View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4374-Insertion-5 (Length: 644)
Name: NF4374-Insertion-5
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4374-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 644
Target Start/End: Complemental strand, 7665797 - 7665160
Alignment:
| Q |
8 |
actgtattattgaggcattgttgtacaatagtttgtaagtgatcattctttgcaagttcagctttcaattgcttcagaaatgagttctcaactgatgacc |
107 |
Q |
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| T |
7665797 |
actgtattattgaggcattgttgtacaatagtttgtaagtgatcattctttgcaagttcagctttcaattgcttcagaaatgagttctcaactgatgacc |
7665698 |
T |
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| Q |
108 |
acgataatgccatgactctggaaagagcatcagcagccacattctcc-ttccctggcttgtactcaatatgaaaatcagaaccaatgaacttatgcaacc |
206 |
Q |
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| T |
7665697 |
acgataatgccatgactctggaaagagcatcagcagccacattctcccttccctggcttgtactcaatatgaaaatcataaccaatgaacttatgcaacc |
7665598 |
T |
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| Q |
207 |
aagcttgttgctttggagtttataaggattgatccaacaggctttttaaactcttctgatccgttcttattataaatttgtggcctagcaaatagtggcg |
306 |
Q |
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| T |
7665597 |
aagcttgttgctttggagtttataaggattgatccaacaggctttttaaactcttctgatccgttcttattataaatttgtggcctagcaaatagtggcg |
7665498 |
T |
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| Q |
307 |
aaattttgctaaggctacagttatagcatagaactatctaatataagtagactggagttgcattctaggtaccatctttatagaaaagaatgttataggg |
406 |
Q |
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| T |
7665497 |
aaattttgctaaggctgcagttatagcatagaactatctaatataagcagactggagttgcattctaggtaccatctttatagaaaagaatgttataggg |
7665398 |
T |
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| Q |
407 |
tgacccccttgactcaacaccacccccacaccagtccccgaggcatctgtttctaacacgaatggtagtgaaaaatcaggaagattaagtacaggggttg |
506 |
Q |
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| T |
7665397 |
tgacccccttgactcaacaccacccccacaccagtccccgaggcatctgtttctaacacgaatggtagtgaaaaatcaggaagattaagtacaggggttg |
7665298 |
T |
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| Q |
507 |
tagttaagacttaagacatgcttcaatttaacaaaagttgtttgagcatcttcagtccatgcaaatgcctctttcttcaatagactagtcaatagaagag |
606 |
Q |
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| T |
7665297 |
tagttaagacttaggacctgcttcaatttatcaaaagctgtttgagcatcttcagtccatgcaaatgcctctttcttcaatagattagtcaatagaagag |
7665198 |
T |
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| Q |
607 |
aatgatgaaatcacaacatattgcacaccactatttga |
644 |
Q |
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| T |
7665197 |
aatgatgaaatcacaacatattgcacaccactatttga |
7665160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 10995686 - 10995617
Alignment:
| Q |
158 |
cctggcttgtactcaatatgaaaatcagaaccaatgaacttatgcaaccaagcttgttgctttggagttt |
227 |
Q |
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| T |
10995686 |
cctggcttgtattcaatatgaaaatcaaagccaataaacttgtgtaaccatgcttgttgttctggagttt |
10995617 |
T |
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