View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4374-Insertion-4 (Length: 750)

Name: NF4374-Insertion-4
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4374-Insertion-4
NF4374-Insertion-4
[»] chr8 (26 HSPs)
chr8 (173-609)||(11880365-11880793)
chr8 (173-609)||(11897781-11898209)
chr8 (627-750)||(11880252-11880375)
chr8 (627-750)||(11897668-11897791)
chr8 (9-88)||(11880885-11880964)
chr8 (9-88)||(11898301-11898380)
chr8 (93-192)||(17469256-17469355)
chr8 (96-190)||(5700360-5700454)
chr8 (98-180)||(27056555-27056637)
chr8 (96-180)||(1063511-1063595)
chr8 (89-177)||(2183609-2183697)
chr8 (101-192)||(9642339-9642430)
chr8 (95-178)||(28345494-28345577)
chr8 (84-177)||(14155524-14155617)
chr8 (101-170)||(40248381-40248450)
chr8 (83-131)||(11880795-11880843)
chr8 (83-131)||(11898211-11898259)
chr8 (89-176)||(10297455-10297542)
chr8 (89-180)||(15068588-15068678)
chr8 (93-164)||(17084123-17084194)
chr8 (93-180)||(20399593-20399680)
chr8 (89-123)||(2189904-2189938)
chr8 (93-135)||(9476058-9476100)
chr8 (95-177)||(30481424-30481506)
chr8 (123-180)||(6388516-6388573)
chr8 (93-142)||(24927950-24927999)
[»] chr4 (25 HSPs)
chr4 (89-240)||(21544582-21544733)
chr4 (88-239)||(31782615-31782766)
chr4 (88-186)||(30266325-30266423)
chr4 (88-186)||(30285765-30285863)
chr4 (91-192)||(29527817-29527918)
chr4 (88-180)||(14605926-14606018)
chr4 (89-192)||(10574408-10574511)
chr4 (144-209)||(11173031-11173096)
chr4 (89-239)||(47103741-47103903)
chr4 (89-177)||(31415935-31416023)
chr4 (89-170)||(1866560-1866641)
chr4 (145-209)||(24637240-24637304)
chr4 (93-186)||(25298828-25298921)
chr4 (93-141)||(4741256-4741304)
chr4 (417-453)||(13773202-13773238)
chr4 (91-163)||(15733544-15733616)
chr4 (101-180)||(10302099-10302178)
chr4 (95-177)||(25941147-25941229)
chr4 (94-191)||(12825451-12825548)
chr4 (93-165)||(26564838-26564910)
chr4 (93-180)||(1724311-1724398)
chr4 (89-163)||(45065252-45065326)
chr4 (93-142)||(21423868-21423917)
chr4 (89-177)||(30672966-30673052)
chr4 (93-150)||(33516103-33516160)
[»] chr2 (15 HSPs)
chr2 (84-239)||(18485641-18485796)
chr2 (89-176)||(3547164-3547251)
chr2 (89-180)||(38342519-38342610)
chr2 (84-177)||(30978920-30979011)
chr2 (89-170)||(43371551-43371632)
chr2 (89-177)||(44057880-44057969)
chr2 (94-142)||(42798026-42798074)
chr2 (101-192)||(6027877-6027968)
chr2 (93-180)||(37999485-37999572)
chr2 (101-170)||(45256833-45256902)
chr2 (101-197)||(6164456-6164552)
chr2 (89-141)||(14331525-14331577)
chr2 (101-180)||(22900804-22900883)
chr2 (101-170)||(13705371-13705440)
chr2 (94-135)||(13830739-13830780)
[»] chr7 (22 HSPs)
chr7 (89-180)||(32546194-32546285)
chr7 (92-180)||(44845135-44845223)
chr7 (89-163)||(27063140-27063214)
chr7 (96-191)||(3920547-3920642)
chr7 (89-178)||(31426010-31426099)
chr7 (84-180)||(41103653-41103749)
chr7 (89-180)||(18683976-18684067)
chr7 (101-180)||(45380121-45380200)
chr7 (629-743)||(5725134-5725248)
chr7 (90-180)||(22973391-22973481)
chr7 (90-179)||(21750785-21750874)
chr7 (95-192)||(26622959-26623056)
chr7 (93-180)||(3157089-3157176)
chr7 (93-180)||(12980383-12980470)
chr7 (96-187)||(16811739-16811829)
chr7 (93-180)||(18825872-18825959)
chr7 (93-192)||(23475251-23475350)
chr7 (89-170)||(29014962-29015049)
chr7 (101-191)||(26004463-26004553)
chr7 (89-170)||(27063336-27063417)
chr7 (89-162)||(28309494-28309567)
chr7 (172-209)||(32546292-32546329)
[»] scaffold0184 (1 HSPs)
scaffold0184 (89-177)||(2966-3054)
[»] chr5 (14 HSPs)
chr5 (96-177)||(28569025-28569106)
chr5 (89-192)||(12712546-12712649)
chr5 (89-192)||(12773810-12773913)
chr5 (25-88)||(28569160-28569223)
chr5 (88-180)||(12250966-12251058)
chr5 (638-742)||(41313785-41313889)
chr5 (101-192)||(10822515-10822606)
chr5 (89-180)||(23044992-23045083)
chr5 (102-170)||(16311304-16311372)
chr5 (91-177)||(2681215-2681301)
chr5 (92-186)||(34259255-34259349)
chr5 (93-135)||(40517807-40517849)
chr5 (93-186)||(6810159-6810252)
chr5 (416-453)||(18572636-18572673)
[»] chr1 (14 HSPs)
chr1 (89-164)||(23058464-23058539)
chr1 (89-170)||(35069899-35069980)
chr1 (95-189)||(48125674-48125768)
chr1 (94-180)||(34673282-34673368)
chr1 (94-177)||(12718775-12718858)
chr1 (89-176)||(16237308-16237395)
chr1 (93-180)||(29936418-29936505)
chr1 (101-191)||(3627974-3628064)
chr1 (101-162)||(50426679-50426740)
chr1 (145-201)||(17516418-17516474)
chr1 (101-180)||(19572512-19572591)
chr1 (416-455)||(32960868-32960907)
chr1 (101-170)||(10778577-10778646)
chr1 (102-187)||(38686673-38686758)
[»] scaffold0008 (2 HSPs)
scaffold0008 (88-180)||(67745-67837)
scaffold0008 (88-180)||(75588-75680)
[»] scaffold0005 (1 HSPs)
scaffold0005 (88-180)||(211360-211452)
[»] chr6 (12 HSPs)
chr6 (89-192)||(29199873-29199976)
chr6 (95-192)||(7393875-7393972)
chr6 (96-180)||(28079696-28079780)
chr6 (93-191)||(14410844-14410942)
chr6 (93-180)||(2367327-2367414)
chr6 (93-188)||(24602848-24602943)
chr6 (96-177)||(20349068-20349149)
chr6 (89-161)||(9458660-9458732)
chr6 (101-189)||(32959869-32959957)
chr6 (93-180)||(5863383-5863470)
chr6 (93-180)||(32853845-32853932)
chr6 (84-170)||(256502-256588)
[»] scaffold0059 (1 HSPs)
scaffold0059 (84-177)||(70087-70180)
[»] scaffold0013 (2 HSPs)
scaffold0013 (84-180)||(105469-105565)
scaffold0013 (84-177)||(128124-128217)
[»] scaffold0198 (1 HSPs)
scaffold0198 (93-186)||(20733-20826)
[»] scaffold0036 (1 HSPs)
scaffold0036 (95-180)||(33396-33481)
[»] chr3 (11 HSPs)
chr3 (93-180)||(44172627-44172714)
chr3 (93-180)||(44179327-44179414)
chr3 (96-170)||(34119660-34119734)
chr3 (95-180)||(4016044-4016129)
chr3 (93-170)||(19111735-19111812)
chr3 (84-120)||(2487787-2487823)
chr3 (93-141)||(7469817-7469865)
chr3 (93-180)||(52198156-52198243)
chr3 (89-163)||(1772416-1772490)
chr3 (93-135)||(39728672-39728714)
chr3 (96-177)||(30904819-30904899)
[»] scaffold0542 (1 HSPs)
scaffold0542 (417-450)||(11246-11279)
[»] scaffold0022 (1 HSPs)
scaffold0022 (96-180)||(90601-90685)
[»] scaffold0015 (1 HSPs)
scaffold0015 (89-176)||(55902-55988)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 173 - 609
Target Start/End: Complemental strand, 11880793 - 11880365
Alignment:
Q  173 caaacccagtcaaaacggggttggtttgggtgggtactcacaggcacatattttgttgtcatgcctagtggaaatgtgaaattaaggcaaaatgtagacg 272  Q
    |||||||||||||||||||||||||||||| |||||  |   | ||   ||||||||| |||||||||| | ||||||||||||||| |||| |||||||    
T  11880793 caaacccagtcaaaacggggttggtttgggcgggtatccgtggacatggattttgttgccatgcctagtcggaatgtgaaattaaggaaaaaagtagacg 11880694  T
Q  273 aaacgaccacccaagtattcaaacgtgttttgcatatgttagaacactagaaacttgtacaagaattgtttagaacaacaaccactacgaatatactaag 372  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |    
T  11880693 aaacgaccacc-aagtattcaaacatgttttgcatatgttagaacactagaaacttgcacaagaattgttcagaacaacaactactacgaatatactagg 11880595  T
Q  373 gtcgagcaatatacattgtgcacgatgacaacaacgtgcatctggtagatttaaatgtaatgttgatgcatcattctcttctatcaataataaggtgggc 472  Q
    || ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||          
T  11880594 gttgagcaatatacattgtgcacgatgacaacaatgtgcatctgatagatttaaatgtaacgttgatgcatcattctcttctatcaataataag------ 11880501  T
Q  473 atcagtatgtgtattcgcgatgccgaaaagtgctttgtgtttgtgctagcaaaaa-cccatgattctccccattgtgttcaatggatgtcgatgaagcgt 571  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  11880500 --tagtatgtgtattcgcgatgccgaaaagtgctttgtgtttgtgctagcaaaaaccccctgattctccccattgtgttcagtggatgtcgatgaagcgt 11880403  T
Q  572 caagactctgtcaaccttgtaatgggtgactgattttg 609  Q
    || |||| |||||| |||||||||||||||||||||||    
T  11880402 caggactttgtcaagcttgtaatgggtgactgattttg 11880365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 173 - 609
Target Start/End: Complemental strand, 11898209 - 11897781
Alignment:
Q  173 caaacccagtcaaaacggggttggtttgggtgggtactcacaggcacatattttgttgtcatgcctagtggaaatgtgaaattaaggcaaaatgtagacg 272  Q
    |||||||||||||||||||||||||||||| |||||  |   | ||   ||||||||| |||||||||| | ||||||||||||||| |||| |||||||    
T  11898209 caaacccagtcaaaacggggttggtttgggcgggtatccgtggacatggattttgttgccatgcctagtcggaatgtgaaattaaggaaaaaagtagacg 11898110  T
Q  273 aaacgaccacccaagtattcaaacgtgttttgcatatgttagaacactagaaacttgtacaagaattgtttagaacaacaaccactacgaatatactaag 372  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |    
T  11898109 aaacgaccacc-aagtattcaaacatgttttgcatatgttagaacactagaaacttgcacaagaattgttcagaacaacaactactacgaatatactagg 11898011  T
Q  373 gtcgagcaatatacattgtgcacgatgacaacaacgtgcatctggtagatttaaatgtaatgttgatgcatcattctcttctatcaataataaggtgggc 472  Q
    || ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||          
T  11898010 gttgagcaatatacattgtgcacgatgacaacaatgtgcatctgatagatttaaatgtaacgttgatgcatcattctcttctatcaataataag------ 11897917  T
Q  473 atcagtatgtgtattcgcgatgccgaaaagtgctttgtgtttgtgctagcaaaaa-cccatgattctccccattgtgttcaatggatgtcgatgaagcgt 571  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  11897916 --tagtatgtgtattcgcgatgccgaaaagtgctttgtgtttgtgctagcaaaaaccccctgattctccccattgtgttcagtggatgtcgatgaagcgt 11897819  T
Q  572 caagactctgtcaaccttgtaatgggtgactgattttg 609  Q
    || |||| |||||| |||||||||||||||||||||||    
T  11897818 caggactttgtcaagcttgtaatgggtgactgattttg 11897781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 627 - 750
Target Start/End: Complemental strand, 11880375 - 11880252
Alignment:
Q  627 gactgattttggttttgttaacacgaatttttctcttgattcaaagattgttgtcgatgtatttaatgttaataacaataataacaatgagtttgacaac 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11880375 gactgattttggttttgttaacacgaatttttctcttgattcaaagattgttgtcgatgtatttaatgttaataacagtaataacaatgagtttgacaac 11880276  T
Q  727 atcattcatcattgtagacggttg 750  Q
    ||||||||||| ||||||||||||    
T  11880275 atcattcatcactgtagacggttg 11880252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 627 - 750
Target Start/End: Complemental strand, 11897791 - 11897668
Alignment:
Q  627 gactgattttggttttgttaacacgaatttttctcttgattcaaagattgttgtcgatgtatttaatgttaataacaataataacaatgagtttgacaac 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11897791 gactgattttggttttgttaacacgaatttttctcttgattcaaagattgttgtcgatgtatttaatgttaataacagtaataacaatgagtttgacaac 11897692  T
Q  727 atcattcatcattgtagacggttg 750  Q
    ||||||||||| ||||||||||||    
T  11897691 atcattcatcactgtagacggttg 11897668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 11880964 - 11880885
Alignment:
Q  9 aagagagataactcgagtgagtgccatcgtgtgacagacacatgtggtgaaatggtttttagggtttgagtttctattta 88  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11880964 aagagggataactcgagtgagtgccatcgtctgacagacacatgtggtgaaatggtttttagggtttgagtttctattta 11880885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 11898380 - 11898301
Alignment:
Q  9 aagagagataactcgagtgagtgccatcgtgtgacagacacatgtggtgaaatggtttttagggtttgagtttctattta 88  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11898380 aagagggataactcgagtgagtgccatcgtctgacagacacatgtggtgaaatggtttttagggtttgagtttctattta 11898301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 17469256 - 17469355
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgggg 192  Q
    ||||||| ||||||||| ||||||||||  ||||| ||||||| |||||   ||||||  ||||||||||||| |||| |||||||||||||||||||||    
T  17469256 gggtttgggtatgggtttggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaacccagtcaaaacgggg 17469355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 5700360 - 5700454
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgg 190  Q
    |||| ||||||||||| ||||||||  ||||||||||||| | ||||  |||| |  ||||||||||||||||||   |||||||||||||||||    
T  5700360 tttgggtatgggttcgaggtgggtatctatatccccgttaccagtctcatacctgtgttttgaaatcgggaaaaacttaaacccagtcaaaacgg 5700454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 27056637 - 27056555
Alignment:
Q  98 tgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||||||||||||||||||||  |||| |||||||| |||||   |||| | | ||||||||||||||||| |||||||||    
T  27056637 tgtgtatgggttcggggtgggtagatataaccccgttacccgtcccatacctgtactttgaaatcgggaaaaacccaaaccca 27056555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 1063511 - 1063595
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||| ||||| |||||||||||||| |||||| ||||||| |||||   ||||||  |||||||||||||||||| ||| |||||    
T  1063511 tttgggtatgagttcggggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcgggaaaaacccataccca 1063595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 2183697 - 2183609
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    ||||||||||| ||||| ||||||||||||||  |||||| || ||| |  ||| ||||||| |||||||||||||  |||||||||||    
T  2183697 ggtagggtttgagtatgagttcggggtgggtacatatatctccattacctctctcgtacccgtattttgaaatcggagaaaatccaaac 2183609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 9642430 - 9642339
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgggg 192  Q
    ||||||||||||| ||| ||  |||| |||||||| |||||   ||||||  ||||||||||||| |||| ||||||||||||||| |||||    
T  9642430 gtatgggttcgggatggatatatataaccccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaacccagtcaaagcgggg 9642339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 28345494 - 28345577
Alignment:
Q  95 gtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacc 178  Q
    ||||| |||||||||||||||||||   ||||||| ||||| || || ||||||||  ||||| ||||||| ||||||||||||    
T  28345494 gtttgggtatgggttcggggtgggtgcctatatcctcgttacccatcctgtacccgtgttttggaatcgggtaaaatccaaacc 28345577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 14155524 - 14155617
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    |||||||  ||||||| |||||  || ||||||| ||| ||||||| ||||| || |||| ||||||  |||||||||||||||||| ||||||    
T  14155524 atttaggatgggtttgggtatgaatttggggtggataaatatatcctcgttacccatcttatacccgtgttttgaaatcgggaaaaacccaaac 14155617  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 40248450 - 40248381
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||||||||||| ||||||  ||||| ||||||||||||||  ||||||  ||||||||||||| ||||    
T  40248450 gtatgggttcgggatgggtacctatatacccgttatccgtctcatacccgtgttttgaaatcggggaaaa 40248381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 11880843 - 11880795
Alignment:
Q  83 tatttaggtagggtttgtgtatgggttcggggtgggtaattatatcccc 131  Q
    ||||| ||||||||||| |||||| |||||||||||||| |||||||||    
T  11880843 tatttgggtagggtttgggtatggattcggggtgggtaactatatcccc 11880795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 11898259 - 11898211
Alignment:
Q  83 tatttaggtagggtttgtgtatgggttcggggtgggtaattatatcccc 131  Q
    ||||| ||||||||||| |||||| |||||||||||||| |||||||||    
T  11898259 tatttgggtagggtttgggtatggattcggggtgggtaactatatcccc 11898211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 10297455 - 10297542
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaa 176  Q
    ||||||||||  |||||||||| |||| ||||  ||||||||||||| | |||  || |||| |||||||||||||| |||| |||||    
T  10297455 ggtagggttttggtatgggttcagggtaggtacatatatccccgttacctgtcccgtccccgtattttgaaatcggggaaaacccaaa 10297542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 15068678 - 15068588
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||| | ||||||||||||||||| ||  ||||| ||||||| | |||  ||||||| |||||||||||||| |||| || ||||||    
T  15068678 ggtagggttcgggtatgggttcggggtggatacatatat-cccgttacctgtcccgtacccgtattttgaaatcggggaaaacccgaaccca 15068588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 17084194 - 17084123
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgg 164  Q
    |||||||  |||| ||||||||||||||  ||||||||||||| |||||| |||||||  |||| |||||||    
T  17084194 gggtttggatatgagttcggggtgggtatctatatccccgttacccgtctcgtacccgtgttttaaaatcgg 17084123  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 20399593 - 20399680
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| | ||||||||||||||||||  ||||| ||||||| |||||   ||||||  ||||||||||||  |||| |||||||||    
T  20399593 gggtttgggaatgggttcggggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggagaaaacccaaaccca 20399680  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 2189938 - 2189904
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaatt 123  Q
    ||||||||||| |||||||||||||||||||||||    
T  2189938 ggtagggtttgagtatgggttcggggtgggtaatt 2189904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 9476100 - 9476058
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgtta 135  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||    
T  9476100 gggtttgggtatgggttcgaggtgggtatttatatccccgtta 9476058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 30481506 - 30481424
Alignment:
Q  95 gtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    ||||| ||||||||||||||||||||  ||||||| | |||  |||||  ||| || ||||||||||| ||||||| ||||||    
T  30481506 gtttgggtatgggttcggggtgggtacctatatcctcattactcgtctcatactcgtattttgaaatcaggaaaaacccaaac 30481424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 6388573 - 6388516
Alignment:
Q  123 tatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||||| ||||||||||||||  |||| |||||||| || | |||||||||    
T  6388573 tatatccccgttacccgtcttgtacccgtgttttaaaatcggggaagacccaaaccca 6388516  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 24927950 - 24927999
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtct 142  Q
    ||||||| ||||||||||||||||||||  ||||| ||||||| ||||||    
T  24927950 gggtttgggtatgggttcggggtgggtacctatatacccgttacccgtct 24927999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 89 - 240
Target Start/End: Original strand, 21544582 - 21544733
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaac 188  Q
    ||||||||||| ||||||||||||||||||||  ||||||||| ||| | |||  ||||||| ||||||||||||||||||||||||||||| ||||| |    
T  21544582 ggtagggtttgggtatgggttcggggtgggtacatatatccccattacctgtcccgtacccgtattttgaaatcgggaaaaatccaaacccaatcaaatc 21544681  T
Q  189 ggggttggtttgggtgggtactcacaggcacatattttgttgtcatgcctag 240  Q
      |||||||||||| |||||| ||  ||||    ||||||||||||||||||    
T  21544682 atggttggtttgggcgggtacccatgggcatgggttttgttgtcatgcctag 21544733  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 31782615 - 31782766
Alignment:
Q  88 aggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaa 187  Q
    ||||| |||||| ||||| ||| ||||||||||  ||||||||||||| | ||   ||||||| |||||||||||||| |||| |||||||||||||||     
T  31782615 aggtaaggtttgggtatgagtttggggtgggtacatatatccccgttacctgtaccgtacccgtattttgaaatcggggaaaacccaaacccagtcaaat 31782714  T
Q  188 cggggttggtttgggtgggtactcacaggcacatattttgttgtcatgccta 239  Q
    || |||||||||||| |||||| ||  |||||  ||||||||| ||||||||    
T  31782715 cgaggttggtttgggcgggtacccatgggcacggattttgttgccatgccta 31782766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 30266423 - 30266325
Alignment:
Q  88 aggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaa 186  Q
    |||||||||||| ||||||||||||||||| ||  ||||||||||||| ||||| |||||||| ||| ||||||||| ||||| |||||||||||||||    
T  30266423 aggtagggtttgggtatgggttcggggtggatacatatatccccgttacccgtcctgtacccgtattatgaaatcggaaaaaaaccaaacccagtcaaa 30266325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 30285765 - 30285863
Alignment:
Q  88 aggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaa 186  Q
    |||||||||||| ||||||||||||||||| ||  ||||||||||||| ||||| |||||||| ||| ||||||||| ||||| |||||||||||||||    
T  30285765 aggtagggtttgggtatgggttcggggtggatacatatatccccgttacccgtcctgtacccgtattatgaaatcggaaaaaaaccaaacccagtcaaa 30285863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 29527817 - 29527918
Alignment:
Q  91 tagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgg 190  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||| |||||  ||||||| |||||||||||||| |||| ||||||||  ||||| |||    
T  29527817 tagggtttgggtatgggttcggggtgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaacccaaaccctatcaaagcgg 29527916  T
Q  191 gg 192  Q
    ||    
T  29527917 gg 29527918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 14606018 - 14605926
Alignment:
Q  88 aggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||| ||||| ||||||||||||||||||||  |||||||| |||| |||||| ||||||| |||||||||||||  |||| |||||||||    
T  14606018 aggtagagtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaaacccaaaccca 14605926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 10574511 - 10574408
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaac 188  Q
    ||||||||||| ||||| |||||||| |||||  ||||||||||||| |||||  ||||| | ||| |||||||||| ||||| |||||||||||||| |    
T  10574511 ggtagggtttgggtatgagttcggggcgggtacatatatccccgttacccgtcccgtacctgtattatgaaatcggggaaaattcaaacccagtcaaatc 10574412  T
Q  189 gggg 192  Q
    ||||    
T  10574411 gggg 10574408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 11173031 - 11173096
Alignment:
Q  144 gtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggggttggtttgggtgggtac 209  Q
    ||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||    
T  11173031 gtacccgtattttgaaatcggggaaaacccaaacccagtcaaatcggggttggtttgggcgggtac 11173096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 47103741 - 47103903
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatcc------------aaa 176  Q
    ||||||||||| ||||||||||||||||||||  ||||||| ||||| ||| |  ||||||| |||||||||| ||| |||| ||            |||    
T  47103741 ggtagggtttgggtatgggttcggggtgggtacatatatccgcgttacccgccccgtacccgtattttgaaattggggaaaacccaaacccatacaaaaa 47103840  T
Q  177 cccagtcaaaacggggttggtttgggtgggtactcacaggcacatattttgttgtcatgccta 239  Q
    |||||||||| |||||||| ||||||||||||| ||  ||||||  |||||||||||||||||    
T  47103841 cccagtcaaatcggggttgatttgggtgggtacccatgggcacaggttttgttgtcatgccta 47103903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 31416023 - 31415935
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    ||||||||||| || |||||||||||||||||  |||||||| ||||||| ||  ||||||| |||||||||||||  |||||||||||    
T  31416023 ggtagggtttgagtgtgggttcggggtgggtacatatatccctgttatccatcccgtacccgtattttgaaatcggagaaaatccaaac 31415935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 1866641 - 1866560
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||| ||||| ||||||||||||||||| ||  ||||||| | ||| |||||| ||||||| |||||||||||||||||||    
T  1866641 ggtagagtttgggtatgggttcggggtggatacatatatccgcattacccgtctcgtacccgtattttgaaatcgggaaaaa 1866560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 24637240 - 24637304
Alignment:
Q  145 tacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggggttggtttgggtgggtac 209  Q
    |||||| |||||||||||||| |||| ||||||||||||||| | ||||||||||||| ||||||    
T  24637240 tacccgtattttgaaatcggggaaaacccaaacccagtcaaatcagggttggtttgggcgggtac 24637304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 25298921 - 25298828
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaa 186  Q
    ||||||| |||||||||||||||||  |  ||||||||| ||| || ||  |||||||  |||||||||| ||||||| |||||||||||||||    
T  25298921 gggtttgggtatgggttcggggtggacagctatatccccattacccatcccgtacccgtgttttgaaatccggaaaaacccaaacccagtcaaa 25298828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 4741304 - 4741256
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtc 141  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  4741304 gggtttttgtatgggttcggggtgggtacttatatccctgttatccgtc 4741256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 13773202 - 13773238
Alignment:
Q  417 gtagatttaaatgtaatgttgatgcatcattctcttc 453  Q
    |||||||||||||||||||||||||||||||||||||    
T  13773202 gtagatttaaatgtaatgttgatgcatcattctcttc 13773238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 15733616 - 15733544
Alignment:
Q  91 tagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcg 163  Q
    ||||||||| ||| | ||||||||||||||  |||||| |||||| |||||| ||||||| ||||||||||||    
T  15733616 tagggtttgagtacgagttcggggtgggtacatatatctccgttacccgtctcgtacccgtattttgaaatcg 15733544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 10302099 - 10302178
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||||||||||||  |||| |||||||| ||||||  |||||| | |||||||||||| |||| | |||||||    
T  10302099 gtatgggttcggggtgggtacatataaccccgttacccgtctcatacccgtactttgaaatcggggaaaacctaaaccca 10302178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 25941147 - 25941229
Alignment:
Q  95 gtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    ||||| ||||||||||||||||||||  ||| | ||||||| | |||  |||||||  |||||||||||||||||| ||||||    
T  25941147 gtttgggtatgggttcggggtgggtacctatcttcccgttacctgtcccgtacccgtgttttgaaatcgggaaaaacccaaac 25941229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 12825548 - 12825451
Alignment:
Q  94 ggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggg 191  Q
    |||||| |||| ||||| |||||||||  |||||  |||||| |||||   ||||||  ||||||||||||| |||| |||||| |||||||||||||    
T  12825548 ggtttgggtataggttcagggtgggtacgtatatatccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaactcagtcaaaacggg 12825451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 26564838 - 26564910
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcggg 165  Q
    ||||||| |||||| |||||||||||||  ||||| ||||||| |||||   ||||||| |||||||||||||    
T  26564838 gggtttgggtatggtttcggggtgggtacctatatacccgttacccgtcccatacccgcgttttgaaatcggg 26564910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 1724398 - 1724311
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| ||||||||||||||||||||  |||||  |||||| |||||   |||||   ||||||||||||| |||| |||||||||    
T  1724398 gggtttgggtatgggttcggggtgggtacctatataaccgttacccgtcccatacccatgttttgaaatcggggaaaacccaaaccca 1724311  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 45065252 - 45065326
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcg 163  Q
    ||||||||||| ||||| ||||||| ||||||  |||||||| ||||  ||||  ||||||| ||||||||||||    
T  45065252 ggtagggtttgggtatgcgttcgggatgggtacatatatccctgttactcgtcccgtacccgtattttgaaatcg 45065326  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 21423868 - 21423917
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtct 142  Q
    ||||||||||||||||| ||||||||||  ||||| ||||||| ||||||    
T  21423868 gggtttgtgtatgggtttggggtgggtacctatatacccgttacccgtct 21423917  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 30672966 - 30673052
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    ||||||||||| |||| |||||| ||||  ||  ||||||||| |||||||||  ||||||| ||||| |||||||  |||||||||||    
T  30672966 ggtagggtttgggtataggttcgaggtg--tacatatatccccattatccgtcccgtacccgtattttaaaatcggagaaaatccaaac 30673052  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 33516160 - 33516103
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccg 150  Q
    ||||||| |||| ||||||||||||||| ||||||||| |||| || ||| |||||||    
T  33516160 gggtttgggtataggttcggggtgggtacttatatccctgttacccatctcgtacccg 33516103  T

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Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 84 - 239
Target Start/End: Original strand, 18485641 - 18485796
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtc 183  Q
    |||| |||| |||||| |||||||||| |||||||||  ||||||||||||| ||||  |||||||| ||||| |||||| | | || ||||||||||||    
T  18485641 atttgggtaaggtttgggtatgggttcagggtgggtacatatatccccgttacccgtactgtacccgtattttaaaatcgaggataacccaaacccagtc 18485740  T
Q  184 aaaacggggttggtttgggtgggtactcacaggcacatattttgttgtcatgccta 239  Q
    ||| ||||||||||||||| |||||| ||  |||||  ||||||||| ||||||||    
T  18485741 aaatcggggttggtttgggcgggtacccatgggcacggattttgttgccatgccta 18485796  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 3547164 - 3547251
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaa 176  Q
    |||||||||||  |||||||||||||||||||  |||||| |||||| |||||  ||||||| ||||||||||||| ||||| |||||    
T  3547164 ggtagggtttggatatgggttcggggtgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcggtaaaaacccaaa 3547251  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 38342610 - 38342519
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||  ||| ||| ||||| |||||||| ||||  ||||||||    
T  38342610 ggtagggtttgggtatgggttcggggtgggtacatatatccccgttacccgtcccgtatccgtattttaaaatcggggaaaactcaaaccca 38342519  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 30978920 - 30979011
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    |||| ||||||||||| ||||||||||||||||| ||  ||||||| ||||||||  |  ||||||| ||||||||||||||||||| ||||||    
T  30978920 atttgggtagggtttgggtatgggttcggggtggatacatatatcctcgttatcctcc--gtacccgtattttgaaatcgggaaaaacccaaac 30979011  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 43371551 - 43371632
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||||||||| ||||| ||| ||||||||||  ||||||||||||| |||||  ||||||| ||||| |||||||| ||||    
T  43371551 ggtagggtttgggtatgagtttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaa 43371632  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 44057880 - 44057969
Alignment:
Q  89 ggtagggtttgtgtatgggttcgggg-tgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    ||||||||||| |||||||||||||| ||||||  ||||||||| ||| |||||  ||||| | ||||||||||| || |||||||||||    
T  44057880 ggtagggtttgggtatgggttcgggggtgggtacatatatccccattacccgtcccgtaccggtattttgaaatcagggaaaatccaaac 44057969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 42798074 - 42798026
Alignment:
Q  94 ggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtct 142  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  42798074 ggtttgtgtatgggttcggggtgggtacttatatacccgttacccgtct 42798026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 6027968 - 6027877
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgggg 192  Q
    ||||||||||||||||||||  ||||| || |||| ||||||  |||||   |||| |||||||| |||| ||||||||| |||||||||||    
T  6027968 gtatgggttcggggtgggtacctatatacctgttacccgtctcatacccatgttttaaaatcggggaaaacccaaacccaatcaaaacgggg 6027877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 37999485 - 37999572
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| ||||| |||||||||||||| |||||| ||||||| ||||||  ||||||  |||||| |||||| |||| ||| |||||    
T  37999485 gggtttgggtatgagttcggggtgggtacttatatacccgttacccgtctcatacccgtgttttgagatcggggaaaacccataccca 37999572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 45256833 - 45256902
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    |||||||||||||||||||| |||||| ||| ||| ||||||  ||||||  ||||||||||||| ||||    
T  45256833 gtatgggttcggggtgggtacttatatacccattaaccgtctcatacccgtgttttgaaatcggggaaaa 45256902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 6164552 - 6164456
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggggttggt 197  Q
    ||||| ||||||||||||||  |||||| |||||| |||||  ||||||  |||||||||| ||| |||| ||||||||| | |||  |||||||||    
T  6164552 gtatgagttcggggtgggtacatatatcaccgttacccgtcccgtacccaaattttgaaattggggaaaacccaaacccatttaaattggggttggt 6164456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 14331525 - 14331577
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtc 141  Q
    ||||||||||| |||||||||||| |||||||  ||||||||||||| |||||    
T  14331525 ggtagggtttgggtatgggttcggagtgggtacatatatccccgttacccgtc 14331577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 22900804 - 22900883
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||| ||||||||||||||  |||| ||||||||  ||||   ||||||  |||||||||||||||||| |||||||||    
T  22900804 gtatgagttcggggtgggtatatataaccccgttactcgtcccatacccgtgttttgaaatcgggaaaaacccaaaccca 22900883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 13705440 - 13705371
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||||||||||||||||||  ||||| ||||||| | ||||  ||||||  ||||||||||||| ||||    
T  13705440 gtatgggttcggggtgggtacctatatacccgttacctgtctcatacccgtgttttgaaatcggggaaaa 13705371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 13830739 - 13830780
Alignment:
Q  94 ggtttgtgtatgggttcggggtgggtaattatatccccgtta 135  Q
    |||||| |||||||||||||||||||| |||||| |||||||    
T  13830739 ggtttgagtatgggttcggggtgggtacttatatacccgtta 13830780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 32546194 - 32546285
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||| ||||   ||||||| |||||||||||||||||||||||||||||    
T  32546194 ggtagggtttgggtatgggttcggggtgggtacatatatccccgttacccgttccgtacccgtattttgaaatcgggaaaaatccaaaccca 32546285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 44845223 - 44845135
Alignment:
Q  92 agggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||||||||||||||||||||||||||| ||||||| | ||| |||||  ||||||| ||| |||||||||| |||| |||||||||    
T  44845223 agggtttgtgtatgggttcggggtgggtaaatatatcctcattaaccgtcccgtacccgtattatgaaatcggggaaaacccaaaccca 44845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 27063140 - 27063214
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcg 163  Q
    ||||||||||| ||||| |||||||||| |||  ||||||||||||||||||| |||||||| ||||||||||||    
T  27063140 ggtagggtttgggtatgagttcggggtgagtacatatatccccgttatccgtcctgtacccgtattttgaaatcg 27063214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 3920547 - 3920642
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggg 191  Q
    |||| ||||||||||||||||||||  ||||| || ||||||||||   |||| |  ||||||||||||| |||| ||||||||||||||||||||    
T  3920547 tttgggtatgggttcggggtgggtacctatatacctgttatccgtcccataccagtgttttgaaatcggggaaaacccaaacccagtcaaaacggg 3920642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 31426010 - 31426099
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacc 178  Q
    ||||||||||| ||||| ||||||||||| ||  ||||||||||||| ||||||  |||||| ||||| |||||||| |||| |||||||    
T  31426010 ggtagggtttgggtatgcgttcggggtggatacatatatccccgttacccgtctcatacccgtatttttaaatcggggaaaacccaaacc 31426099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 41103653 - 41103749
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||||  |||||| ||||||||||||||||||||| |||||| ||||||| |||||   ||||||  ||||||||||||| |||| ||| |||||    
T  41103653 atttaggacgggtttatgtatgggttcggggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcggggaaaacccataccca 41103749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 18683976 - 18684067
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||| ||||||||||| ||||| ||  |||||||| |||| |||||  ||||||| |||||||||||||| |||| || ||||||    
T  18683976 ggtagggtttgggtatgggttcgaggtggatacatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaacccgaaccca 18684067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 45380121 - 45380200
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||||||||||||  ||||| ||||||| |||||   |||||| ||||||||||||||||||| ||| |||||    
T  45380121 gtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgaaatcgggaaaaacccataccca 45380200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 743
Target Start/End: Complemental strand, 5725248 - 5725134
Alignment:
Q  629 ctgattttggttttgttaacacgaatttttctcttgattcaaagattgttgtcgatgtatttaatgttaataacaataataacaatgagtttgacaacat 728  Q
    ||||||| ||||| | || ||| || || ||||||||||| |||||||| ||| |||  ||||||| | | ||||| |||||||| ||||||||||| ||    
T  5725248 ctgatttgggtttcgatagcacaaacttctctcttgattcgaagattgtcgtcaatgattttaatggtgacaacaacaataacaacgagtttgacaatat 5725149  T
Q  729 cattcatcattgtag 743  Q
    |||||| ||||||||    
T  5725148 cattcaccattgtag 5725134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 22973391 - 22973481
Alignment:
Q  90 gtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||||||| ||||||||||| ||||||||   |||||||| ||| |||||  ||||||| |||||||||||| | |||| |||||||||    
T  22973391 gtagggtttgggtatgggttcgaggtgggtacagatatccccattacccgtcccgtacccgtattttgaaatcgtggaaaacccaaaccca 22973481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 21750785 - 21750874
Alignment:
Q  90 gtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccc 179  Q
    |||||||||| ||||| ||||| ||||||||  ||||||||||| | ||||||  || ||| ||||||||||||||||||| | ||||||    
T  21750785 gtagggtttgggtatgagttcgaggtgggtacatatatccccgtcacccgtctcatatccgtattttgaaatcgggaaaaacctaaaccc 21750874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 26622959 - 26623056
Alignment:
Q  95 gtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgggg 192  Q
    ||||| |||||||||||||||||||| |||||| ||| ||| || ||   ||||||  |||||||||| || |||| ||||||||| |||||||||||    
T  26622959 gtttgggtatgggttcggggtgggtacttatatacccattacccatcccatacccgtgttttgaaatcagggaaaacccaaacccactcaaaacgggg 26623056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 3157089 - 3157176
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| |||| ||||||| |||||||  |||||||||||||||||||   |||||  |||||||||||||| |||| | |||||||    
T  3157089 gggtttgggtataggttcggtgtgggtacctatatccccgttatccgtcccatacccatattttgaaatcggggaaaacctaaaccca 3157176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 12980383 - 12980470
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| |||||||||||||||||||| |||||| ||| ||| |||||   ||||||  ||||||||||||| |||| | |||||||    
T  12980383 gggtttgggtatgggttcggggtgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaaccaaaaccca 12980470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 16811739 - 16811829
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaa 187  Q
    |||| ||||||||||||| ||||||  ||||| ||| ||||||||||  ||||||  |||||| |||||| ||||||||||| |||||||||    
T  16811739 tttgggtatgggttcggg-tgggtatctatatacccattatccgtctcatacccgtgttttgagatcggggaaaatccaaactcagtcaaaa 16811829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 18825959 - 18825872
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| ||| ||||||||||||||||  ||||| ||||||| |||||   ||||||  ||||||||||||| |||| |||||||||    
T  18825959 gggtttgggtacgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaaccca 18825872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 23475350 - 23475251
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgggg 192  Q
    ||||||| |||||||||||  |||||||  ||||||||| ||| || ||    |||||  |||||||||||||||||| ||||||||||||||| |||||    
T  23475350 gggtttgggtatgggttcgaagtgggtacatatatccccattacccatcccaaacccgtgttttgaaatcgggaaaaacccaaacccagtcaaagcgggg 23475251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 29015049 - 29014962
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggta-----at-tatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||||||||| ||||||||||||||||| ||     || |||||||||| ||||||||  ||||||| |||||||||||||||||||    
T  29015049 ggtagggtttgagtatgggttcggggtggatatatatatatatatccccgctatccgtcccgtacccgtattttgaaatcgggaaaaa 29014962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 26004553 - 26004463
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggg 191  Q
    ||||||||||||||||||||  ||||| || |||| |||||   |||||   ||||||||||| | |||| ||||||||||||||||||||    
T  26004553 gtatgggttcggggtgggtatctatatacctgttacccgtcccatacccaagttttgaaatcgaggaaaacccaaacccagtcaaaacggg 26004463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 27063336 - 27063417
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||||||| | ||||| ||||||||||||||  ||||| ||||||| |||||  ||||||| ||| | |||||||| ||||    
T  27063336 ggtagggttggggtatgagttcggggtgggtacatatattcccgttacccgtcccgtacccgtattattaaatcggggaaaa 27063417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 28309494 - 28309567
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatc 162  Q
    ||||||||||| ||||| ||||||||| | ||  ||||| ||||||| |||||  ||||||| |||||||||||    
T  28309494 ggtagggtttgggtatgagttcggggtagatacatatattcccgttacccgtcccgtacccgtattttgaaatc 28309567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 32546292 - 32546329
Alignment:
Q  172 ccaaacccagtcaaaacggggttggtttgggtgggtac 209  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  32546292 ccaaacccagtcaaatcggggttggtttgggtaggtac 32546329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 2966 - 3054
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    ||||||||||| ||||||||||||||||||||  |||||||| |||||||||| |||||||| |||||||||||||| |||| ||||||    
T  2966 ggtagggtttgagtatgggttcggggtgggtacatatatcccagttatccgtcctgtacccgtattttgaaatcggggaaaacccaaac 3054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 28569106 - 28569025
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    |||| ||||||||||||||||||||  ||||||||||||| |||||  |||||||||||||||||||||| |||||||||||    
T  28569106 tttgggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccgcattttgaaatcggggaaaatccaaac 28569025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 12712649 - 12712546
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaac 188  Q
    ||||||||||| ||||||||||| ||||||||  |||||| ||||||||||||  ||||||| |||||||||||||  |||| |||||| |||||||| |    
T  12712649 ggtagggtttgggtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaaacccaaactcagtcaaatc 12712550  T
Q  189 gggg 192  Q
    ||||    
T  12712549 gggg 12712546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 12773913 - 12773810
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaac 188  Q
    ||||||||||| ||||||||||| ||||||||  |||||| ||||||||||||  ||||||| |||||||||||||  |||| |||||| || ||||| |    
T  12773913 ggtagggtttgagtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaaacccaaactcaatcaaatc 12773814  T
Q  189 gggg 192  Q
    ||||    
T  12773813 gggg 12773810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 28569223 - 28569160
Alignment:
Q  25 gtgagtgccatcgtgtgacagacacatgtggtgaaatggtttttagggtttgagtttctattta 88  Q
    ||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28569223 gtgagtgtcgtcgtctgatagacacatgtggtgaaatggtttttagggtttgagtttctattta 28569160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 12250966 - 12251058
Alignment:
Q  88 aggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||||||||| |||||||||| | |||||||  |||||| | |||| |||||  ||||||| |||||||||||| ||||||||||| ||||    
T  12250966 aggtagggtttgggtatgggttcagagtgggtacatatatctctgttacccgtccggtacccgtattttgaaatcgtgaaaaatccaagccca 12251058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 638 - 742
Target Start/End: Original strand, 41313785 - 41313889
Alignment:
Q  638 gttttgttaacacgaatttttctcttgattcaaagattgttgtcgatgtatttaatgttaataacaataataacaatgagtttgacaacatcattcatca 737  Q
    |||||| || |||||||| |||||||||||| ||||| || ||| |||  ||||||| | ||||||||||||| || || |||| |||||| ||||||||    
T  41313785 gttttgatagcacgaattgttctcttgattcgaagatcgtcgtcaatgcttttaatggtgataacaataataataacgaatttggcaacattattcatca 41313884  T
Q  738 ttgta 742  Q
    |||||    
T  41313885 ttgta 41313889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 10822606 - 10822515
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgggg 192  Q
    ||||||||||||||||||||  |||| |||||||| ||||| | ||||||  ||||||||||||  |||| ||||| |||||||||| ||||    
T  10822606 gtatgggttcggggtgggtacatataaccccgttacccgtcctatacccgtgttttgaaatcggagaaaacccaaatccagtcaaaatgggg 10822515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 23045083 - 23044992
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||  ||||||||||||||||||||  |||||| |||||| || ||  ||||||| |||||||||||||| |||| | |||||||    
T  23045083 ggtagggttttggtatgggttcggggtgggtacatatatctccgttacccatcccgtacccgtattttgaaatcggggaaaacctaaaccca 23044992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 16311372 - 16311304
Alignment:
Q  102 tatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    |||||||||||||||||||  |||||||| ||||||||||| |||| ||  |||||||||||| |||||    
T  16311372 tatgggttcggggtgggtacctatatccctgttatccgtctcgtactcgtgttttgaaatcggaaaaaa 16311304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 2681215 - 2681301
Alignment:
Q  91 tagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    ||||||||| ||||||||||||||||| || | |||||||| ||| || ||  ||||| | |||||||||||||| |||| ||||||    
T  2681215 tagggtttgggtatgggttcggggtggatactcatatccccattacccatcccgtacctgtattttgaaatcggggaaaacccaaac 2681301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 34259255 - 34259349
Alignment:
Q  92 agggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaa 186  Q
    ||||||||  ||| ||||| |||||||||  ||||||| ||||| |||||  ||||||  |||||||||||| | ||||| ||||||||||||||    
T  34259255 agggtttggatataggttcagggtgggtacatatatcctcgttacccgtccggtacccatattttgaaatcgaggaaaattcaaacccagtcaaa 34259349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 40517807 - 40517849
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgtta 135  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  40517807 gggtttgagtatgggttcggggtgggtaactatatacccgtta 40517849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 186
Target Start/End: Original strand, 6810159 - 6810252
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaa 186  Q
    ||||||| |||||||||||||||| ||| |||||||| ||||| ||||   |||||||  || | |||||||| |||| |||||| || |||||    
T  6810159 gggtttgggtatgggttcggggtgagtacttatatcctcgttacccgttccgtacccgtgttctaaaatcggggaaaacccaaactcattcaaa 6810252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 18572673 - 18572636
Alignment:
Q  416 ggtagatttaaatgtaatgttgatgcatcattctcttc 453  Q
    |||||||||||||||||||||||||| || ||||||||    
T  18572673 ggtagatttaaatgtaatgttgatgcttctttctcttc 18572636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 23058464 - 23058539
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgg 164  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||| |||| ||||||||||||||||    
T  23058464 ggtagggtttgggtatgggttcggggtgggtacctatatccccgttacccgtctcgtactcgcattttgaaatcgg 23058539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 35069980 - 35069899
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||||||||| ||||||||||||||||||||  |||||||| |||| |||||||||||||| ||| |||||||||| ||||    
T  35069980 ggtagggtttgagtatgggttcggggtgggtacatatatccctgttacccgtcttgtacccgtattatgaaatcggggaaaa 35069899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 48125768 - 48125674
Alignment:
Q  95 gtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacg 189  Q
    ||||| ||||||||||||||||| ||  ||||||| ||||| |||||  |||||||  |||| ||||| |||||||||||||| |||||||||||    
T  48125768 gtttgggtatgggttcggggtggatacctatatcctcgttacccgtcccgtacccgtgttttaaaatcaggaaaaatccaaactcagtcaaaacg 48125674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 34673368 - 34673282
Alignment:
Q  94 ggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||| ||||||||||||||||||||  ||||| ||||||| | ||||  ||||||  ||||||||| |||||||| |||||||||    
T  34673368 ggtttgggtatgggttcggggtgggtacctatatacccgttaccagtctcatacccgtgttttgaaattgggaaaaacccaaaccca 34673282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 12718858 - 12718775
Alignment:
Q  94 ggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    |||||| |||||||||| |||||||||  |||||  |||||| |||||| |||| || ||| |||||||||| |||||||||||    
T  12718858 ggtttgggtatgggttcagggtgggtacatatatttccgttacccgtctcgtacacgtattatgaaatcggggaaaatccaaac 12718775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 16237395 - 16237308
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaa 176  Q
    ||||||||||| |||||||||||||||  |||  ||||||| ||||| |||||   |||||| |||||||||||||| |||| |||||    
T  16237395 ggtagggtttgggtatgggttcggggttagtacatatatcctcgttacccgtcccttacccgtattttgaaatcggggaaaacccaaa 16237308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 29936418 - 29936505
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| ||||||||||||||||||||  ||||| ||||||| |||||   |||||| ||||||| |||||| |||| ||| |||||    
T  29936418 gggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgagatcggggaaaacccataccca 29936505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 3628064 - 3627974
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggg 191  Q
    ||||||||||||||||||||  || || ||||||| |||||   ||||||  ||||||||||||| |||| | | ||||||||||||||||    
T  3628064 gtatgggttcggggtgggtacctacatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacctatacccagtcaaaacggg 3627974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 50426740 - 50426679
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatc 162  Q
    ||||||||||||||||||||  ||||| ||||||||||||||  ||||||  ||||||||||    
T  50426740 gtatgggttcggggtgggtacctatatacccgttatccgtctcatacccgtgttttgaaatc 50426679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 17516418 - 17516474
Alignment:
Q  145 tacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggggttggtttgg 201  Q
    |||||| ||| |||||||||| | || ||||||||||||||| ||||||||||||||    
T  17516418 tacccgtattatgaaatcggggataacccaaacccagtcaaatcggggttggtttgg 17516474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 19572591 - 19572512
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||||||||||||  ||||| ||||||| | |||   ||||||  |||||||||||||||||| ||| |||||    
T  19572591 gtatgggttcggggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaatcgggaaaaacccataccca 19572512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 32960868 - 32960907
Alignment:
Q  416 ggtagatttaaatgtaatgttgatgcatcattctcttcta 455  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  32960868 ggtagatttaaaggtaatgttgatgcatcattctcctcta 32960907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 10778646 - 10778577
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||||||||||||||| ||  |||| |||||||| |||||   ||||||  ||||||||||||||||||    
T  10778646 gtatgggttcggggtggatatctataaccccgttacccgtcccatacccgtgttttgaaatcgggaaaaa 10778577  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 38686673 - 38686758
Alignment:
Q  102 tatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaa 187  Q
    |||||||||||||||||||  |||| ||  ||||| ||||   |||||| ||||| |||||||| ||||||||||| || ||||||    
T  38686673 tatgggttcggggtgggtacatataaccatgttattcgtcccatacccgtattttaaaatcggggaaaatccaaactcaatcaaaa 38686758  T

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Target: scaffold0008 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 67745 - 67837
Alignment:
Q  88 aggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||||||||| |||| || ||||||||||||  |||||||||||||||||||  ||| ||| ||||| |||||||| ||||||||||||||    
T  67745 aggtagggtttgggtataggctcggggtgggtacatatatccccgttatccgtcccgtatccgtattttaaaatcggggaaaatccaaaccca 67837  T

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Target: scaffold0008; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 75588 - 75680
Alignment:
Q  88 aggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||||||||| |||| || ||||||||||||  |||||||||||||||||||  ||| ||| ||||| |||||||| ||||||||||||||    
T  75588 aggtagggtttgggtataggctcggggtgggtacatatatccccgttatccgtcccgtatccgtattttaaaatcggggaaaatccaaaccca 75680  T

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Target: scaffold0005 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 211360 - 211452
Alignment:
Q  88 aggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||||| ||||| ||||||||||||||||||||  |||||||| |||| |||||| ||||||| |||||||||||||  |||| |||||||||    
T  211360 aggtagagtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaaacccaaaccca 211452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 29199976 - 29199873
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaac 188  Q
    ||||| ||||| ||||||||||||||| | ||  |||||||| |||| |||||  ||||||| |||||||||||||| |||||||||||||| ||||| |    
T  29199976 ggtagagtttgggtatgggttcggggtagatacatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaatccaaacccaatcaaatc 29199877  T
Q  189 gggg 192  Q
    ||||    
T  29199876 gggg 29199873  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 7393972 - 7393875
Alignment:
Q  95 gtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacgggg 192  Q
    ||||| ||||||||||||||||| ||  ||||| ||| ||||||||||  ||| ||  ||||||||||||| |||||||||||||| |||||| ||||    
T  7393972 gtttgagtatgggttcggggtggatacctatatacccattatccgtctcttactcgtgttttgaaatcggggaaaatccaaacccaatcaaaatgggg 7393875  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 28079780 - 28079696
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||| ||||||||||||||||||||  ||||||||||||| |||||  ||||||   ||||||||||||| |||| |||||||||    
T  28079780 tttgggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccatgttttgaaatcggggaaaacccaaaccca 28079696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 14410942 - 14410844
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacggg 191  Q
    ||||||| ||||||||||||||||||||  ||||| ||||||| |||||   ||||||  |||||||||| || ||||  |||||| ||||||||||||    
T  14410942 gggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatctgggaaaactcaaacctagtcaaaacggg 14410844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 2367327 - 2367414
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| |||||||||||||||||||| |||||| ||||||| |||||   ||||||  |||||| |||||| |||| ||| |||||    
T  2367327 gggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccataccca 2367414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 24602943 - 24602848
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaac 188  Q
    ||||||| ||||||||||||||||||||  ||||| || |||| |||||   |||||   |||||||||| || |||| |||||||||||||||||    
T  24602943 gggtttgggtatgggttcggggtgggtatctatatacctgttacccgtcacatacccatgttttgaaatctgggaaaacccaaacccagtcaaaac 24602848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 20349068 - 20349149
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    |||| ||||| ||||||||||||||  |||||||||||||  ||||   ||||||  ||||||||||||| |||||||||||    
T  20349068 tttgggtatgagttcggggtgggtacctatatccccgttactcgtcccatacccgtgttttgaaatcggggaaaatccaaac 20349149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 9458660 - 9458732
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaat 161  Q
    |||||| |||| ||||| ||||| ||||||||  ||||||||||||||| |||  ||||||| ||||||||||    
T  9458660 ggtaggatttgggtatgagttcgaggtgggtacatatatccccgttatctgtcccgtacccgtattttgaaat 9458732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 32959869 - 32959957
Alignment:
Q  101 gtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaaacg 189  Q
    ||||||||||||||||| ||  ||||||||||||| ||||   |||||||  |||||||||  || |||| ||||||||| ||||||||    
T  32959869 gtatgggttcggggtggatacctatatccccgttacccgttccgtacccgtgttttgaaattagggaaaacccaaacccaatcaaaacg 32959957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 5863470 - 5863383
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| ||||||||||| ||||||||  ||||| ||||||| |||||   ||||||  ||||||||||||| |||| ||| |||||    
T  5863470 gggtttgggtatgggttcgaggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccataccca 5863383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 32853845 - 32853932
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| ||||||||||||||||||||  ||||| ||||||| |||||   ||||||  |||||| |||||| |||| ||| |||||    
T  32853845 gggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccataccca 32853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 256588 - 256502
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||| ||| ||| |||||| ||||||   ||||||||||||| ||||    
T  256588 atttaggaggggtttgggtatgggtttggggtgggtacctatatgcccattacccgtctcgtacccatgttttgaaatcggggaaaa 256502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 70087 - 70180
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    |||| ||||||||||| ||||||||| ||||||||||  ||||||| ||||| |||||  ||||||| ||| ||||||| ||||||||||||||    
T  70087 atttgggtagggtttgggtatgggtttggggtgggtacatatatcctcgttacccgtcccgtacccgtattatgaaatcaggaaaaatccaaac 70180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 84 - 180
Target Start/End: Complemental strand, 105565 - 105469
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    |||| ||||||||||| ||||||||||||||||||||  |||||||| |||| |||||  ||||||| |||  |||||||| |||||||||| ||||    
T  105565 atttgggtagggtttgggtatgggttcggggtgggtacatatatccctgttacccgtcccgtacccgtattaagaaatcggaaaaaatccaatccca 105469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 128217 - 128124
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    |||| ||||||||||| ||||||||||||||||||||  ||||||||| ||| |||||  ||||||| ||| |||||| || ||||| ||||||    
T  128217 atttgggtagggtttgggtatgggttcggggtgggtacatatatccccattacccgtcccgtacccgtattatgaaattggaaaaaacccaaac 128124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 20826 - 20733
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaacccagtcaaa 186  Q
    ||||||| ||||||||||| ||||| || |||||||||| ||| ||||||  ||| ||  ||||||||||||||||||||||||| | ||||||    
T  20826 gggtttgagtatgggttcgaggtggatatttatatccccattacccgtctcatactcgagttttgaaatcgggaaaaatccaaactctgtcaaa 20733  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 33396 - 33481
Alignment:
Q  95 gtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||| ||||||||||||||||||||  ||||| ||||||| |||||   ||||||  ||||||||||||| |||| |||||||||    
T  33396 gtttgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaaccca 33481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 44172627 - 44172714
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| |||||||||||||||||||| |||||| ||||||| |||||   ||||||  |||||| |||||| |||| ||| |||||    
T  44172627 gggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccataccca 44172714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 44179327 - 44179414
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| |||||||||||||||||||| |||||| ||||||| |||||   ||||||  |||||| |||||| |||| ||| |||||    
T  44179327 gggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccataccca 44179414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 34119660 - 34119734
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    |||| ||||||||||||||||||||  ||||| || |||||||||||  ||||||  |||| |||||||||||||    
T  34119660 tttgggtatgggttcggggtgggtacctatatacctgttatccgtctcatacccgtgttttaaaatcgggaaaaa 34119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 4016129 - 4016044
Alignment:
Q  95 gtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||| |||||||||||| |||||||  ||||| |||||||||||||   |||||   ||||||||||||| |||| |||||||||    
T  4016129 gtttgggtatgggttcggagtgggtacctatatacccgttatccgtcccatacccatgttttgaaatcggggaaaacccaaaccca 4016044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 19111735 - 19111812
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaa 170  Q
    ||||||| | |||||||  ||||||||| |||||| |||||||||| ||  |||||||  ||||||||||||||||||    
T  19111735 gggtttgggcatgggtttagggtgggtacttatatacccgttatccatcccgtacccgtgttttgaaatcgggaaaaa 19111812  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 2487787 - 2487823
Alignment:
Q  84 atttaggtagggtttgtgtatgggttcggggtgggta 120  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2487787 atttaggtagggtttgggtatgggttcggggtgggta 2487823  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 7469865 - 7469817
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtc 141  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| |||||    
T  7469865 gggtttgtgtatgggttcggggtgggtacctatatacccgttacccgtc 7469817  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 52198156 - 52198243
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||| ||||||||||||||||||||  ||||| ||||||| |||||   |||| |  |||||| ||||||||||| ||| |||||    
T  52198156 gggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacctgtgttttgagatcgggaaaaacccataccca 52198243  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 1772490 - 1772416
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcg 163  Q
    ||||||||||||||||| ||||||||||||||  ||||||| | |||  || | |||||||| ||||| ||||||    
T  1772490 ggtagggtttgtgtatgagttcggggtgggtacatatatccgcattactcgccctgtacccgtattttaaaatcg 1772416  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 39728672 - 39728714
Alignment:
Q  93 gggtttgtgtatgggttcggggtgggtaattatatccccgtta 135  Q
    ||||||| |||||||||||||||||||| |||||| |||||||    
T  39728672 gggtttgggtatgggttcggggtgggtacttatatacccgtta 39728714  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 30904899 - 30904819
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaac 177  Q
    |||| ||||||||||||||||||||  |||||||||| || |||||  |||||||  |||||||||| | ||||| ||||||    
T  30904899 tttgggtatgggttcggggtgggtacctatatccccg-tacccgtcccgtacccgtgttttgaaatcagaaaaaagccaaac 30904819  T

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Target: scaffold0542 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 11279 - 11246
Alignment:
Q  417 gtagatttaaatgtaatgttgatgcatcattctc 450  Q
    ||||||||||||||||||||||||||||||||||    
T  11279 gtagatttaaatgtaatgttgatgcatcattctc 11246  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 90601 - 90685
Alignment:
Q  96 tttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaaccca 180  Q
    ||||||||||||||||||| |||||   |||| ||||||| ||||||  ||||||  ||||||||||||| |||| ||| |||||    
T  90601 tttgtgtatgggttcggggagggtaccaatatacccgttaaccgtctcatacccgtgttttgaaatcggggaaaacccataccca 90685  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 55988 - 55902
Alignment:
Q  89 ggtagggtttgtgtatgggttcggggtgggtaattatatccccgttatccgtcttgtacccgcattttgaaatcgggaaaaatccaaa 176  Q
    ||||||||||| |||||| |||||||||||||  |||||||| |||| || || |||||||  |||||||||| ||| |||| |||||    
T  55988 ggtagggtttgggtatggattcggggtgggtacatatatccctgtta-ccctcctgtacccatattttgaaattggggaaaacccaaa 55902  T

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