View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4373_low_4 (Length: 478)
Name: NF4373_low_4
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4373_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 22 - 464
Target Start/End: Complemental strand, 18817214 - 18816770
Alignment:
| Q |
22 |
ggttggtggaggttgtttgaaaagggagaaactacaagtgtttaatgtgtaacttaaactgtaaagaattgaataacaataaaccaccgatgatcaacaa |
121 |
Q |
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| T |
18817214 |
ggttggtggaggttgtttgaaaagggagaaactacaagtgtttaatgtgtaacttaaactgtaaagaattgaataacaataaaccaccgatgatcaacaa |
18817115 |
T |
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| Q |
122 |
tcaactaatcaaaactgaaaaattaggcaatacctaatgagctgtcatatcgacatggaccagcaggggtgagattatttcctgaaggagaacctgccaa |
221 |
Q |
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| T |
18817114 |
tcaactaatcaaaactgaaaaattaggcaatacctaatgagctgtcatatcgacatggaccagcaggggtgagattatttcctgaaggagaacctgccaa |
18817015 |
T |
|
| Q |
222 |
atttatataaaatggataattttttggtagccaaaatcgataattaaaggaatgatggtgtatgttagttgatagaaatctagttgtcaaccaaaatatt |
321 |
Q |
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|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18817014 |
atttatataaaaagtataactttttggtagccaaaatcgataattaaaggaatgatggtgtatgttagttgatagaaatctagttgtcaaccaaaatatt |
18816915 |
T |
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| Q |
322 |
ggctaccctta--ttctttgaatatattaggaaaatgataaatgtagaatcctacttaacaaagtttcgnnnnnnntattcaccaatatttgagccaggg |
419 |
Q |
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| T |
18816914 |
ggctacccttattttctttgaatatattaggaaaatgataaatgtagaatcctacttaacaaagtttcgaaaaaaatattcaccaatatttgagccaggg |
18816815 |
T |
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| Q |
420 |
gtttgagttccagatctgttgcattttgtcatcctagaggatttt |
464 |
Q |
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| T |
18816814 |
gtttgagttccagatctgttgcattttgtcatcctagaggatttt |
18816770 |
T |
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