View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4375-Insertion-13 (Length: 369)
Name: NF4375-Insertion-13
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 38249675 - 38250036
Alignment:
| Q |
8 |
tatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatggtggaggaaatttgc |
107 |
Q |
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| T |
38249675 |
tatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatggtggaggaaatttgc |
38249774 |
T |
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| Q |
108 |
caacatagttgtggtttttaccctcgctttatctcctactcagatactcttcgtctgtgtcggactaatgctgaagttatgccttgctaggtaggaactt |
207 |
Q |
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| T |
38249775 |
caacatagttgtggtttttaccctcgctttatctcctactcagatactcttcgtttgtgtcggactaatgctgaagttatgccttgctaggtaggaactt |
38249874 |
T |
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| Q |
208 |
tggttgctgcatatataattggatgaagtccaaacattaattctgctattacatatgctgccgtgtttaatttgtagattattgttgagaactctagtat |
307 |
Q |
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| T |
38249875 |
tggttgctgcatatataattggatgaagtccaaacattaattctgctattacatatgctgccgtgtttaattcgtagattattgttgagaactctagtat |
38249974 |
T |
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| Q |
308 |
ctaatcttattctatcaaatttaagtcataagtagtttttagtgttggatttattatagtta |
369 |
Q |
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| T |
38249975 |
cttatcttattctatcaaatttaagtcataagtagtttttagtgttggatttattatagtta |
38250036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 363
Target Start/End: Original strand, 38255036 - 38255139
Alignment:
| Q |
255 |
attacatatgctgccgtgtttaatttgtagattattgttgagaactctagtatctaatcttattctatcaaatttaagtcataagtagtttttagtgttg |
354 |
Q |
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| T |
38255036 |
attaaatatgctgccatctttaatcggtagattattattgagaactgtagtatcttatttcatt-----aaatttaatgcataagtagtttttaattttg |
38255130 |
T |
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| Q |
355 |
gatttatta |
363 |
Q |
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| T |
38255131 |
gatttatta |
38255139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 224 - 365
Target Start/End: Original strand, 22177947 - 22178084
Alignment:
| Q |
224 |
aattggatgaagtccaaac-attaattctgctattacatatgctgccgtgtttaatttgtagattattgttgagaactctagtatctaatcttattctat |
322 |
Q |
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| T |
22177947 |
aattggatggagtccaaaccattacttttgcaatttcatatgctgccatgtttaattcgtagattattattgagaactgtagtatcttatttcatt---- |
22178042 |
T |
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| Q |
323 |
caaatttaagtcataagtagtttttagtgttggatttattata |
365 |
Q |
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| T |
22178043 |
-aaatttaatgcataaatagtttttaattttggatttattata |
22178084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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