View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4374-Insertion-6 (Length: 491)

Name: NF4374-Insertion-6
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4374-Insertion-6
NF4374-Insertion-6
[»] chr6 (9 HSPs)
chr6 (201-491)||(11737089-11737379)
chr6 (217-491)||(11758524-11758798)
chr6 (217-491)||(12090628-12090902)
chr6 (11-202)||(11736874-11737061)
chr6 (294-488)||(11629526-11629720)
chr6 (294-484)||(11671437-11671627)
chr6 (218-488)||(11707729-11707999)
chr6 (294-488)||(11620692-11620886)
chr6 (294-477)||(11665546-11665729)
[»] scaffold0196 (1 HSPs)
scaffold0196 (296-488)||(15203-15395)
[»] chr1 (1 HSPs)
chr1 (256-488)||(44813975-44814207)
[»] chr8 (1 HSPs)
chr8 (218-488)||(16390918-16391188)
[»] scaffold0019 (1 HSPs)
scaffold0019 (296-484)||(6034-6222)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 201 - 491
Target Start/End: Original strand, 11737089 - 11737379
Alignment:
Q  201 ttgtttgaatgttaatgtctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11737089 ttgtttgaatgttaatgtctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccgcagaagcaagaacaactgcatacgctgtttct 11737188  T
Q  301 acccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11737189 acccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttctt 11737288  T
Q  401 cctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatccgcataag 491  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11737289 cctcgaaagcccttattgtaatagctccagcaacactttcagctacatgattagctatagatgattttgttgtgccattcatccgcataag 11737379  T

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Target: chr6; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 217 - 491
Target Start/End: Complemental strand, 11758798 - 11758524
Alignment:
Q  217 gtctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaacc 316  Q
    ||||||||||||| ||||||  | || ||||||||||||||  ||| |||  |||| |||||||||| |||||||||||||||||| |||||||||||||    
T  11758798 gtctcaccagatgataaagtgtctaatggaagcatagcaatagaaaatgctgcagaggcaagaacaattgcatacgctgtttctactcgttggatcaacc 11758699  T
Q  317 actcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttat 416  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  11758698 actcatttgaggaaaaactgtggaagaaagcactagcattgacatcaattaaatcaagattcttgttgaaaaaacggtcttcttcctcaaaagcccttat 11758599  T
Q  417 tgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatccgcataag 491  Q
    ||| || ||||||||| || ||||||||||||||||||||| ||  ||||| || ||||||||||||||||||||    
T  11758598 tgtcattgctccagcagtagtttcagctacatgattagctacagcggatttagtcgtgccattcatccgcataag 11758524  T

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Target: chr6; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 217 - 491
Target Start/End: Original strand, 12090628 - 12090902
Alignment:
Q  217 gtctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaacc 316  Q
    ||||||||||||| ||||||||| || ||||||||||| ||| | |||||  |||| ||||||||||| || ||||||||||||||||||||||||| ||    
T  12090628 gtctcaccagatgataaagtccctaatggaagcatagcgatggatagtgctgcagaggcaagaacaacggcgtacgctgtttctacccgttggatcagcc 12090727  T
Q  317 actcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttat 416  Q
    | |||||||| |||||||| |||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  12090728 attcatttgaggcaaaactatggaagaaagcagtagcattgacatcaattaaatcaagattcttgttgaaaaaccgatcttcttcctcaaaagctcttat 12090827  T
Q  417 tgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatccgcataag 491  Q
    ||| ||||||||||||| | ||||||||||||||||||| |  || |||||||||||||||||||||||||||||    
T  12090828 tgtcatagctccagcaacagtttcagctacatgattagcaacggacgattttgttgtgccattcatccgcataag 12090902  T

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Target: chr6; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 11736874 - 11737061
Alignment:
Q  11 accataccgatgaatcctgaaaaggtgaaggttggaaataagaaacttgcataagagagataatcctattgtttgaagataaaatcatactgttttttgt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11736874 accataccgatgaatcctgaaaaggtgaaggttggaaataagaaacttgcataagagagataatcccattgtttgaagataaaatcatactgttttttgt 11736973  T
Q  111 accnnnnnnnngtcatattattttcatgatcatatatcaaccaatatacgttgtttgaatcttaaggtataaatatgtatttagtcaatgtt 202  Q
    |||        ||||||||||||||||||||||||||||| |    || ||||||| |||||||||||||||||||||||||||||| ||||    
T  11736974 accaaaaaaaagtcatattattttcatgatcatatatcaaac----tatgttgttttaatcttaaggtataaatatgtatttagtcagtgtt 11737061  T

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Target: chr6; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 294 - 488
Target Start/End: Original strand, 11629526 - 11629720
Alignment:
Q  294 tgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacga 393  Q
    |||||||| ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||   |||||||| || ||| ||||| |  ||| |||||    
T  11629526 tgtttctaaccgttggatcaaccactcattcgaggcaaaactatggaaaaaagcacttgcattattatcaattagatcaaggttcttctcaaaagaacga 11629625  T
Q  394 tcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatccgcat 488  Q
    ||||| ||||| |||||||| |||||   |||||| |||| | |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  11629626 tcttcctcctcaaaagccctaattgttgcagctccggcaacagtttcagctacatgattagctaatgatgattttgttgtgccattcatccgcat 11629720  T

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Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 294 - 484
Target Start/End: Original strand, 11671437 - 11671627
Alignment:
Q  294 tgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacga 393  Q
    |||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| | |||||||| |  ||| ||||| |  ||| || ||    
T  11671437 tgtttctaaccgttggatcaaccactcatttgaagcaaaactatggaaaaaagcactagcatttaaatcaattagacaaaggttcttctcaaaagaatga 11671536  T
Q  394 tcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatcc 484  Q
     | || ||||  |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  11671537 gcctcctccttaaaagcccttattgtcatagctccagcaacagtttcagctacatgattagctatagaggattttgttgtgccatttatcc 11671627  T

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Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 488
Target Start/End: Original strand, 11707729 - 11707999
Alignment:
Q  218 tctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaacca 317  Q
    |||||||||| || ||||||||  | ||||| ||| | |||||||||||  |||| ||||||||| |||||     |||||||| |||||||||||||||    
T  11707729 tctcaccagaggtgaaagtccctgatggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcaccaattgtttctaaccgttggatcaacca 11707828  T
Q  318 ctcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttatt 417  Q
    ||| ||||| |||||| | || || || ||||| ||||| |  ||||||| || ||||||||| |  || ||||||||||| ||||| ||||||||||||    
T  11707829 ctcgtttgaggcaaaattatgaaaaaatgcactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagcccttatt 11707928  T
Q  418 gtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatccgcat 488  Q
    || |  ||||| |||| | ||||||||||||||||||||| | | ||||| ||||||||| | ||||||||    
T  11707929 gtcactgctccggcaacagtttcagctacatgattagctagaaaggatttcgttgtgccacttatccgcat 11707999  T

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Target: chr6; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 294 - 488
Target Start/End: Complemental strand, 11620886 - 11620692
Alignment:
Q  294 tgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacga 393  Q
    ||||||||  |||||||||||||| || ||||| |||||||| || || |||||||| |||||   |||||||| || ||| ||||| |  ||| |||||    
T  11620886 tgtttctaatcgttggatcaaccattcgtttgaggcaaaactatgaaaaaaagcacttgcattattatcaattagatcaaggttcttctcaaaagaacga 11620787  T
Q  394 tcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatccgcat 488  Q
    |||||  |||| |||||||||||||| | ||||||||||| | |||| ||||||||||| |||| ||| ||||||||||||||||||| ||||||    
T  11620786 tcttccccctcaaaagcccttattgttacagctccagcaacagtttcggctacatgattcgctaaagaggattttgttgtgccattcaaccgcat 11620692  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 294 - 477
Target Start/End: Complemental strand, 11665729 - 11665546
Alignment:
Q  294 tgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacga 393  Q
    |||||||| |||| ||||||||||||||||||| |||||| | || || || ||||| ||||| |  || |||| || ||||||||| |  ||||| |||    
T  11665729 tgtttctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcga 11665630  T
Q  394 tcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgcca 477  Q
    ||||| ||||| ||||| |||||||| |  ||||| |||| | ||||||||||||||||||||| | | ||||| |||||||||    
T  11665629 tcttcctcctcaaaagctcttattgtcactgctccggcaacagtttcagctacatgattagctacataggatttcgttgtgcca 11665546  T

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Target: scaffold0196 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 296 - 488
Target Start/End: Complemental strand, 15395 - 15203
Alignment:
Q  296 tttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatc 395  Q
    |||||| |||||||||||||||||||||||| |||| | | ||||| |||| ||| ||||| |||||||||| || ||| ||||| |  ||| |||||||    
T  15395 tttctaaccgttggatcaaccactcatttgaggcaataatatggaaaaaagaactagcattaacatcaattagataaaggttcttctcaaaagaacgatc 15296  T
Q  396 ttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatccgcat 488  Q
    ||| ||||| ||||||||||||||   |||||| ||||   |||||||||||||||||||||  || ||||||||||| ||||| ||||||||    
T  15295 ttcatcctcaaaagcccttattgttgcagctcccgcaactgtttcagctacatgattagctaatgacgattttgttgtaccatttatccgcat 15203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 488
Target Start/End: Complemental strand, 44814207 - 44813975
Alignment:
Q  256 atgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcat 355  Q
    |||||||||||  | || |||||||||||||||    ||||||||| |||||| |||||||||||||| |  |||||||| || ||||||| | | ||||    
T  44814207 atgcaaagtgcagctgatgcaagaacaactgcactaactgtttctaaccgttgaatcaaccactcattagcggcaaaactatgaaagaaaggagtagcat 44814108  T
Q  356 tgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagc 455  Q
    ||| ||||||||||  |||||||||    ||||||||| |||| |  || |||||||||||||| |  || ||||||| |  |||||| | ||| |||||    
T  44814107 tgatatcaattaaaccaagattctttacaaaaaaacgaccttcctgttcaaaagcccttattgtcacggcaccagcaacagattcagcaagatggttagc 44814008  T
Q  456 tatagatgattttgttgtgccattcatccgcat 488  Q
    || | | ||||||||||||||||||||||||||    
T  44814007 tacaaaggattttgttgtgccattcatccgcat 44813975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 218 - 488
Target Start/End: Original strand, 16390918 - 16391188
Alignment:
Q  218 tctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaacca 317  Q
    |||||||||| || ||||||||    ||||| ||| | |||||||||||  |||| ||||||||| |||||     |||||||| |||||||||||||||    
T  16390918 tctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccgttggatcaacca 16391017  T
Q  318 ctcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttatt 417  Q
    ||| ||||| |||||| | || || || | ||| ||||| |  ||||||| || ||||||||| |  || ||||||||||| ||||| ||||  ||||||    
T  16391018 ctcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagttcttatt 16391117  T
Q  418 gtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatccgcat 488  Q
    || |  ||||||| || | |||||||||||||||| |||| | | ||||||||||||||| | ||||||||    
T  16391118 gtcactgctccagaaacagtttcagctacatgatttgctacataggattttgttgtgccagttatccgcat 16391188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 484
Target Start/End: Original strand, 6034 - 6222
Alignment:
Q  296 tttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatc 395  Q
    |||||| |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||| | ||||||||  | ||| || || |  ||||||| |||    
T  6034 tttctaaccgttggatcaaccactcttttgaggaaaaactatggaaaaaagcactagcatttatatcaattaggtcaaggtttttctcaaaaaaacaatc 6133  T
Q  396 ttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctatagatgattttgttgtgccattcatcc 484  Q
    ||| ||||| ||||||||||| ||   ||||||||||| | |||||  ||||||||||||||  || || ||||| |||||||||||||    
T  6134 ttcctcctcaaaagcccttatagttgcagctccagcaacagtttcatttacatgattagctaatgacgactttgtggtgccattcatcc 6222  T

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