View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4375-Insertion-1 (Length: 1161)
Name: NF4375-Insertion-1
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 22)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 344 - 808
Target Start/End: Complemental strand, 38301386 - 38300922
Alignment:
| Q |
344 |
ttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataaa |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38301386 |
ttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataaa |
38301287 |
T |
|
| Q |
444 |
ttaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatg |
543 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38301286 |
ttaccattattaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcgtg |
38301187 |
T |
|
| Q |
544 |
agcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattact |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38301186 |
agcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattact |
38301087 |
T |
|
| Q |
644 |
cttccaccactgtaatacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaaca |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38301086 |
cttccaccactgtaatacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcagtaaca |
38300987 |
T |
|
| Q |
744 |
agctgttgatggtgcactttcaattcctattatatttcacacgtgaaaagggaagcaatggggtt |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38300986 |
agctgttgatggtgcactttcaattcctattatatttcacacgtgaaaagggaagcaatggggtt |
38300922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 346 - 808
Target Start/End: Complemental strand, 38310026 - 38309564
Alignment:
| Q |
346 |
ctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataaatt |
445 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||| ||||||||||||| ||||||| |||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
38310026 |
ctccatctacatatcataattgaggaggataataattaaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaattacataaatt |
38309927 |
T |
|
| Q |
446 |
accattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatgag |
545 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||| || | |||| |
|
|
| T |
38309926 |
accattgccaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgtgag |
38309827 |
T |
|
| Q |
546 |
cccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactct |
645 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
38309826 |
cccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattatttctct |
38309727 |
T |
|
| Q |
646 |
tccaccactgtaatacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaag |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
38309726 |
tccaccactgtaatacatccatatcttcataacaatgaaaatccaaatttgactcatctaagtaaacatcaagttgagatttttcagtttcagtaacaag |
38309627 |
T |
|
| Q |
746 |
ctgttgatggtgcactttcaattcctattatatttcacacgtgaaaagggaagcaatggggtt |
808 |
Q |
| |
|
||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
38309626 |
ctgccgttggtgcactttcaattcctattatatctcacacgtgaaaaggaaagcaatgaggtt |
38309564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 38301722 - 38301450
Alignment:
| Q |
8 |
cctttctcatggaattaaatactaatttcatccaacatttagaaagtaaacaaatacacataaaaccaaagttaaaaccatgtctacaagtgcaaaatat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
38301722 |
cctttctcatggaattaaatactaatttcatccaacatttagaaagtaaacaaatacacataaaaccaaagttaaaatcatgtctacaagtacaaaatat |
38301623 |
T |
|
| Q |
108 |
taaaacttaaatccaccagtatgtctagaaaccataacataaccatatatagttctaattttacaatccataaagccaaaagacacattataaaccaaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38301622 |
taaaacttaaatccaccagtatgtctagaaaccatagcataaccatatatagttctaattttacaatccataaagccaaaagacacattataaaccaaag |
38301523 |
T |
|
| Q |
208 |
ttaaatagatacaagcaaatcaatcatcatcaccatcactgaaatcataacaatttgacgagttatccgattc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
38301522 |
ttaaatagatacaagcaaatcaatcatcatcaccatcactgaaatcataaccatttgacgagttatccaattc |
38301450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 351 - 808
Target Start/End: Complemental strand, 38318035 - 38317575
Alignment:
| Q |
351 |
tctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataa---attac |
447 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||| || ||||||||| | |||| |||||||| |||||||||| ||| |||| ||||| |
|
|
| T |
38318035 |
tctacatatcacaattgaagaggttaataataaaattgaccactggttatcagaagaatacaatcatatttatttacatttaaagaacatagtagattac |
38317936 |
T |
|
| Q |
448 |
cattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatgagcc |
547 |
Q |
| |
|
||| | | |||||||||| ||||| |||||||||| |||||||||||||||||| | |||| | ||||||||| ||||||||||||||| | ||| || |
|
|
| T |
38317935 |
catcgcttacaaaattgtataaccaactgcgagtacagattctagtttccacattcgtgggcagcgtacgatcttcatacttgttaaagacacgtgaacc |
38317836 |
T |
|
| Q |
548 |
catgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactcttc |
647 |
Q |
| |
|
||||||||| ||| |||| ||||| || |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
38317835 |
catgcaaaattcagaatcagaagcaacagtggcaatgggaacacttaacaagtcgcaagctaatattgatagatccggaaatcgattattatttctcttc |
38317736 |
T |
|
| Q |
648 |
caccactgtaatacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagct |
747 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||| |
|
|
| T |
38317735 |
caccattgtaatacatccatatcttcataacaatgaaaatccaaatttgactcatctaagtaaacatcaagttgagattttctagtttcagtaacaagct |
38317636 |
T |
|
| Q |
748 |
gttgatggtgcactttcaattcctattatatttcacacgtgaaaagggaagcaatggggtt |
808 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
38317635 |
gccgttggtgcactttcaattcctattatatttcacacgtgaaaaggaaagcaatgaggtt |
38317575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 347 - 792
Target Start/End: Complemental strand, 38307277 - 38306838
Alignment:
| Q |
347 |
tccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataaatta |
446 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||| |||||| |||||||||||||| ||| | |||||||| ||||||||||| || | |||| |
|
|
| T |
38307277 |
tccatctacaaatcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaacagaatcatat------acattcaaattacacagatta |
38307184 |
T |
|
| Q |
447 |
ccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatgagc |
546 |
Q |
| |
|
|||| |||| ||||||| || ||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
38307183 |
ccatcactaacgaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcgtgagc |
38307084 |
T |
|
| Q |
547 |
ccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactctt |
646 |
Q |
| |
|
|||||||||| |||||||| ||||| || |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
38307083 |
ccatgcaaaattcaaaatcagaagccacagtggtaatgggaacacttaacaagtcacaagccagtattgatagatctggatatcgatcattattactctt |
38306984 |
T |
|
| Q |
647 |
ccaccactgtaatacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagc |
746 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||| ||| || ||||||| |||||||| |
|
|
| T |
38306983 |
ccaccattgtaatacatccatatcttcattacaaagaaaacccaaatctgactcatctaagtaaacatcaagttgagacttttcagtttcggtaacaagc |
38306884 |
T |
|
| Q |
747 |
tgttgatggtgcactttcaattcctattatatttcacacgtgaaaa |
792 |
Q |
| |
|
|||||||| | || |||||||||||||| ||||||||| ||||||| |
|
|
| T |
38306883 |
tgttgatgtttcattttcaattcctattgtatttcacaagtgaaaa |
38306838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 344 - 802
Target Start/End: Complemental strand, 38314630 - 38314171
Alignment:
| Q |
344 |
ttctccatctacatatcataattgaagaggtttataattcaattgaacag-tggttatcaaaccaataaaatcatatctatttacattcaaattccataa |
442 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||| | |||| ||| ||||||||||| ||||| | | || | |||| ||||| ||||| ||| |
|
|
| T |
38314630 |
ttctccatctacatatcataatcgaagagattaataactaaattacccaggtggttatcaaaacaatacacttatttatattcacatttaaattagatag |
38314531 |
T |
|
| Q |
443 |
attaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcat |
542 |
Q |
| |
|
|||||||| |||||||||||| || ||| ||||||| || |||||||||||||||| ||| || ||||| ||||||||||||||||| || || | | |
|
|
| T |
38314530 |
attaccatcactaacaaaattgtacagccaactgcgagtgcaaattctagtttccacatccattggtaacatgcgatctttatacttgtttaacacacgt |
38314431 |
T |
|
| Q |
543 |
gagcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattac |
642 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38314430 |
gagcccatgcaaaattcaaaatcagaagccactgtggcaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgatttgaattac |
38314331 |
T |
|
| Q |
643 |
tcttccaccactgtaatacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaac |
742 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | ||| ||||| ||||| |||||| || |||||||||||||||||||| || ||||||| | |||| |
|
|
| T |
38314330 |
tcttccaccattgtaatacatccatatcttcataagaaccaaaattcaaatctgactcgtcaaagtaaacatcaagttcagactttccagttttagtaac |
38314231 |
T |
|
| Q |
743 |
aagctgttgatggtgcactttcaattcctattatatttcacacgtgaaaagggaagcaat |
802 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||| || |||| | ||||||| |
|
|
| T |
38314230 |
aagctgttgatggtgcattttcaattcatattatatttcacaagttaaaaagaaagcaat |
38314171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 344 - 794
Target Start/End: Complemental strand, 38322128 - 38321684
Alignment:
| Q |
344 |
ttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataaa |
443 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| |||||| || ||| | | |||| |||| ||||| |||||||| |||||||| | ||||| | || | |
|
|
| T |
38322128 |
ttctccaactacatatcataattgaaaaggttaataattaaagtgacaactagttaccaaaacaatacaatcatatgtatttacacttaaattacgtaga |
38322029 |
T |
|
| Q |
444 |
ttaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatg |
543 |
Q |
| |
|
||||||| | ||||||||||| |||||| |||||||||| | ||||| |||| ||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
38322028 |
ttaccatcgcgaacaaaattgtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgca |
38321929 |
T |
|
| Q |
544 |
agcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattact |
643 |
Q |
| |
|
|||| |||||||| || ||||| ||||||| ||| ||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38321928 |
agcctatgcaaaaatccaaatcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattact |
38321829 |
T |
|
| Q |
644 |
cttccaccactgtaatacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaaca |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||| ||||| |
|
|
| T |
38321828 |
cttccaccactgtaatacatccatatcttcataacaacgaaaatccaaatttgactcagctaagtaaatatcaagttgggattttccag------taaca |
38321735 |
T |
|
| Q |
744 |
agctgttgatggtgcactttcaattcctattatatttcacacgtgaaaagg |
794 |
Q |
| |
|
||||| | |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
38321734 |
agctgctcatggtgagttttcaattcctattatatttcacaagtgaaaagg |
38321684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 169; E-Value: 5e-90
Query Start/End: Original strand, 349 - 801
Target Start/End: Complemental strand, 38326841 - 38326389
Alignment:
| Q |
349 |
catctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattc------cataa |
442 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||| || | |||||||||||| ||| | | | | || ||| |||||| ||||| ||||| |
|
|
| T |
38326841 |
catctacatatcaaaattgaagaggttaataattaaatagacctgtggttatcaaaacaacacagttacatatatatacattaaaatttaaattacataa |
38326742 |
T |
|
| Q |
443 |
attaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcat |
542 |
Q |
| |
|
| |||||||| | |||||||||| |||||| ||| |||||| ||||| | |||||||||||| |||| |||| | ||||||||||| | ||| |||| | |
|
|
| T |
38326741 |
agtaccattgctgacaaaattgtacaaccaactgcaagtacagattctggcttccacattcataggcagcataaggtctttatacttttcaaatacgcgt |
38326642 |
T |
|
| Q |
543 |
gagcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattac |
642 |
Q |
| |
|
| ||||||||||| || ||||| || ||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
38326641 |
gcacccatgcaaaattccaaatcagatgcgacagtggcaatgggaacacttaacaagtcacaagccaaaattgatagatctggaaatcaattataattac |
38326542 |
T |
|
| Q |
643 |
tcttccaccactgtaatacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaac |
742 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||| |||||||||||||||| |||| ||||| |||||||||||||||| ||| || |||| |||| |
|
|
| T |
38326541 |
tcttccaccattctaatacatccatgtcttcataacaacgaaaatccaaacttgattcatccaagtaaacatcaagttgagactttccag------taac |
38326448 |
T |
|
| Q |
743 |
aagctgttgatggtgcactttcaattcctattatatttcacacgtgaaaagggaagcaa |
801 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
38326447 |
aagttgttgatggtgcattttcaattcctattacatttcacaagtgaaaaggaaagcaa |
38326389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 157; E-Value: 7e-83
Query Start/End: Original strand, 860 - 1123
Target Start/End: Complemental strand, 38300869 - 38300590
Alignment:
| Q |
860 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
959 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38300869 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
38300770 |
T |
|
| Q |
960 |
ttttgctagaatacttgtcaaatagcatgtac-acttgctc-ttacttgttgc-acttcctttcacgtg-tgatgcatc-agttttgagta--cattagc |
1052 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
38300769 |
ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc |
38300670 |
T |
|
| Q |
1053 |
caatg-tgaaagct--atc---tgatcaagaaccgctcc--atgcaagagcaacactatactcat-ccaatatttctcaa |
1123 |
Q |
| |
|
||||| |||||||| ||| | |||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
38300669 |
caatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaa |
38300590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 860 - 1022
Target Start/End: Complemental strand, 38321614 - 38321449
Alignment:
| Q |
860 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
959 |
Q |
| |
|
||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | ||||| | ||| |
|
|
| T |
38321614 |
cttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaatac |
38321515 |
T |
|
| Q |
960 |
ttttgctagaatacttgtcaaatagcatgtac-acttgctc-ttacttgttgc-acttcctttcac |
1022 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||| |||||| |||| |||||||||||| |
|
|
| T |
38321514 |
ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcac |
38321449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 860 - 1020
Target Start/End: Complemental strand, 38309516 - 38309353
Alignment:
| Q |
860 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
959 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||| ||||| ||||| |
|
|
| T |
38309516 |
cttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagtac |
38309417 |
T |
|
| Q |
960 |
ttttgctagaatacttgtcaaatagcatgtac-acttgctc-ttacttgttgc-acttcctttc |
1020 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||| |||||||| ||||||| ||| |||||||||| |
|
|
| T |
38309416 |
ttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttc |
38309353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 860 - 992
Target Start/End: Complemental strand, 38317519 - 38317387
Alignment:
| Q |
860 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
959 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||| |||| ||| ||||||||| |||||||||||||||| || |||||| | || ||||| ||| | |
|
|
| T |
38317519 |
cttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggccagaagaagtgc |
38317420 |
T |
|
| Q |
960 |
ttttgctagaatacttgtcaaatagcatgtaca |
992 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38317419 |
ttttgctagaatacttgtcaaatagcatgtaca |
38317387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 860 - 992
Target Start/End: Complemental strand, 38306766 - 38306634
Alignment:
| Q |
860 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
959 |
Q |
| |
|
||||||||||||||||| | ||||||||| | | |||| ||| ||||||||| ||||||||||| |||| | | || |||||| | ||||| ||||| |
|
|
| T |
38306766 |
cttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtac |
38306667 |
T |
|
| Q |
960 |
ttttgctagaatacttgtcaaatagcatgtaca |
992 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38306666 |
ttttgctagaatacttgtcaaatagcatgtaca |
38306634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 896 - 992
Target Start/End: Complemental strand, 38314072 - 38313976
Alignment:
| Q |
896 |
ttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatacttgtcaaatagcatgtaca |
992 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||| ||| ||| || ||||||| | ||||| ||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
38314072 |
ttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctagaagaagtacttttgctagagtacttggcaaatagcatgtaca |
38313976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 38310322 - 38310135
Alignment:
| Q |
46 |
ttagaaagtaaacaaatacacataaaaccaaagttaaaaccatgtctacaagtgcaaaatattaaaacttaaatccaccagtatgtctagaaaccataac |
145 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||||| || |||||| | | |||||||| |||| ||| ||| |||||| ||| | ||| |||| | |
|
|
| T |
38310322 |
ttagaaaacaaacaaatacacatataacc-aagttaaaaacaagtctaccattacaaaatataaaaatctaagtccgccagtaagtccaaaaaacatagc |
38310224 |
T |
|
| Q |
146 |
---ataaccatatatagttctaattttacaatccataaagccaaaagacacattataaaccaaagttaaatagatacaagcaaatcaat |
231 |
Q |
| |
|
| |||||||||||||| ||||||| ||| |||||||||||||| | |||| | ||| |||||||||||| | ||||| ||||||| |
|
|
| T |
38310223 |
ctaacaaccatatatagttttaattttgcaaaccataaagccaaaacaaacatcacaaaacaaagttaaataaagacaagataatcaat |
38310135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 38323112 - 38323017
Alignment:
| Q |
148 |
aaccatatatagttctaattttacaatccataaa-gccaaaagaca-cattataaaccaaagttaaatagatacaagcaaatcaatcatcatcaccat |
243 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| ||||||| | | ||| ||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
38323112 |
aaccatatatagttataattt--caaaccataaaagccaaaaaaaaacatcataaaccaaagttaagtaaatacaagcaaatcaatcatcatcaccat |
38323017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 875 - 1045
Target Start/End: Complemental strand, 38326349 - 38326174
Alignment:
| Q |
875 |
ccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatact |
974 |
Q |
| |
|
|||| ||||||||| || | |||| ||| |||| |||| | ||||||||| |||| | | ||||||||| || ||||| ||||| || ||||||||||| |
|
|
| T |
38326349 |
ccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaagaagtacgttggctagaatact |
38326250 |
T |
|
| Q |
975 |
tgtcaaatagcatgtac-actt-gctcttacttgttgc-acttcctttcac-gtgtgatgcatc-agttttgagta |
1045 |
Q |
| |
|
|| |||||||||||||| |||| | |||||||||||| |||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
38326249 |
tgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagta |
38326174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 38326999 - 38326929
Alignment:
| Q |
175 |
ccataaagccaaaagacacattataaaccaaagttaaatagatacaagcaaatcaatcatcatcaccatcac |
246 |
Q |
| |
|
|||||||||||||| | ||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
38326999 |
ccataaagccaaaaaat-catcataaactaaagttaaataaatacaagcaaatcaatcatcaccaccatcac |
38326929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 38322355 - 38322225
Alignment:
| Q |
116 |
aaatccaccagtatgtctagaaaccataacataacca---tatatagttctaattttacaatccataaagccaaaag-acacattataaaccaaagttaa |
211 |
Q |
| |
|
||||||||| ||| ||| | |||||||||| |||| | |||||||||| |||||| || ||||||| ||||| | |||| |||||| ||||||| |
|
|
| T |
38322355 |
aaatccaccggtaagtcaacaaaccataacctaacaactttatatagttcaaattttttaaaccataaaaacaaaaacaaacatcataaacagaagttaa |
38322256 |
T |
|
| Q |
212 |
atagatacaagcaaatcaatcatcatcacca |
242 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
38322255 |
atagatacaagcaaatcaaccatcatcacca |
38322225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 38318183 - 38318115
Alignment:
| Q |
177 |
ataaagccaaaagacacattataaaccaaagttaaatagatacaagcaaatcaatcatcatcaccatca |
245 |
Q |
| |
|
|||||| ||||| | |||| ||||| |||||||||||| |||||||||||||||||||| | |||||| |
|
|
| T |
38318183 |
ataaagtcaaaacaaacatgataaatcaaagttaaataactacaagcaaatcaatcatcaccgccatca |
38318115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1072 - 1123
Target Start/End: Complemental strand, 38321389 - 38321335
Alignment:
| Q |
1072 |
tcaagaaccgctcc--atgcaagagcaacactatactcat-ccaatatttctcaa |
1123 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
38321389 |
tcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaa |
38321335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 38322447 - 38322394
Alignment:
| Q |
15 |
catggaattaaatactaatttcatccaacatttagaaagtaaacaaatacacata |
69 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
38322447 |
catggaattacatactaacttcatccaaca-ttaaaaagtaaacaaatccacata |
38322394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 458 - 803
Target Start/End: Original strand, 38849411 - 38849756
Alignment:
| Q |
458 |
aaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatgagcccatgcaaaac |
557 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
38849411 |
aaaattgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaat |
38849510 |
T |
|
| Q |
558 |
tcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactcttccaccactgta |
657 |
Q |
| |
|
||| |||| ||||| || | || |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
38849511 |
tcagaatcagaagctacagcggcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccaccattgta |
38849610 |
T |
|
| Q |
658 |
atacatccatatcttcatcacaacgaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtg |
757 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||| || ||||||| |||||||||| |||||||| |
|
|
| T |
38849611 |
atacatccatttctgcataacaacgaaaatccaaaactgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtg |
38849710 |
T |
|
| Q |
758 |
cactttcaattcctattatatttcacacgtgaaaagggaagcaatg |
803 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| || ||||| |
|
|
| T |
38849711 |
cactttcaattcctattacatttcacaagtgaaaaggaaaccaatg |
38849756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 38849094 - 38849184
Alignment:
| Q |
148 |
aaccatatatagttctaattttacaatccataaagccaaaagacacattataaaccaaagttaaatagatacaagcaaatcaatcatcatc |
238 |
Q |
| |
|
||||| |||||||| ||||||| || ||||||| |||||| | |||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38849094 |
aaccaaatatagttttaattttttaaaccataaatccaaaataaacatgataaaccaaagttaaataaatacaagcaaatcaatcatcatc |
38849184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 860 - 930
Target Start/End: Original strand, 38849817 - 38849887
Alignment:
| Q |
860 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctg |
930 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
38849817 |
cttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctg |
38849887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1072 - 1123
Target Start/End: Original strand, 38850051 - 38850105
Alignment:
| Q |
1072 |
tcaagaaccgctcc--atgcaagagcaacactatactcat-ccaatatttctcaa |
1123 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
38850051 |
tcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaa |
38850105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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