View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4374_high_8 (Length: 330)
Name: NF4374_high_8
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4374_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 2 - 313
Target Start/End: Complemental strand, 52495700 - 52495389
Alignment:
| Q |
2 |
tatgattggaccaatcaacgctggttgtagtagaattgaattgtggggattcagtgctagtaacaaaatcaagcctaattccctttcttgccatgtaaat |
101 |
Q |
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| T |
52495700 |
tatgattggaccaatcaacgctggctgtagtagaattgaattgtggggattcagtgctagtaacaaaatcaagcctaattccctttcttgccatgtaaat |
52495601 |
T |
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| Q |
102 |
atgagaaagtgcagaactgtgatgaattgcagtttcaactcatcttcaaatggtagtggaagtatggctgaaaattttaatgaaaatgatgaagattatg |
201 |
Q |
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| T |
52495600 |
atgagaaagtgcagaactgtgatgaattgcagtttcaactcatcttcaaatggtagtggaagtatggctgaaaattttaatgaaaatgatgaagattatg |
52495501 |
T |
|
| Q |
202 |
ttaattctactattcttgaagcaggtatacacatatatcatatatgcttagtttagttggtgaaaaattgtatttttatatgtttacgctgctagagtta |
301 |
Q |
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| T |
52495500 |
ttaattctactattcttgaagcaggtatacacatatatcatatatgcttagtttagttggtgaaaaattgtatttttatatgtttatgctgctagagtta |
52495401 |
T |
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| Q |
302 |
gtaattggtgtg |
313 |
Q |
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| T |
52495400 |
gtaattggtgtg |
52495389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 7217562 - 7217515
Alignment:
| Q |
157 |
gtggaagtatggctgaaaattttaatgaaaatgatgaagattatgtta |
204 |
Q |
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| T |
7217562 |
gtggaagtatggcagaaagtttcaatgaaaaagatgaagattatgtta |
7217515 |
T |
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