View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4375-Insertion-14 (Length: 293)
Name: NF4375-Insertion-14
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-14 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 73 - 293
Target Start/End: Complemental strand, 17380309 - 17380089
Alignment:
| Q |
73 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
172 |
Q |
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| T |
17380309 |
taaattttctaaagattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
17380210 |
T |
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| Q |
173 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctatattttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatattc |
272 |
Q |
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| T |
17380209 |
tatgtcgtgattcgaaaatcagcttccaatggttcatagtctatattttaaatgatgttagatgagatgaaacacaatctagaacatgatatggatattc |
17380110 |
T |
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| Q |
273 |
ccaatgctctatgttgttgag |
293 |
Q |
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| T |
17380109 |
ccaatgctctaagttgttgag |
17380089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 285
Target Start/End: Complemental strand, 17392799 - 17392592
Alignment:
| Q |
73 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
172 |
Q |
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| T |
17392799 |
taaattttctaaaaattgagggctctccattggatttgggtga--agagtatgatgaatggtcataacttgtaaaagtc----tcgcattctgcaaaata |
17392706 |
T |
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| Q |
173 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctat-attttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatatt |
271 |
Q |
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| T |
17392705 |
tatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaacatgatctggatatt |
17392606 |
T |
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| Q |
272 |
cccaatgctctatg |
285 |
Q |
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| T |
17392605 |
cccaatgctctatg |
17392592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 285
Target Start/End: Complemental strand, 17384088 - 17383882
Alignment:
| Q |
73 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
172 |
Q |
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| T |
17384088 |
taaattttctaaaaattgagggctctccattggatttgggtga--agagtatggcaaatggtcat-atctgcaaaagtc----tcgcattctgcaaaata |
17383996 |
T |
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| Q |
173 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctat-attttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatatt |
271 |
Q |
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| T |
17383995 |
tatgttgcgaatcgaaaatcagcttcccaagcttcatagtgcataacttcaaattttgttagattagacgaaacacattctggaacatgatctggatatt |
17383896 |
T |
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| Q |
272 |
cccaatgctctatg |
285 |
Q |
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| T |
17383895 |
cccaatgctctatg |
17383882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 17377571 - 17377522
Alignment:
| Q |
228 |
tgttagatgagatgaaacacaatctagaacatgataaggatattcccaat |
277 |
Q |
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| T |
17377571 |
tgttagatgagacgaaacacattctggaacatgatctggatattcccaat |
17377522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 26052744 - 26052871
Alignment:
| Q |
159 |
cattctgcaaaatatatgtcttgatttgaaaatcagcttccaatggttcatagtctatatttt-aaatgctgttagatgagatgaaacacaatctagaac |
257 |
Q |
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| T |
26052744 |
cattctgcaaaatatatgttgcgaatcgaatatcagtttcacaagcttcatagtctataacttcaaattttgttagatgagatgaaacacattctggaac |
26052843 |
T |
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| Q |
258 |
atgataaggatattcccaatgctctatg |
285 |
Q |
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| T |
26052844 |
atgatctggatattcccaatgctctatg |
26052871 |
T |
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