View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4374_low_1 (Length: 344)
Name: NF4374_low_1
Description: NF4374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4374_low_1 |
 | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 16872689 - 16873005
Alignment:
| Q |
13 |
aatatgacagcattgaagatattatcgatgttgatccatctatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttaggggaagga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16872689 |
aatatgacagcattgaagatattatcgatgctgatccatcgatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttaggggaagga |
16872788 |
T |
|
| Q |
113 |
agaaaactgaaaggtttgaacaagttgatcacatcttacctaccaatcaaaattggctgaaaacacctgcacaagagctgcaaattctttttagtgtggt |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16872789 |
agaaaattgaaaggtttgaacaagttgatcacatcttacctaccaatcaaaattggctgaaaacacctgcacaagagcttcaaattctttttagtgtggt |
16872888 |
T |
|
| Q |
213 |
ttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattctcgatatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16872889 |
ttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattctcgatatt |
16872988 |
T |
|
| Q |
313 |
cttgtgcaatatccaaa |
329 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
16872989 |
cttgtgcaatatccaaa |
16873005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 16579365 - 16579686
Alignment:
| Q |
8 |
cgaataatatgacagcattgaagatattatcgatgttgatccatctatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttagggg |
107 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16579365 |
cgaagaatatgacagcattgatgatattatcgatgctcatccatcgatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttagggg |
16579464 |
T |
|
| Q |
108 |
aaggaagaaaactgaaaggtttgaacaagttgatcacatcttacctaccaatcaaaattggctgaaaacacctgcacaagagctgcaaattctttttagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16579465 |
aaggaagaaaactgaaaggtttgaacaagttgatcacatcttacctaccaatcaaaattggctgaaaacacctgcacaagagctgcaaattctttttagt |
16579564 |
T |
|
| Q |
208 |
gtggtttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattctcg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16579565 |
gtggtttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcataatatgttggtcattctcg |
16579664 |
T |
|
| Q |
308 |
atattcttgtgcaatatccaaa |
329 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
16579665 |
atattcttgtgcagtatccaaa |
16579686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 16616015 - 16615694
Alignment:
| Q |
8 |
cgaataatatgacagcattgaagatattatcgatgttgatccatctatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttagggg |
107 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16616015 |
cgaagaatatgacagcattgatgatattatcgatgctcatccatcgatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttagggg |
16615916 |
T |
|
| Q |
108 |
aaggaagaaaactgaaaggtttgaacaagttgatcacatcttacctaccaatcaaaattggctgaaaacacctgcacaagagctgcaaattctttttagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16615915 |
aaggaagaaaactgaaaggtttgaacaagttgatcacatcttacctaccaatcaaaattggctgaaaacacctgcacaagagctgcaaattctttttagt |
16615816 |
T |
|
| Q |
208 |
gtggtttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattctcg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16615815 |
gtggtttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcataatatgttggtcattctcg |
16615716 |
T |
|
| Q |
308 |
atattcttgtgcaatatccaaa |
329 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
16615715 |
atattcttgtgcagtatccaaa |
16615694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 16570796 - 16570976
Alignment:
| Q |
33 |
attatcgatgttgatccatctatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttaggggaaggaagaaaactgaaaggtttgaa |
132 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| | | |||||||||||||||||| |||||||| | |||| ||||||| ||||||| |||||||||| |
|
|
| T |
16570796 |
attatcgatgctgatccatccatcacatgggacact-tttaacaagaagttcaaagatcttgtggcggctaggagaaggaataaaactggaaggtttgaa |
16570894 |
T |
|
| Q |
133 |
caagttgatcacatcttacctaccaatcaaaattggctgaaaacacctgcacaagagctgcaaattctttttagtgtggtttctgc |
218 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||| | || ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
16570895 |
caagttgaaca---gttacctacctatcaaaattggct-ataatacctgcataaaagctgcaaattctttttagtgtggtttctgc |
16570976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 219 - 314
Target Start/End: Original strand, 16571001 - 16571094
Alignment:
| Q |
219 |
tcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattctcgatattct |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16571001 |
tcagtttgatgttaattcaagcctcgttggtgggcatgtgcttata--tgtgtggaaaaaatgtgtgcagaatattttggtcattctcgatattct |
16571094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 17040440 - 17040306
Alignment:
| Q |
33 |
attatcgatgttgatccatctatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttaggggaaggaagaaaactgaaaggtttgaa |
132 |
Q |
| |
|
|||||||||| |||||| || ||||||||| | | |||| ||||||||||||||| ||||||||| | |||||||||||||||| ||| |||| |||| |
|
|
| T |
17040440 |
attatcgatgctgatccgtcgatcacatggcacactgtt-aacaagaagttcaaacagcttgtggcggctaggggaaggaagaaatctggaaggcttgag |
17040342 |
T |
|
| Q |
133 |
caagttgatcacatcttacctaccaatcaaaattggct |
170 |
Q |
| |
|
|||||||| ||| |||||||||| | | ||||||||| |
|
|
| T |
17040341 |
caagttga--acagcttacctacctagctaaattggct |
17040306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 32790838 - 32791146
Alignment:
| Q |
8 |
cgaataatatgacagcattgaagatattatcgatgttgatccatctatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttagggg |
107 |
Q |
| |
|
|||| ||||||| ||| ||| |||||||| |||| ||||||||| ||||||||||| | ||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
32790838 |
cgaagaatatgagagccatgacgatattattgatgctgatccatcgatcacatgggatactgtg-aacaagaagttcaaagagcttgtggcagctagggg |
32790936 |
T |
|
| Q |
108 |
aaggaagaaaactgaaaggtttgaacaagttgatcacatcttacctaccaatcaaaattggctgaaaacacctgcacaagagctgcaaattctttttagt |
207 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| ||| |||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32790937 |
aaggaataaaactggaaggtttgaacaagttga--acagcttacctacctaacaaaattggct-aaaacacctgcacaaaagctgcaaattctttttagt |
32791033 |
T |
|
| Q |
208 |
gtggtttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattctcg |
307 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32791034 |
gtggtttttgctcagtttgatgttaatccaagcctcattggggggcatttgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattcttg |
32791133 |
T |
|
| Q |
308 |
atattcttgtgca |
320 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
32791134 |
atattctggtgca |
32791146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 320
Target Start/End: Complemental strand, 236749 - 236490
Alignment:
| Q |
54 |
atcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttaggggaaggaagaaaactgaaaggtttgaacaagttgatcacatcttacct |
153 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||| | || ||| || ||||| |||||| ||||| |||||||||||| ||||| || ||||| | |
|
|
| T |
236749 |
atcacatgggacactgtt-aacaagaagttcaaagagattctggaagccaggggcaggaagggaactggaaggtttgaacaggttgagcag--cttactt |
236653 |
T |
|
| Q |
154 |
accaatcaaaattggctgaaaacacctgcacaagagctgcaaattctttttagtgtggtttctgctcagtttgatgttaattcaagcctcattggtgggc |
253 |
Q |
| |
|
|| | ||||| | ||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||| || | |||| |||||| |
|
|
| T |
236652 |
tcctaacaaaagttgct-aaaacacctgctcagaagctgcaaattcttttcagtgtggtttctgctcagtttgatgttaatccaggactca---gtgggc |
236557 |
T |
|
| Q |
254 |
atatgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattctcgatattcttgtgca |
320 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||| ||||| ||||| |
|
|
| T |
236556 |
atatgcccataaatgtgtggaaaaagtgtgtgcagaacatgctggtcatcctcgacattctcgtgca |
236490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 172 - 320
Target Start/End: Complemental strand, 48301061 - 48300916
Alignment:
| Q |
172 |
aaaacacctgcacaagagctgcaaattctttttagtgtggtttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgt |
271 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||| |
|
|
| T |
48301061 |
aaaacacctgcacagaagctgcaaattcttttcagtgtggtttctgctcagtttgatgttaatcctggcctca---gtgggcatatgcccataaatgtgt |
48300965 |
T |
|
| Q |
272 |
ggaaaaaatgtgtgcagaatatgttggtcattctcgatattcttgtgca |
320 |
Q |
| |
|
||||||| || |||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
48300964 |
ggaaaaagtgcgtgcagaatatgctggtcattcttgatattctcgtgca |
48300916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 320
Target Start/End: Original strand, 7389072 - 7389315
Alignment:
| Q |
71 |
ttaacaagaagttcaaatggcttgtggcagttaggggaaggaagaaaactgaaaggtttgaacaagttgatcacatcttacctaccaatcaaaattggct |
170 |
Q |
| |
|
||||||||||||||||| | || ||| || ||||| |||||| ||||| |||||||||||| ||||| || ||||||| || | ||||| | ||| |
|
|
| T |
7389072 |
ttaacaagaagttcaaagagattctggaagccaggggcaggaagggaactggaaggtttgaacaggttgagcag--cttaccttcctaacaaaagttgct |
7389169 |
T |
|
| Q |
171 |
gaaaacacctgcacaagagctgcaaattctttttagtgtggtttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtg |
270 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||| |||||||| |||| |||| |
|
|
| T |
7389170 |
-aaaacacctgctcagaagctgcaaattcttttcagtgtggtttctgctcagtttgatgttaatccaggcctca---gtggccatatgcccataagtgtg |
7389265 |
T |
|
| Q |
271 |
tggaaaaaatgtgtgcagaatatgttggtcattctcgatattcttgtgca |
320 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||||| ||||| ||||| |
|
|
| T |
7389266 |
tggaaaaagtgtgtgcagaacatgctggtcattctcgacattctcgtgca |
7389315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 15100 - 14981
Alignment:
| Q |
196 |
attctttttagtgtggtttctgctcagtttgatgttaattcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcagaatatgt |
295 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| || |
|
|
| T |
15100 |
attcttttcagagtggtttccgctcagtttgatgttaatccaagcctcattggtgggcatatgcatataaatatgtggaaaaaatttgtgcagaatttga |
15001 |
T |
|
| Q |
296 |
tggtcattctcgatattctt |
315 |
Q |
| |
|
| ||||||||| |||||||| |
|
|
| T |
15000 |
ttgtcattctcaatattctt |
14981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 12692 - 12612
Alignment:
| Q |
234 |
ttcaagcctcattggtgggcatatgcctataaatgtgtggaaaaaatgtgtgcagaatatgttggtcattctcgatattct |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||| |
|
|
| T |
12692 |
ttcaagcctcattggtgggcatatgcttataaatgtgtggaaaaaatgtgagcagaatattttggtaattctagatattct |
12612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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