View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4373_high_9 (Length: 212)

Name: NF4373_high_9
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4373_high_9
NF4373_high_9
[»] scaffold0038 (5 HSPs)
scaffold0038 (16-194)||(43456-43634)
scaffold0038 (55-194)||(117331-117470)
scaffold0038 (52-184)||(27986-28117)
scaffold0038 (52-194)||(35264-35404)
scaffold0038 (16-51)||(27930-27965)
[»] chr6 (14 HSPs)
chr6 (16-194)||(28243294-28243472)
chr6 (52-194)||(28297245-28297387)
chr6 (52-194)||(28514686-28514828)
chr6 (55-194)||(28326016-28326155)
chr6 (52-194)||(28185928-28186070)
chr6 (52-184)||(28227488-28227619)
chr6 (65-194)||(28181665-28181794)
chr6 (52-194)||(28235102-28235242)
chr6 (93-183)||(26623847-26623937)
chr6 (93-183)||(26729824-26729914)
chr6 (7-51)||(28185863-28185907)
chr6 (60-112)||(28150442-28150494)
chr6 (16-51)||(28227432-28227467)
chr6 (60-112)||(28098030-28098082)
[»] scaffold0019 (2 HSPs)
scaffold0019 (54-194)||(57799-57940)
scaffold0019 (16-51)||(57963-57998)
[»] chr4 (2 HSPs)
chr4 (52-183)||(5090469-5090600)
chr4 (93-151)||(18731048-18731106)


Alignment Details
Target: scaffold0038 (Bit Score: 159; Significance: 7e-85; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 43456 - 43634
Alignment:
Q  16 aatatttgaattgtatttatacaactattatcaatatgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgac 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  43456 aatatttgaattgtatttatacaactattatcaatatatgatgcatttactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgag 43555  T
Q  116 aagatagtaaaatatttatccagcaagatcaatcgtgttcctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43556 aagatagtaaaatatttatccagcaaaatcaatcgtgttcctctatatgttgctgattaccctgttggtctcgagtcta 43634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 117331 - 117470
Alignment:
Q  55 gatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgtgtt 154  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||  ||| ||| ||||||| | |||||    
T  117331 gatgcatttactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgtt 117430  T
Q  155 cctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    ||| ||||||||||  |||||||||| |||||||||||||    
T  117431 cctttatatgttgcggattaccctgtaggtctcgagtcta 117470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 27986 - 28117
Alignment:
Q  52 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||||||| || |||||||| |||||| |||| | ||||||||||| |    
T  27986 tgtgatgcatttactcaaa-ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcat 28084  T
Q  152 gttcctctatatgttgctaattaccctgttggt 184  Q
    |||||| || |||||||  ||||||||||||||    
T  28085 gttcctttacatgttgccgattaccctgttggt 28117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 35264 - 35404
Alignment:
Q  52 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    ||||||||||| ||  | |||||||||  || ||||| |||||||||||||| ||| |||| | |||||||| |||||| |||| | ||||||||||| |    
T  35264 tgtgatgcattaaccaagacttatttg--tgtgtaggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcat 35361  T
Q  152 gttcctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    |||||| ||||||||||  ||||||||||||||||| ||||||    
T  35362 gttcctttatatgttgccgattaccctgttggtctcaagtcta 35404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 27930 - 27965
Alignment:
Q  16 aatatttgaattgtatttatacaactattatcaata 51  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27930 aatatttgaattgtatttatacaactattattaata 27965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 28243294 - 28243472
Alignment:
Q  16 aatatttgaattgtatttatacaactattatcaatatgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgac 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  28243294 aatatttgaattgtatttatacaactattatcaatatatgatgcatttactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgag 28243393  T
Q  116 aagatagtaaaatatttatccagcaagatcaatcgtgttcctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28243394 aagatagtaaaatatttatccagcaaaatcaatcgtgttcctctatatgttgctgattaccctgttggtctcgagtcta 28243472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 28297387 - 28297245
Alignment:
Q  52 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||| |||||  ||||||||||||||||||||    
T  28297387 tgtgatgcatttactcaaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgt 28297288  T
Q  152 gttcctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    |||||| ||||||||||  ||||||| ||||||||| ||||||    
T  28297287 gttcctttatatgttgccgattaccccgttggtctccagtcta 28297245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 28514686 - 28514828
Alignment:
Q  52 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||| |||||  ||||||||||||||||||||    
T  28514686 tgtgatgcatttactcaaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgt 28514785  T
Q  152 gttcctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    |||||| ||||||||||  ||||||| ||||||||| ||||||    
T  28514786 gttcctttatatgttgccgattaccccgttggtctccagtcta 28514828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 28326016 - 28326155
Alignment:
Q  55 gatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgtgtt 154  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||  ||| ||| ||||||| | |||||    
T  28326016 gatgcatttactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgtt 28326115  T
Q  155 cctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    ||| ||||||||||  |||||||||| |||||||||||||    
T  28326116 cctttatatgttgcggattaccctgtaggtctcgagtcta 28326155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 28185928 - 28186070
Alignment:
Q  52 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    ||||||||| ||| |||||||||||| |||||||||| |||| |||||| ||||||||||||| |||||||| |||||| |||| | ||||||||||| |    
T  28185928 tgtgatgcacttaatcaaacttattttattgggtaggaatggctatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcat 28186027  T
Q  152 gttcctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    |||||| ||||||||||| ||| |||||||||| |||||||||    
T  28186028 gttcctttatatgttgctgatttccctgttggtatcgagtcta 28186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 28227488 - 28227619
Alignment:
Q  52 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||||||| || |||||||| |||||| |||| | ||||||||||| |    
T  28227488 tgtgatgcatttactcaaa-ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcat 28227586  T
Q  152 gttcctctatatgttgctaattaccctgttggt 184  Q
    |||||| || |||||||  ||||||||||||||    
T  28227587 gttcctttacatgttgccgattaccctgttggt 28227619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 28181665 - 28181794
Alignment:
Q  65 ctcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgtgttcctctatatg 164  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| || |||||||| |||||  | ||||  ||||||||| |||||||| ||||||    
T  28181665 ctcaaacttatttgattgggtaggaatggatatgaatatgagtttatcgaaaagatagtcaaatacgtttccaaaaagatcaattgtgttcctttatatg 28181764  T
Q  165 ttgctaattaccctgttggtctcgagtcta 194  Q
    ||||  |||||  |||||||||||||||||    
T  28181765 ttgccgattactatgttggtctcgagtcta 28181794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 28235102 - 28235242
Alignment:
Q  52 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    ||||||||||| ||  | |||||||||  || ||||| |||||||||||||| ||| |||| | |||||||| |||||| |||| | ||||||||||| |    
T  28235102 tgtgatgcattaaccaagacttatttg--tgtgtaggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcat 28235199  T
Q  152 gttcctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    |||||| ||||||||||  ||||||||||||||||| ||||||    
T  28235200 gttcctttatatgttgccgattaccctgttggtctcaagtcta 28235242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 26623847 - 26623937
Alignment:
Q  93 gatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgtgttcctctatatgttgctaattaccctgttgg 183  Q
    |||||||||| || |||||||| |||||||| |||||  | |||| ||||||||||||||| ||  || |||||||||| |||||||||||    
T  26623847 gatatgaatatgattttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgg 26623937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 26729824 - 26729914
Alignment:
Q  93 gatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgtgttcctctatatgttgctaattaccctgttgg 183  Q
    |||||||||| || |||||||| |||||||| |||||  | |||| ||||||||||||||| ||  || |||||||||| |||||||||||    
T  26729824 gatatgaatatgattttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgg 26729914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 28185863 - 28185907
Alignment:
Q  7 atgtcgaagaatatttgaattgtatttatacaactattatcaata 51  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||    
T  28185863 atgtcgaacaatatttgaattgtatttatacaactattattaata 28185907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 28150442 - 28150494
Alignment:
Q  60 atttactcaaacttatttgattgggtagggatggatatgaatacgagtttatt 112  Q
    |||||||||||||||| | |||||| ||| |||||||||||| ||||||||||    
T  28150442 atttactcaaacttatcttattgggcaggaatggatatgaattcgagtttatt 28150494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 28227432 - 28227467
Alignment:
Q  16 aatatttgaattgtatttatacaactattatcaata 51  Q
    ||||||||||||||||||||||||||||||| ||||    
T  28227432 aatatttgaattgtatttatacaactattattaata 28227467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 28098082 - 28098030
Alignment:
Q  60 atttactcaaacttatttgattgggtagggatggatatgaatacgagtttatt 112  Q
    |||||||||||||||| | |||||  ||| |||||||||||| ||||||||||    
T  28098082 atttactcaaacttatcttattggccaggaatggatatgaattcgagtttatt 28098030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 57940 - 57799
Alignment:
Q  54 tgatgcatttactcaaacttatttgatt-gggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgtg 152  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||| |||||||| |||||| |||| | ||||||||||| ||    
T  57940 tgatgcatttactcaaacttatttcatttgggtaggaatggatatgaatgcgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatg 57841  T
Q  153 ttcctctatatgttgctaattaccctgttggtctcgagtcta 194  Q
    ||||| ||||||||||  |||||||||||||| |||| ||||    
T  57840 ttcctttatatgttgccgattaccctgttggtatcgaatcta 57799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 57998 - 57963
Alignment:
Q  16 aatatttgaattgtatttatacaactattatcaata 51  Q
    ||||||||||||||||||||||||||||||| ||||    
T  57998 aatatttgaattgtatttatacaactattattaata 57963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 5090600 - 5090469
Alignment:
Q  52 tgtgatgcatttactcaaacttatttgattgggtagggatggatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    ||||||||||||| ||||| |||| ||||| | ||||  |||||||||||||||||||||| | | |||||| | |||| | |||| |||||||||||      
T  5090600 tgtgatgcatttattcaaatttatctgatttgataggactggatatgaatacgagtttattcagatgatagtcacatatgtctccaacaagatcaatcac 5090501  T
Q  152 gttcctctatatgttgctaattaccctgttgg 183  Q
      |||| || |||||||| ||||||| |||||    
T  5090500 actcctttacatgttgctgattacccggttgg 5090469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 18731106 - 18731048
Alignment:
Q  93 gatatgaatacgagtttattgacaagatagtaaaatatttatccagcaagatcaatcgt 151  Q
    ||||||||||| |||||||||| |||||||| |||||| | |||| |||||||| ||||    
T  18731106 gatatgaatacaagtttattgaaaagatagtcaaatatgtctccaacaagatcagtcgt 18731048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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