View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4373_low_2 (Length: 706)
Name: NF4373_low_2
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4373_low_2 |
 | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 19 - 704
Target Start/End: Original strand, 110710 - 111395
Alignment:
| Q |
19 |
atcctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
110710 |
atcctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagata |
110809 |
T |
|
| Q |
119 |
tgccaagagtaaaggttttagctttcgcatgggtaaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
110810 |
tgccaagagtaaaggttttagctttcgcatgggtaaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaa |
110909 |
T |
|
| Q |
219 |
ctgtgcgcaggaaattatcggagaataatagcgattttgaacaagaacacagtcgtagtgcaatggaagtttcctctcattggctacgtgggttttcttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||| |||| |||||||||| ||| |||||||| |
|
|
| T |
110910 |
ctgtgcgcaggaaattatcggagaataatagcgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttcttt |
111009 |
T |
|
| Q |
319 |
agattataggatatcctattattgttttttagcttattttaatatttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaactctaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
111010 |
agattataggatatcctattattgttttttagcttattttaatatttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaactctaa |
111109 |
T |
|
| Q |
419 |
aacacttgttctggttttcaaatttgtttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgatagtggattat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
111110 |
aacacttgttctggttttcaaatttgtttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgacagtggattat |
111209 |
T |
|
| Q |
519 |
tttgtgtctttatgtggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgaatat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
111210 |
tttgtgtctttatgtggtgatgatgcttataattccttcggtgatgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtgaatat |
111309 |
T |
|
| Q |
619 |
tattgttgccacgagaaataatgttgatatatcatcaactgggatactatttgtaaacatctatagtaaaggtgtataagcttgct |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
111310 |
tattgttgccacgagaaataatgttgatatatcatcaactgggatactatttataaacatatatcgtaaaggtgtataagcttgct |
111395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 48772255 - 48772453
Alignment:
| Q |
19 |
atcctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagata |
118 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||| ||| ||||||||||||||| | ||| |||||||||||||||||||||| |||||| ||| || |
|
|
| T |
48772255 |
atcctctcaatgatagactaccattggagctccccttagatccctttgaaggaatgaagtttacatcaattgaagatgtaaagaaatactacacaaggta |
48772354 |
T |
|
| Q |
119 |
tgccaagagtaaaggttttagctttcgcatggg---------taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
208 |
Q |
| |
|
|| | || |||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
48772355 |
cgcgaggaataaaggttttagctttcgtatgggtcgtgttactaaatcaagaacggatggtagggtaattggtcaagagattctttgtttaaaggaggg |
48772453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 19 - 668
Target Start/End: Complemental strand, 20647161 - 20646506
Alignment:
| Q |
19 |
atcctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20647161 |
atcctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagata |
20647062 |
T |
|
| Q |
119 |
tgccaagagtaaag-----gttttagctttcgcatgggtaaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgt |
213 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20647061 |
tgccaagagtatagtataggttttagctttcgcatgggtaaatcaagaacaaatggtatgataattggtcaagagattgtttgttcaaaggagggattgt |
20646962 |
T |
|
| Q |
214 |
tacaactgtgcgcaggaaattatcggagaataatagcgattttgaacaagaacacagtcgtagtgcaatggaagtttcctctcattggctacgtgggttt |
313 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| | ||||||||||||| |||| |||||||||| ||| ||| |
|
|
| T |
20646961 |
tacaactgtgcgcaggaaattatcggaaaataatagcgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggcttt |
20646862 |
T |
|
| Q |
314 |
tctttagattataggatatcctattattgttttttagcttattttaatatttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20646861 |
tctttagattataggatatcctattattgttttttagcttattttaatatttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaac |
20646762 |
T |
|
| Q |
414 |
tctaaaacacttgttctggttttcaaatttgtttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgatagtgg |
513 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20646761 |
tctaaaacgcttgttctggttttcaaatttgtttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgacagtgg |
20646662 |
T |
|
| Q |
514 |
attattttgtgtctttatgtggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtg |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20646661 |
attattttgtgtctttatgtggtgatgatgcttataattccttcggtgatgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtg |
20646562 |
T |
|
| Q |
614 |
aatattattgttgccacgagaaataatg-ttgatatatcatcaactgggatactat |
668 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20646561 |
aatattattgttgccacgagaaataatgtttgatatatcatcaactgggatactat |
20646506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 19328929 - 19329124
Alignment:
| Q |
22 |
ctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgc |
121 |
Q |
| |
|
||||||||||||||||| ||||| || |||||| || ||||||||||||||| || |||| ||||||||||||| ||||| ||||||| ||| ||||| |
|
|
| T |
19328929 |
ctctcaatgatagactaccatcatagctccccttagggccctttgaaggaattgagtttgtatcaattgaagatttaaaggattactataaaaggtatgc |
19329028 |
T |
|
| Q |
122 |
caagagtaaaggttttagctttcgcatgggt---------aaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
208 |
Q |
| |
|
|| ||||||||||| || || |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19329029 |
ggggaacaaaggttttagtttccgtatgggttgtgttactaaatcaagaacgaatggtatggtaattggtcaagagattctttgttcaaaggaggg |
19329124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 63796 - 63991
Alignment:
| Q |
22 |
ctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgc |
121 |
Q |
| |
|
||||||||||||||| | |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
63796 |
ctctcaatgatagaccaccatcagagctccccttagagccctttgaaggaatggagtttgcatcaattgaagatgtaaaggattactacgtaaggtacgc |
63895 |
T |
|
| Q |
122 |
caagagtaaaggttttagctttcgcatggg---------taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
208 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||||||| |||||||| || ||||||||||| ||| |||||||||||||||| |
|
|
| T |
63896 |
caagaaaaaaggttttagttttcgcatgggtcgggttactaaatcaagaacgaatggtattgtgattggtcaagaaattctttgttcaaaggaggg |
63991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 22638868 - 22639028
Alignment:
| Q |
56 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
151 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| | ||||||| ||| |||||||| ||| ||||| | || |||||||||||||||||| |||| |
|
|
| T |
22638868 |
agagccgtatgaaggaatggattttgcatcattcgaagatgcaaaaaattactatacaagttatgcaaggaagaaaggttttagctttcgcttgggcgta |
22638967 |
T |
|
| Q |
152 |
----taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
208 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||| |||||||||||||||| |
|
|
| T |
22638968 |
ttattaaatcaagaacaaatggattgataattggtcaggagattctttgttcaaaggaggg |
22639028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 446 - 621
Target Start/End: Original strand, 1415 - 1590
Alignment:
| Q |
446 |
ttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgatagtggattattttgtgtctttatgtggtgatgatgct |
545 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||| ||| || | ||||||||| || |||||||||| | |
|
|
| T |
1415 |
ttccatcaatggatttggtttcatgtaaatcttaattttcttttattcttcaatagttatgacagtaagttctgttgtgtcttcatacggtgatgatgat |
1514 |
T |
|
| Q |
546 |
tataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgaatattat |
621 |
Q |
| |
|
||| |||||| | || || |||||| ||||||||||||| |||||||||||||| ||| | ||||||||||||| |
|
|
| T |
1515 |
tatctttcctttgctgctgagagtgtttttgtaaaatctggaagattataaggagctgctatgtggtgaatattat |
1590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 16080152 - 16080351
Alignment:
| Q |
19 |
atcctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagata |
118 |
Q |
| |
|
|||||||||||||||||||| ||| || |||| | ||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| ||| || |
|
|
| T |
16080152 |
atcctctcaatgatagactaccattggaactcccattagagccctttgaatgaatggagtttacatcaattgaagatgtaaagaaatactacacaaggta |
16080251 |
T |
|
| Q |
119 |
tgccaagagtaaaggttttagctttcgcatggg---------taaatcaagaacaaatggtatggt-aattggtcaagagattgtttgttcaaaggaggg |
208 |
Q |
| |
|
|| | || |||||||||||||||||| ||||| |||||||||||| |||||| ||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
16080252 |
cgcgaggaataaaggttttagctttcgtatgggtcgtgttactaaatcaagaacggatggtagggtaaattggtcaagagattctttgttctaaggaggg |
16080351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 38590376 - 38590228
Alignment:
| Q |
65 |
tgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatgggt---------aaa |
155 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||| |||||||||||| ||| || || | || |||||||||||||||||| ||||| ||| |
|
|
| T |
38590376 |
tgaaggaacggattttgcatcatttgaagatgcaaagaattactatacaaggtacgcaaggaacaaaggttttagctttcgcttgggtcgtattactaaa |
38590277 |
T |
|
| Q |
156 |
tcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaagg |
204 |
Q |
| |
|
||||||||| |||| || |||||||||| |||||| |||||||||||| |
|
|
| T |
38590276 |
tcaagaacagatggattgataattggtcaggagattctttgttcaaagg |
38590228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 706
Target Start/End: Original strand, 51168625 - 51168688
Alignment:
| Q |
643 |
tgatatatcatcaactgggatactatttgtaaacatctatagtaaaggtgtataagcttgctct |
706 |
Q |
| |
|
|||||||||||||| | |||||||||||| | ||| |||||||||| |||||||| ||||||| |
|
|
| T |
51168625 |
tgatatatcatcaattatgatactatttgtgaccatttatagtaaagttgtataaggttgctct |
51168688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 44886218 - 44886051
Alignment:
| Q |
50 |
cccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatg |
149 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||| |||| ||||||| | ||||| ||||||| ||| || || ||| ||||||||||| || |||||| |
|
|
| T |
44886218 |
ccccttagagcccattgaaggaatggagtttaaatcatttgaagaggcaaagagttactacacaaggtacgctcagaacaaaggttttagtttccgcatg |
44886119 |
T |
|
| Q |
150 |
gg---------taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
208 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
44886118 |
ggccgtgttactaagtcaagaacaaacggtatgataattggtcaagaaattctttgttcaaaggaggg |
44886051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University