View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4374-Insertion-7 (Length: 477)
Name: NF4374-Insertion-7
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4374-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 477
Target Start/End: Original strand, 52495695 - 52496164
Alignment:
| Q |
7 |
atcataggcatagcaacactgcacatagctgatcctttcacacaaaccattttatccattcaaacctacacaatttgaaattagttattaaaccaatgtt |
106 |
Q |
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| T |
52495695 |
atcataggcatagcaacactgcacatagctgatcctttcacacaaaccattttatccattcaaacctacacaatttgaaattagttattaaaccaatgtt |
52495794 |
T |
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| Q |
107 |
tcgaacataaaaattgaattaattaaggattaaaaccgtacctagtaagatgaatcaccgatctcgttttaataaaatttaactattggtacataataat |
206 |
Q |
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| T |
52495795 |
tcgaacataaaaattgaattaattaagaattaaaaccgcacctagtaagatgaatcaccgatctcgttttaataaaatttaactattggtacataataat |
52495894 |
T |
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| Q |
207 |
aagaatggatagtgttgaagttgaaatagagaaaattaagatctgaaaatgaagagaggaaaggagggaatgagaaagaggataagagattctttctttg |
306 |
Q |
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| T |
52495895 |
aagaatggatagtgttgaagttgaaatagagaaaattaagatctgaaaatgaagagaggaaaggagggaatgagaaagaggataagagattctttctttg |
52495994 |
T |
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| Q |
307 |
tttgtgtaaagctaactaaaataataaatagaacgaactagaagtgttatcaaagatannnnnnnaaagtttaggaaagtatcaaccgttcttccatcgc |
406 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
52495995 |
tttgtgtaaagctaact-aaataataaatagaacgaactagaagtgttatcaaagatatttttttaaagtttaggaaagtatcaaccgttcttccaccgc |
52496093 |
T |
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| Q |
407 |
aagcatcatcttcaattagatagatagaccataaaatgaaatcactcttttacccctatgttttttagttc |
477 |
Q |
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| T |
52496094 |
aagcatcatcttcaattagatagatagaccataaaatgaaatcactcttttacccctatgttttttagttc |
52496164 |
T |
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