View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4374_high_7 (Length: 332)
Name: NF4374_high_7
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4374_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 5810932 - 5810611
Alignment:
| Q |
1 |
agaaaatggtcatagaacacaataaatacgtgggtgaatatgagaaaaaattccaaaattttgaagnnnnnnnn-ttaactattaatatgcatattatta |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5810932 |
agaaaatggtcatagaacacaataaatacgtgggtgaatatgagaaaaa-ttccaaaattttgaagaaaaaaaaattaactattaatatgcatattatta |
5810834 |
T |
|
| Q |
100 |
tgccgcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaagg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5810833 |
tgccgcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaagg |
5810734 |
T |
|
| Q |
200 |
atcattctccatcagtcgattagaggtttctgaagtaaattggaatgctctcgataattgggatcaatttgatgatggatacaatgtggcacaatgcata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
5810733 |
atcattctccatcagtcgattagaggtttctgaagtaaattggaatgctcttgacaattgggatcattttaatgatggatacaatgtggcacaatgcata |
5810634 |
T |
|
| Q |
300 |
agggctgtggctgaacctttgct |
322 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
5810633 |
agggctgtggctgaacctttgct |
5810611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 27736168 - 27736007
Alignment:
| Q |
98 |
tatgccgcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaa |
197 |
Q |
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||||| ||||||||||||| || |||||||| |||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||| |
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| T |
27736168 |
tatgctgcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaa |
27736069 |
T |
|
| Q |
198 |
ggatcattctccatcagtcgattagaggtttctgaagtaaattggaatgctctcgataattg |
259 |
Q |
| |
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|||||||| ||||| | ||| |||||||||||||| |||||||||||||| ||| |||| |
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|
| T |
27736068 |
ggatcatttgtcatcaataaattggaggtttctgaagttaattggaatgctcttgatgattg |
27736007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 27735963 - 27735911
Alignment:
| Q |
270 |
gatgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgct |
322 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
27735963 |
gatgatggatacaatatggcacaatgcattagggctgtggctgaacctttgct |
27735911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 322
Target Start/End: Complemental strand, 32627116 - 32626906
Alignment:
| Q |
121 |
aagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaaggatcattctccatcagtcgatt |
220 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||||||||||||||||||| || | ||||||||| | |||||||||||||| ||| | || | | |
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|
| T |
32627116 |
aagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcatttgtcatgaatcaact |
32627017 |
T |
|
| Q |
221 |
agaggtttctgaagtaaattggaatgctctcgataattggga---tcaat--tt----gatgatggatacaatgtggcacaatgcataagggctgtggct |
311 |
Q |
| |
|
||| | |||||||| ||||||||||||| ||| ||| || | ||| || ||||||||||||||||||||||||||||| || ||| ||||| |
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|
| T |
32627016 |
cgagatatctgaagtgaattggaatgctcgtgatgattttgaatctgaatcattcggagatgatggatacaatgtggcacaatgcatgagagctttggct |
32626917 |
T |
|
| Q |
312 |
gaacctttgct |
322 |
Q |
| |
|
||||||||||| |
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|
| T |
32626916 |
gaacctttgct |
32626906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 32702743 - 32702691
Alignment:
| Q |
268 |
ttgatgatggatacaatgtggcacaatgcataagggctgtggctgaacctttg |
320 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32702743 |
ttgataatggatacgatgtggcacaatgcataagggctgtggctgaacctttg |
32702691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 32708779 - 32708666
Alignment:
| Q |
137 |
tttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaaggatcattctccatcagtcgattagaggtttctgaagta |
236 |
Q |
| |
|
||||||||||||| | || |||||||||||| || || | ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||| |
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|
| T |
32708779 |
tttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtg |
32708680 |
T |
|
| Q |
237 |
aattggaatgctct |
250 |
Q |
| |
|
|||||||||||||| |
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|
| T |
32708679 |
aattggaatgctct |
32708666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 7297212 - 7297160
Alignment:
| Q |
153 |
tattatccatctccatctgaggttgagttggaagttctcactgaaggatcatt |
205 |
Q |
| |
|
||||||||||| |||| ||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
7297212 |
tattatccatcaccatatgaagttgagttagaagttctcaatgaaggatcatt |
7297160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 20117882 - 20117983
Alignment:
| Q |
104 |
gcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaaggatca |
203 |
Q |
| |
|
|||||||||||| || |||||| ||||||| |||||| ||||||||||||||||||||||| |||| || | ||||||||||| |||||||| ||| |
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|
| T |
20117882 |
gcagggaatcatagaagaagagaccctcaatactttcaatctccctaactattatccatctccaactgaagtgaaattggaagttctaactgaagggtca |
20117981 |
T |
|
| Q |
204 |
tt |
205 |
Q |
| |
|
|| |
|
|
| T |
20117982 |
tt |
20117983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 21941968 - 21941867
Alignment:
| Q |
104 |
gcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaaggatca |
203 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| | | |||||||||| ||||||| |||| |
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|
| T |
21941968 |
gcagggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatca |
21941869 |
T |
|
| Q |
204 |
tt |
205 |
Q |
| |
|
|| |
|
|
| T |
21941868 |
tt |
21941867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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