View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4374-Insertion-2 (Length: 868)
Name: NF4374-Insertion-2
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4374-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 47917811 - 47917484
Alignment:
| Q |
8 |
gcaggaacagtacaagggcaaccagacgaacaaaaatgatgaaactgtaacagaaagaaaggtaattgtcaagacagaacacacatgtggcattaaactt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47917811 |
gcaggaacagtacaagggcaaccagacgaacaaaaatgatgaaactgtaacagaaagaaaggtaattgtcaagacagaacacacatgtggcattaaactt |
47917712 |
T |
|
| Q |
108 |
tcaagtcaatgactaattgcattgttgaactttattagaattaaaagcagtacataaagcaagctgatataatatggtaaatttgatagttctattcaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47917711 |
tcaagtcaatgactaattgcattgttgaactttattagaattaaaagcagtacataaagcaagctgatataatatggtaaatttgatagttctattcaag |
47917612 |
T |
|
| Q |
208 |
acttcacaatcacaagcaagatctaataaacagatgcaaacaagatttgcttctccaaaatcagccctaaaactttaatcaaatttccattcttctattg |
307 |
Q |
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| T |
47917611 |
acttcacaatcacaagcaagatctaataaacagatgcaaacaagatttgcttctccaaaatcagctctaaaactttaatcaaatttccattcttctattg |
47917512 |
T |
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| Q |
308 |
catttaatatataatggcaaaagcaatt |
335 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
47917511 |
catttaatatataatggcaaaagcaatt |
47917484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 526 - 868
Target Start/End: Complemental strand, 47917294 - 47916958
Alignment:
| Q |
526 |
gaagcgaggcttggtaccgatatgggcttagaacagcagcaggtatcgtaatcttccttgttagtggcctctattgtcggctcatcaattcacttggctc |
625 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47917294 |
gaagcgaggcttggtaccgatatgggcttagaacagcagcaggtatcttaatcttccttgttagtggcctccattgtcggctcatcaattcacttggctc |
47917195 |
T |
|
| Q |
626 |
agaaacatgaccatcttttccatttcccaagtccccttcctttggccacattgcattaccaaaaccatatgtcccctttgtttcaaacaaccattgatta |
725 |
Q |
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| T |
47917194 |
agaaacatgaccatcttttccatttcccaaatccccttcctttggccacattgcattaccaaaaccatatgtcccctttgtttcaaacaaccatcg---a |
47917098 |
T |
|
| Q |
726 |
ttgtgatcaaagtctccagtttgacttctcatcgaggcatactttgtcgacttcgagggacactctcctctccattttagaccccccatttgattgagga |
825 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47917097 |
ttgtgatcaaagtctccagtttgacttctcatcgaggcatactttctcgacttc-aaggacactct-ctctccattttagaccccccatttgattgagga |
47917000 |
T |
|
| Q |
826 |
agtggcgctccattatccacagccactttgatcaggttctgtg |
868 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
47916999 |
agtggcgctccattatccacagccac-ttgatcaagttctgtg |
47916958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 364 - 460
Target Start/End: Complemental strand, 47917456 - 47917360
Alignment:
| Q |
364 |
aaaacttatatccatcaattacattcaagttggtcaaatatagtgaagccaaaatgatcattcataataaagaggaaatgcatgattttgatcacta |
460 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
47917456 |
aaaacttatatccatcaattacattcaagttggtcaaatatagtgaagccaaaatggtcattcataataaaggggaaatgcatgattttgatcacta |
47917360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 531 - 830
Target Start/End: Original strand, 29919985 - 29920283
Alignment:
| Q |
531 |
gaggcttggtaccgatatgggcttagaacagcagcaggtatcgtaatcttccttgttagtggcctctattgtcggctcatcaattcacttggctcagaaa |
630 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
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| T |
29919985 |
gaggcttggtaccgatatgggctgagaacagcagcaggtatcttcaacttccttgttagtggcctccatggtcggctcatcaattcagttggctcagaaa |
29920084 |
T |
|
| Q |
631 |
catgaccatcttttccatttcccaagtccccttcctttggccacattgcattaccaaaaccatatgtcccctttgtttcaaacaaccattgattattgtg |
730 |
Q |
| |
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||| ||||||||||||||||| || || |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
29920085 |
catcgccatcttttccatttccgaaatctccttcctttggccatattgcattaccataaccatatgtcccctttgtttcaaacaaccatcg---attgtg |
29920181 |
T |
|
| Q |
731 |
atcaaagtctccagtttgacttctcatcgaggcatactttgtcgacttc--gagggacactctcctctccattttagaccccccatttgattgaggaagt |
828 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| ||||||||||||||||||||||||||||| | |||||||| |
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| T |
29920182 |
atcaaagtctccagtttgacttctcatcagcgcagactttgtcgacttcatcaaggacaatctcctctccattttagaccccccatttggtggaggaagt |
29920281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 29919424 - 29919749
Alignment:
| Q |
8 |
gcaggaacagtacaagggcaaccagacgaacaaaaatgatgaaactgtaacagaaagaaaggtaattgtcaagacagaacacacatgtggcattaaactt |
107 |
Q |
| |
|
||||||||| ||||| ||||||| ||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |
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|
| T |
29919424 |
gcaggaacaacacaagagcaaccaaacggataaaaatgatgagactgtaacagaaagaaaggtaattgtca-----gaacacacatgcggcattcaactt |
29919518 |
T |
|
| Q |
108 |
tcaagtcaatgactaa-ttgcattgttgaactttattagaattaaaagcagtacataaagcaagctgatataatatggtaaatttgatagttctattcaa |
206 |
Q |
| |
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||||||||||||| || |||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||| || |
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| T |
29919519 |
tcaagtcaatgaccaaattgcattgttgaacctta---gaattacaagcagtacataaagcaagctgaaataatatggtaaatttaatagtgttattgaa |
29919615 |
T |
|
| Q |
207 |
gacttcacaatcacaagcaagatctaataaacagatgcaaacaagatttgcttctccaa---------aatcagccctaaaactttaatcaaatttccat |
297 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||| ||||||||| |
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| T |
29919616 |
gactacacaatcacatgcaagatctaataaacagatgcaaaccaga-ttgcttctccaaaatcatctgaatcagccctaaaacttccatccaatttccat |
29919714 |
T |
|
| Q |
298 |
tcttctattgcatttaatatataatggcaaaagca |
332 |
Q |
| |
|
||||||||| | || ||||||||||| |||||||| |
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|
| T |
29919715 |
tcttctattactttcaatatataatgacaaaagca |
29919749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 385 - 460
Target Start/End: Original strand, 29919828 - 29919903
Alignment:
| Q |
385 |
cattcaagttggtcaaatatagtgaagccaaaatgatcattcataataaagaggaaatgcatgattttgatcacta |
460 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||| ||| ||||||| |||| ||||||| ||||||||||| |
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|
| T |
29919828 |
cattcaaattggtcaaatatagtgaagccaaaatggtcaatcagaataaaggggaagtgcatgactttgatcacta |
29919903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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