View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4375-Insertion-10 (Length: 751)
Name: NF4375-Insertion-10
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-10 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 233 - 751
Target Start/End: Complemental strand, 35889346 - 35888828
Alignment:
| Q |
233 |
gatccataagcattgtgtgtactcttagaccaatgaagcagacaagcaattcaagcaagtcattctatttcttgcattctaaatcatcaagatacaagca |
332 |
Q |
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| T |
35889346 |
gatccataagcattgtgtgtactcttagaccaatgaagcagacaagcaattcaagcgagtcattctatttcttgcattctaaatcatcaagatacaagca |
35889247 |
T |
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| Q |
333 |
tcatgtgtactaactttcttgcccaaaacaagcttacaaactttaaaaaattttgcagtgtaataattttgcaatgtaaatctaccgcaccaaaattgaa |
432 |
Q |
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| T |
35889246 |
tcatgtgtactaactttcttgcccaaaacaagcttacaaactttaaaaaaatttgcagtgtaataattttgcaatgtaaatctaccgcaccaaaattgaa |
35889147 |
T |
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| Q |
433 |
attttaaacgtaattatttctctacagtcaaatttagtaaaagagaaaatccaaaattataacgcacacaaattgataacgaatttttcccaaacagatc |
532 |
Q |
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| T |
35889146 |
attttaaacgtaattatttctctacagtcaaatttagtaaaagagaaaatccaaaattataacgcacacaaattgataatgaatttttcccaaacagatc |
35889047 |
T |
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| Q |
533 |
ctaaggtttgcacagtatgttttccaagtttataactaacaataaaattgcacggatttggatgctctacagagtcgacaccatcctctctacactttta |
632 |
Q |
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| T |
35889046 |
ctaaggtttgcacagtatgttttccaagtttataactaacaataaaattgcacggatttggatgctctacagagtcgacaccatcctctctacactttta |
35888947 |
T |
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| Q |
633 |
gttacattcagtttcagtgaatttgtgtgtgaattagtgattaggattattttttatattatagtagtagcaataagaatgagcaaatcaagatcaacta |
732 |
Q |
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| T |
35888946 |
gttacattcagtttcagtgaatttgtgtgtgaattagtgattaggattattttttatattatagtagtagcaataagaatgagcaaatcaagatcaacta |
35888847 |
T |
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| Q |
733 |
tttctagtttttctcaact |
751 |
Q |
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| T |
35888846 |
tttctagtttttctcaact |
35888828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 35889572 - 35889411
Alignment:
| Q |
7 |
acacagtgaattatatttatagtacataacaagagacccttagctagctaagaaggaattatgtaactaactggttataactaacttcttctaactaatc |
106 |
Q |
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| T |
35889572 |
acacagtgaattatatttatagtacataacaagagacccttagctagctaagaaggaattatgtaactaactggttataactaacttcttctaactaatc |
35889473 |
T |
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| Q |
107 |
aactaccataactgaaaagttccaacaaatcaataactgttaaccatttcaaaattctttaa |
168 |
Q |
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| T |
35889472 |
aactaccataactgaaaagttccaacaaatcaataactgttaaccatttcaaaattctttaa |
35889411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 35887173 - 35887095
Alignment:
| Q |
78 |
tggttataactaacttcttctaactaatcaactaccataactgaaaagttccaacaaatcaataactgttaaccatttc |
156 |
Q |
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| T |
35887173 |
tggttataactaactgcttctaactaatcaaataccataactgaaaagttccaactgatcaataattgataaccatttc |
35887095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 34989209 - 34989171
Alignment:
| Q |
54 |
ctaagaaggaattatgtaactaactggttataactaact |
92 |
Q |
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| T |
34989209 |
ctaagaaggaattatgtaactaactggttataactaact |
34989171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 35887248 - 35887208
Alignment:
| Q |
48 |
agctagctaagaaggaattatgtaactaactggttataact |
88 |
Q |
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| T |
35887248 |
agctagctaagaaggaactatgtaactaactggttgtaact |
35887208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 35530260 - 35530318
Alignment:
| Q |
110 |
taccataactgaaaagttccaacaaatcaataactgttaaccatttcaaaattctttaa |
168 |
Q |
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| T |
35530260 |
taccataacagaaaactaccaactaatcaatagctgttaaccatttaaaaatcctttaa |
35530318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 35543698 - 35543756
Alignment:
| Q |
110 |
taccataactgaaaagttccaacaaatcaataactgttaaccatttcaaaattctttaa |
168 |
Q |
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| T |
35543698 |
taccataacagaaaactaccaactaatcaatagctgttaaccatttaaaaatcctttaa |
35543756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 35561440 - 35561498
Alignment:
| Q |
110 |
taccataactgaaaagttccaacaaatcaataactgttaaccatttcaaaattctttaa |
168 |
Q |
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| T |
35561440 |
taccataacagaaaactaccaactaatcaatagctgttaaccatttaaaaatcctttaa |
35561498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 35554795 - 35554852
Alignment:
| Q |
107 |
aactaccataactgaaaagttccaacaaatcaataactgttaaccatttcaaaattct |
164 |
Q |
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||||| |||||||||||||||| ||| |||||||| ||||||| |||| |||||||| |
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| T |
35554795 |
aactaacataactgaaaagttctaactgatcaataaatgttaacaatttgaaaattct |
35554852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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