View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4373_low_9 (Length: 261)
Name: NF4373_low_9
Description: NF4373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4373_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 6113732 - 6113947
Alignment:
| Q |
16 |
aaaactaaaatgtcaatacaaaattataattatctattgcaataattatacatgtcttaattaaatgtttatttttgtgtgttgtattcaaaataaatta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6113732 |
aaaactaaaatgtcaatacaaaattataattatctattgcaataattgtacatgtcttaattaaatgtttatttttgtgtgttgtattcaaattaaatta |
6113831 |
T |
|
| Q |
116 |
gaatgtttatctacgactctatgaaccaagcctagttttccttatgataaagaaatacttgtgatgtaaaatttacaaataccagtatttgttgaagaac |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6113832 |
gaatgtttatctatgactctatgaaccaagcctagtttttcttatgataaagaaatacttgtgatgtaaaatttacaaataccagtatttgttgaagaac |
6113931 |
T |
|
| Q |
216 |
tatagtaaagacgaaa |
231 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6113932 |
tatagtaaagacgaaa |
6113947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 6120623 - 6120834
Alignment:
| Q |
16 |
aaaactaaaatgtcaatacaaaattataattatctattgcaataattatacatgtcttaattaaatgtttatttttgtgtgttgtattcaaaataaatta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
6120623 |
aaaactaaaatgtcaatacaaaattataattatttattgcaataattgtacatgtcttaattaaatgtttgtttttgtgtgttgtattcaaattaaatta |
6120722 |
T |
|
| Q |
116 |
gaatgtttatctacgactctatgaaccaagcctagttttccttatgataaagaaatacttgtgatgtaaaatttacaaataccagtatttgttgaagaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
6120723 |
gaatgtttatctacgactctatgaaccaaacccaattttccttgtgataaagaaatacttgtgatgtaaaatttacatataccag----tgttaaagaac |
6120818 |
T |
|
| Q |
216 |
tatagtaaagacgaaa |
231 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6120819 |
tatagtaaagacgaaa |
6120834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 6089714 - 6089499
Alignment:
| Q |
12 |
atgaaaaactaaaatgtcaatacaaaattataattatctattgcaataattatacatgtcttaattaaatgtttatttttgtgtgttgtattcaaaataa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||| | ||||||||||| ||| |
|
|
| T |
6089714 |
atgaaaaactaaaatgtcaatacaaaattataattggctattgcaataattgtacatatcttaattatatgtttatttttgtatattgtattcaaattaa |
6089615 |
T |
|
| Q |
112 |
attagaatgtttatctacgactctatgaaccaagcctagttttccttatgataaagaaatacttgtgatgtaaaatttacaaataccagtatttgttgaa |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| || |||| || |||||||||||||||||||| | ||||||||||||||| || |
|
|
| T |
6089614 |
attagaatgtttatctatgactctatgaaccaagcccagttttccttgtgttaaaaaattacttgtgatgtaaaatttatatataccagtatttgttaaa |
6089515 |
T |
|
| Q |
212 |
gaactatagtaaagac |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6089514 |
aaactatagtaaagac |
6089499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 6080205 - 6079994
Alignment:
| Q |
16 |
aaaactaaaatgtcaatacaaaattataattatctattgcaataattatacatgtcttaattaaatgtttatttttgtgtgttgtattcaaaataaatta |
115 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
6080205 |
aaaactagaatgttaatacaaaattataattgtctattgcaataattgtacatgtcttaattaaatgtttatttttgtgagctgtattcaaattaaatta |
6080106 |
T |
|
| Q |
116 |
gaatgtttatctacgactctatgaaccaagc-ctagttttccttatgataaagaaatacttgtgatgtaaaatttacaaataccagtatttgttgaagaa |
214 |
Q |
| |
|
||| |||||||| ||||||| ||||||||| ||| |||||||| || || | ||||||||||||| ||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
6080105 |
gaaaatttatctatgactctaagaaccaagctcta-ttttccttgtgttatacaaatacttgtgatttaaaatttacatatatcagtatttgttaaagaa |
6080007 |
T |
|
| Q |
215 |
ctatagtaaagac |
227 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
6080006 |
ctatagcaaagac |
6079994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 30656627 - 30656593
Alignment:
| Q |
12 |
atgaaaaactaaaatgtcaatacaaaattataatt |
46 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30656627 |
atgaaaaactaaaatgtcactacaaaattataatt |
30656593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University