View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4374_high_5 (Length: 343)
Name: NF4374_high_5
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4374_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 39941462 - 39941793
Alignment:
| Q |
1 |
aagacaaccgtgaaactcgagaaacggcgtttcattcgccgcgggaatcttcttcactcaatctcagtcatgaagaaagctattacactccggtttcgcg |
100 |
Q |
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| T |
39941462 |
aagacaaccgtgaaactcgagaaacggcgtttcattcgccgcgggaatcttcttcactcaatctcagtcatgaagaaagctattacactccggtttcgcg |
39941561 |
T |
|
| Q |
101 |
tcgaagtcacggaagccctaccgcgccggtaactgcgactccggtggttccgtattcgaagagaacttcaccgaaatctcggttatcaggttcgtcgccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39941562 |
tcgaagtcacggaagccctaccgcgccggtaactgcaactccggtggttccgtattcgaagagaacttcaccgaaatctcgattatcaggttcgtcgccg |
39941661 |
T |
|
| Q |
201 |
gagatgaaacgcgtcatgataccgtctataaagcatgctccggcgtctccgtcaacactttttcagcacggttctcctagaaggccaaaattctcatcgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39941662 |
gagatgaaacgcgtcatgataccgtctataaagcatgctccggcgtcgccgtcaacactttttcagcacggttctcctagaaggccgaaattctcatcgc |
39941761 |
T |
|
| Q |
301 |
cgccaccggcgccgaatttgacgcatcttcat |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
39941762 |
cgccaccggcgccgaatttgacgcatcttcat |
39941793 |
T |
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