View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4375-Insertion-16 (Length: 98)
Name: NF4375-Insertion-16
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-16 |
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| [»] chr8 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 7e-40; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 7e-40
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 31646712 - 31646622
Alignment:
| Q |
8 |
cattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatcaaaa |
98 |
Q |
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| T |
31646712 |
cattccaccaaggcacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaattgtatcatcaaaa |
31646622 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 31638008 - 31637918
Alignment:
| Q |
8 |
cattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatcaaaa |
98 |
Q |
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| T |
31638008 |
cattccaccaaggcacagagctaaaatttcccttagcagatggaaacactgtctcacccccttcttcaacatctgaactgtatcatcaaaa |
31637918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 31652223 - 31652137
Alignment:
| Q |
8 |
cattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatc |
94 |
Q |
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| T |
31652223 |
cattccaccaaggcacagagctaaaatttcccttggcatttggaaacaccgtctcacccccttcttcgacatctgaactgtatcatc |
31652137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 31630686 - 31630598
Alignment:
| Q |
8 |
cattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatcaa |
96 |
Q |
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| T |
31630686 |
cattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgtataatcaa |
31630598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 31657027 - 31656945
Alignment:
| Q |
8 |
cattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtat |
90 |
Q |
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| T |
31657027 |
cattccaccaaggcacagagctaaaatttcccttggcatttgggaacaccgtctcacccccttcttcaacatccgaactgtat |
31656945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 9104888 - 9104934
Alignment:
| Q |
52 |
aacactgtctcacccccttcttcaacatttgaactgtatcatcaaaa |
98 |
Q |
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| T |
9104888 |
aacactgtctcacccccttcttcaacatctgtactgtatcattaaaa |
9104934 |
T |
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