View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4375-Insertion-2 (Length: 1146)
Name: NF4375-Insertion-2
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 484 - 1046
Target Start/End: Complemental strand, 2004894 - 2004323
Alignment:
| Q |
484 |
atgtcaataaacttctcttgtaattgatctatctcatcaaagatttggtactgcttgcgagtatgtttgtagacggaatccataattatgatcatatata |
583 |
Q |
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| T |
2004894 |
atgtcaataaacttctcttgtaattgatctatctcatcaaagatttggtactgcttgcgagtatgtttgtagacggaatccataattatgatcatatata |
2004795 |
T |
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| Q |
584 |
cttatttggcgcattgaaagtgatttattgatcattcactctcattgtcagtttactcgtgcacacaccagctcttctagtggcaatgaagggt---tca |
680 |
Q |
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| T |
2004794 |
cttatttggcgcattgaaagtgatttattgatcattcactctcattgtgagtttactcgtgcacacactagctcttctagtggcaatgaaggatctttca |
2004695 |
T |
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| Q |
681 |
atcggtcagcttcaaattttaaaatgataaagtttgttggaaacacaaacttatcccctcgcacaaaaacatcatcagtccttctttctggctgctttta |
780 |
Q |
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| T |
2004694 |
atcggttaacttcaaattttaaaatgataaagtttgttggaaacacaaacttatccccttgcacaaaaacatcatcaatccttctttctggctgctttta |
2004595 |
T |
|
| Q |
781 |
tggatctgtctgcaagttcaaaatagtgggctttgcattttcaatctcaattgcttgaagattaatttagacattagatttatgttatctctaagtaaca |
880 |
Q |
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| T |
2004594 |
tggatctgtctacaagttcaaaatagtgggctttgcattttcaatctcaattgcttgaagattaatttagacattagatttatgttatctctaagtaaca |
2004495 |
T |
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| Q |
881 |
aagtttcccgatagtaaatttcatctatataacaagcaatggtgaagcttcttaggaactggtaaatacctaggcttgccttcaatgataggtcgtgatc |
980 |
Q |
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| T |
2004494 |
aagtttcccgatagtaaatttcatctatataacaagcaatggtgaagcttcttaggaactggtaaatacctaggcttgccttcaatgataggtcgtgatc |
2004395 |
T |
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| Q |
981 |
g-aca--cacctttgcgtacatcaaggatagagtttg--cgaaaatttact-gtagagcagtaaatgtttat |
1046 |
Q |
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| T |
2004394 |
gaacaacaacctttgcgtacatcaaggatagagtttgacagaaaattaactcgtggagcagtaaatgtttat |
2004323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 2005080 - 2004995
Alignment:
| Q |
299 |
tttgaacccctatctcgcatgttttataatctcaccaggactcacatatgatcgtttaaaacagctgatctggcttgctgagttgg |
384 |
Q |
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| T |
2005080 |
tttgaacccctatctcgcatgttttataatctgacgaggactgacatatgatcgtttaaaacagctgatctggcttgctgagttgg |
2004995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 2005243 - 2005173
Alignment:
| Q |
113 |
cagatatgaaagggtgcaaaattttacgtaggaagagaaaaggagtgggagtggggtgacgatctgagaaa |
183 |
Q |
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| T |
2005243 |
cagatatgaaagggtgcaaaattttacgtaggaagagaaaaggagtgggagtggggtggcgatctgagaaa |
2005173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 2005349 - 2005307
Alignment:
| Q |
7 |
agtttcaggaaaagcatgcaaaaatcttccaagtgtgattgct |
49 |
Q |
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| T |
2005349 |
agtttcaggaaaagcatgcaaaaatcttccaaatgtgattgct |
2005307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 2005161 - 2005118
Alignment:
| Q |
234 |
gaattactctgttactatatttagaagatttcaatcgtgtaaat |
277 |
Q |
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| T |
2005161 |
gaattactctattactatatttagaagatttcaatcgtgaaaat |
2005118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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