049
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||| |||||||||||||||||| | | ||||||| |||| ||  || |||||||||||||||||| |||| ||||||||    
T  102970 atttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaa 103049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 5188 - 5264
Alignment:
Q  5 attttcacttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgt 81  Q
    |||| ||||||||||||| |||| | | |||||||||||| ||  || ||||||||||||||||| ||||| |||||    
T  5188 atttacacttgaatagaatgcaagcgggcaacaagctgcgccgctagacctttttggatggcaaagtcaatcctcgt 5264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 23092694 - 23092762
Alignment:
Q  16 aatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||||||||||| |||||||||| |||||| |  || |||| ||||||| |||||||||| ||||||||    
T  23092694 aatagaaggcaagcagacaacaaactgcgttgctagaccttgttggatgacaaaatcaatcctcgtaaa 23092762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 430475 - 430545
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||| |||||| ||||| |||||||||  ||  || ||||||||||||||| ||||||| ||||||||    
T  430475 tgaataggaggcaagcagacnacaagctgcaccgatagacctttttggatggcataatcaatcctcgtaaa 430545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 35310321 - 35310391
Alignment:
Q  14 tgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    ||||||| |||||| | | |||||||||||||||| |  ||| |||||||||||||| |||| ||||||||    
T  35310321 tgaataggaggcaagcgggcaacaagctgcgtcgttaaacctctttggatggcaaaaccaattctcgtaaa 35310391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 15292262 - 15292189
Alignment:
Q  11 acttgaatagaaggcaaacagacaacaagctgcgtcgtcaggcctttttggatggcaaaatcaatactcgtaaa 84  Q
    |||||||||||||||||   | |||||| ||||| || || || ||||||||||||||||||||| ||| ||||    
T  15292262 acttgaatagaaggcaagtgggcaacaaactgcgccgccaagcttttttggatggcaaaatcaatcctcataaa 15292189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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