View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4375-Insertion-11 (Length: 697)
Name: NF4375-Insertion-11
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-11 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 7324059 - 7324198
Alignment:
| Q |
8 |
tagaattcaaaagaaattattaaaacgaattgttttttgaccaaaatttactaaaactttagctagaaacctgcagattcaagtaatttgtatttgacca |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7324059 |
tagaattcaaaataaattattaaaacgaattgttttttgaccaaaatttactaaaactttagttagaaacctgcagattcaagtaatttgtatttgacca |
7324158 |
T |
|
| Q |
108 |
tactgcacaaatcaaaatctccaattagaaaatccaaaaa |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7324159 |
tactgcacaaatcaaaatctccaattagaaaatccaaaaa |
7324198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 7353044 - 7353097
Alignment:
| Q |
217 |
gcttcccaggccaactcaaaaccatggatgactcctcaccattcagcagcattt |
270 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
7353044 |
gcttcccaggccaactcaaaaccatgaatgactcttcaccattcagcagcattt |
7353097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 689
Target Start/End: Original strand, 7352808 - 7352859
Alignment:
| Q |
638 |
agaagccttctttgttcagtagttcacattcaattcaactaattaatccatt |
689 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
7352808 |
agaagcattctttgttcagttgttcagattcaattcaactaactaatccatt |
7352859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 685
Target Start/End: Original strand, 7353630 - 7353676
Alignment:
| Q |
638 |
agaagccttctttgttcagtagttcacattcaattcaactaattaatc |
685 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
7353630 |
agaagcattctttgttcagttgtt-acattcaattcaactaattaatc |
7353676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 612 - 689
Target Start/End: Original strand, 7365183 - 7365257
Alignment:
| Q |
612 |
caagaagacaatgtatgaggtcaaagagaagccttctttgttcagtagttcacattcaattcaactaattaatccatt |
689 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || ||| |||||| || ||||||||||||||||| ||| ||||| |
|
|
| T |
7365183 |
caagaagacaatgtatgaggtcaa--agaagcatt-ttttttcagttcttaacattcaattcaactaactaacccatt |
7365257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 7908972 - 7908898
Alignment:
| Q |
213 |
gcctgcttcccaggccaactcaaaaccatggatgactcctcaccattcagcagcatttgccgtaatgattccaat |
287 |
Q |
| |
|
||||||||| || |||||| ||||| ||| |||| ||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
7908972 |
gcctgcttcacataccaactaaaaactatgaatgattcctccccattcagcaaaatttgccataatgattccaat |
7908898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 7353248 - 7353285
Alignment:
| Q |
363 |
tagccttgcattcttcttggatctttccatttctaaat |
400 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
7353248 |
tagcctttcattcttcttggacctttccatttctaaat |
7353285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 679
Target Start/End: Original strand, 55202 - 55243
Alignment:
| Q |
638 |
agaagccttctttgttcagtagttcacattcaattcaactaa |
679 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55202 |
agaagcattctttgttcagttgttcacattcaattcaactaa |
55243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 679
Target Start/End: Complemental strand, 40917893 - 40917852
Alignment:
| Q |
638 |
agaagccttctttgttcagtagttcacattcaattcaactaa |
679 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40917893 |
agaagcattctttgttcagttgttcacattcaattcaactaa |
40917852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University