View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4375-Insertion-12 (Length: 464)

Name: NF4375-Insertion-12
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4375-Insertion-12
NF4375-Insertion-12
[»] chr6 (9 HSPs)
chr6 (201-464)||(11737089-11737352)
chr6 (217-457)||(11758558-11758798)
chr6 (217-455)||(12090628-12090866)
chr6 (11-202)||(11736874-11737061)
chr6 (294-461)||(11671437-11671604)
chr6 (218-457)||(11707729-11707968)
chr6 (294-457)||(11629526-11629689)
chr6 (294-457)||(11620723-11620886)
chr6 (294-457)||(11665566-11665729)
[»] scaffold0196 (1 HSPs)
scaffold0196 (296-457)||(15234-15395)
[»] scaffold0019 (1 HSPs)
scaffold0019 (296-457)||(6034-6195)
[»] chr8 (1 HSPs)
chr8 (218-457)||(16390918-16391157)
[»] chr1 (1 HSPs)
chr1 (256-419)||(44814044-44814207)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 201 - 464
Target Start/End: Original strand, 11737089 - 11737352
Alignment:
Q  201 ttgtttgaatgttaatgtctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11737089 ttgtttgaatgttaatgtctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccgcagaagcaagaacaactgcatacgctgtttct 11737188  T
Q  301 acccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11737189 acccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttctt 11737288  T
Q  401 cctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctatagatga 464  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11737289 cctcgaaagcccttattgtaatagctccagcaacactttcagctacatgattagctatagatga 11737352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 217 - 457
Target Start/End: Complemental strand, 11758798 - 11758558
Alignment:
Q  217 gtctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaacc 316  Q
    ||||||||||||| ||||||  | || ||||||||||||||  ||| |||  |||| |||||||||| |||||||||||||||||| |||||||||||||    
T  11758798 gtctcaccagatgataaagtgtctaatggaagcatagcaatagaaaatgctgcagaggcaagaacaattgcatacgctgtttctactcgttggatcaacc 11758699  T
Q  317 actcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttat 416  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  11758698 actcatttgaggaaaaactgtggaagaaagcactagcattgacatcaattaaatcaagattcttgttgaaaaaacggtcttcttcctcaaaagcccttat 11758599  T
Q  417 tgtaatagctccagcaatactttcagctacatgattagcta 457  Q
    ||| || ||||||||| || |||||||||||||||||||||    
T  11758598 tgtcattgctccagcagtagtttcagctacatgattagcta 11758558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 217 - 455
Target Start/End: Original strand, 12090628 - 12090866
Alignment:
Q  217 gtctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaacc 316  Q
    ||||||||||||| ||||||||| || ||||||||||| ||| | |||||  |||| ||||||||||| || ||||||||||||||||||||||||| ||    
T  12090628 gtctcaccagatgataaagtccctaatggaagcatagcgatggatagtgctgcagaggcaagaacaacggcgtacgctgtttctacccgttggatcagcc 12090727  T
Q  317 actcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttat 416  Q
    | |||||||| |||||||| |||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  12090728 attcatttgaggcaaaactatggaagaaagcagtagcattgacatcaattaaatcaagattcttgttgaaaaaccgatcttcttcctcaaaagctcttat 12090827  T
Q  417 tgtaatagctccagcaatactttcagctacatgattagc 455  Q
    ||| ||||||||||||| | |||||||||||||||||||    
T  12090828 tgtcatagctccagcaacagtttcagctacatgattagc 12090866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 11736874 - 11737061
Alignment:
Q  11 accataccgatgaatcctgaaaaggtgaaggttggaaataagaaacttgcataagagagataatcctattgtttgaagataaaatcatactgttttttgt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11736874 accataccgatgaatcctgaaaaggtgaaggttggaaataagaaacttgcataagagagataatcccattgtttgaagataaaatcatactgttttttgt 11736973  T
Q  111 accnnnnnnnngtcatattattttcatgatcatatatcaaccaatatacgttgtttgaatcctaaggtataaatatgtatttagtcaatgtt 202  Q
    |||        ||||||||||||||||||||||||||||| |    || ||||||| |||| ||||||||||||||||||||||||| ||||    
T  11736974 accaaaaaaaagtcatattattttcatgatcatatatcaaac----tatgttgttttaatcttaaggtataaatatgtatttagtcagtgtt 11737061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 294 - 461
Target Start/End: Original strand, 11671437 - 11671604
Alignment:
Q  294 tgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacga 393  Q
    |||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| | |||||||| |  ||| ||||| |  ||| || ||    
T  11671437 tgtttctaaccgttggatcaaccactcatttgaagcaaaactatggaaaaaagcactagcatttaaatcaattagacaaaggttcttctcaaaagaatga 11671536  T
Q  394 tcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagctataga 461  Q
     | || ||||  |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  11671537 gcctcctccttaaaagcccttattgtcatagctccagcaacagtttcagctacatgattagctataga 11671604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 457
Target Start/End: Original strand, 11707729 - 11707968
Alignment:
Q  218 tctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaacca 317  Q
    |||||||||| || ||||||||  | ||||| ||| | |||||||||||  |||| ||||||||| |||||     |||||||| |||||||||||||||    
T  11707729 tctcaccagaggtgaaagtccctgatggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcaccaattgtttctaaccgttggatcaacca 11707828  T
Q  318 ctcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttatt 417  Q
    ||| ||||| |||||| | || || || ||||| ||||| |  ||||||| || ||||||||| |  || ||||||||||| ||||| ||||||||||||    
T  11707829 ctcgtttgaggcaaaattatgaaaaaatgcactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagcccttatt 11707928  T
Q  418 gtaatagctccagcaatactttcagctacatgattagcta 457  Q
    || |  ||||| |||| | |||||||||||||||||||||    
T  11707929 gtcactgctccggcaacagtttcagctacatgattagcta 11707968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 294 - 457
Target Start/End: Original strand, 11629526 - 11629689
Alignment:
Q  294 tgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacga 393  Q
    |||||||| ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||   |||||||| || ||| ||||| |  ||| |||||    
T  11629526 tgtttctaaccgttggatcaaccactcattcgaggcaaaactatggaaaaaagcacttgcattattatcaattagatcaaggttcttctcaaaagaacga 11629625  T
Q  394 tcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagcta 457  Q
    ||||| ||||| |||||||| |||||   |||||| |||| | |||||||||||||||||||||    
T  11629626 tcttcctcctcaaaagccctaattgttgcagctccggcaacagtttcagctacatgattagcta 11629689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 457
Target Start/End: Complemental strand, 11620886 - 11620723
Alignment:
Q  294 tgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacga 393  Q
    ||||||||  |||||||||||||| || ||||| |||||||| || || |||||||| |||||   |||||||| || ||| ||||| |  ||| |||||    
T  11620886 tgtttctaatcgttggatcaaccattcgtttgaggcaaaactatgaaaaaaagcacttgcattattatcaattagatcaaggttcttctcaaaagaacga 11620787  T
Q  394 tcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagcta 457  Q
    |||||  |||| |||||||||||||| | ||||||||||| | |||| ||||||||||| ||||    
T  11620786 tcttccccctcaaaagcccttattgttacagctccagcaacagtttcggctacatgattcgcta 11620723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 457
Target Start/End: Complemental strand, 11665729 - 11665566
Alignment:
Q  294 tgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacga 393  Q
    |||||||| |||| ||||||||||||||||||| |||||| | || || || ||||| ||||| |  || |||| || ||||||||| |  ||||| |||    
T  11665729 tgtttctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcga 11665630  T
Q  394 tcttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagcta 457  Q
    ||||| ||||| ||||| |||||||| |  ||||| |||| | |||||||||||||||||||||    
T  11665629 tcttcctcctcaaaagctcttattgtcactgctccggcaacagtttcagctacatgattagcta 11665566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 296 - 457
Target Start/End: Complemental strand, 15395 - 15234
Alignment:
Q  296 tttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatc 395  Q
    |||||| |||||||||||||||||||||||| |||| | | ||||| |||| ||| ||||| |||||||||| || ||| ||||| |  ||| |||||||    
T  15395 tttctaaccgttggatcaaccactcatttgaggcaataatatggaaaaaagaactagcattaacatcaattagataaaggttcttctcaaaagaacgatc 15296  T
Q  396 ttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagcta 457  Q
    ||| ||||| ||||||||||||||   |||||| ||||   |||||||||||||||||||||    
T  15295 ttcatcctcaaaagcccttattgttgcagctcccgcaactgtttcagctacatgattagcta 15234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 457
Target Start/End: Original strand, 6034 - 6195
Alignment:
Q  296 tttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatc 395  Q
    |||||| |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||| | ||||||||  | ||| || || |  ||||||| |||    
T  6034 tttctaaccgttggatcaaccactcttttgaggaaaaactatggaaaaaagcactagcatttatatcaattaggtcaaggtttttctcaaaaaaacaatc 6133  T
Q  396 ttcttcctcgaaagcccttattgtaatagctccagcaatactttcagctacatgattagcta 457  Q
    ||| ||||| ||||||||||| ||   ||||||||||| | |||||  ||||||||||||||    
T  6134 ttcctcctcaaaagcccttatagttgcagctccagcaacagtttcatttacatgattagcta 6195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 457
Target Start/End: Original strand, 16390918 - 16391157
Alignment:
Q  218 tctcaccagatgttaaagtcccaaaaggaagcatagcaatgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaacca 317  Q
    |||||||||| || ||||||||    ||||| ||| | |||||||||||  |||| ||||||||| |||||     |||||||| |||||||||||||||    
T  16390918 tctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcacttattgtttctaaccgttggatcaacca 16391017  T
Q  318 ctcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttatt 417  Q
    ||| ||||| |||||| | || || || | ||| ||||| |  ||||||| || ||||||||| |  || ||||||||||| ||||| ||||  ||||||    
T  16391018 ctcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagttcttatt 16391117  T
Q  418 gtaatagctccagcaatactttcagctacatgattagcta 457  Q
    || |  ||||||| || | |||||||||||||||| ||||    
T  16391118 gtcactgctccagaaacagtttcagctacatgatttgcta 16391157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 419
Target Start/End: Complemental strand, 44814207 - 44814044
Alignment:
Q  256 atgcaaagtgccacagaagcaagaacaactgcatacgctgtttctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcat 355  Q
    |||||||||||  | || |||||||||||||||    ||||||||| |||||| |||||||||||||| |  |||||||| || ||||||| | | ||||    
T  44814207 atgcaaagtgcagctgatgcaagaacaactgcactaactgtttctaaccgttgaatcaaccactcattagcggcaaaactatgaaagaaaggagtagcat 44814108  T
Q  356 tgacatcaattaaattaagattcttgttgaaaaaacgatcttcttcctcgaaagcccttattgt 419  Q
    ||| ||||||||||  |||||||||    ||||||||| |||| |  || ||||||||||||||    
T  44814107 tgatatcaattaaaccaagattctttacaaaaaaacgaccttcctgttcaaaagcccttattgt 44814044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University