View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4375-Insertion-3 (Length: 1110)
Name: NF4375-Insertion-3
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 587; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 326 - 974
Target Start/End: Original strand, 33270144 - 33270794
Alignment:
| Q |
326 |
ttctttgattctaacaataccttttaatatgtaggtatctactgcagttgccgaaccttacaacagtgttctgtccactcattctcttcttgagcacact |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270144 |
ttctttgattctaacaataccttttaatatgtaggtatctactgcagttgttgaaccttacaacagtgttctgtccactcattctcttcttgagcacact |
33270243 |
T |
|
| Q |
426 |
gatgtggttgtacttttggacaatgaagcaatatatgatatatgcagaaaatcattagatatagaaaggccaacttataccaacttgaaccgtttgattt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33270244 |
gatgtggttgtacttttggacaatgaagcaatatatgatatatgcagaaaatcattagatatagaaaggccaacttataccaacctgaaccgtttgattt |
33270343 |
T |
|
| Q |
526 |
ctcaagttatctcttccttgacaacttccttgagatttgacggggcaatcaacgtggacgttactgagttccagactaacctggttccatatcctcgtat |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270344 |
ctcaagttatctcttccttgacaacttccttgagatttgacggtgcaatcaacgtggacgttactgagttccagactaacctggttccatatcctcgtat |
33270443 |
T |
|
| Q |
626 |
ccattttatgctttcgtcttatgcccctgtaatatcctctgcaaaggcctaccatgagcagatatcagttcctgagatcaccaacgcagtttttgagccg |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33270444 |
ccattttatgctttcgtcttatgcccctgtaatatcctctgcaaaggcctaccatgagcagatatcagttcctgagatcaccaatgcagtttttgagccg |
33270543 |
T |
|
| Q |
726 |
tcaagtatgacggctaagtgtgatcctagacacggaaagtacatggcatgctgtctcatgtatcgcggagatgttgtgcctaaagatgtaaatgcagctg |
825 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270544 |
tcaagtatgatggctaagtgtgaccctagacacggaaagtacatggcatgctgcctcatgtatcgcggagatgttgtgcctaaagatgtaaatgcagctg |
33270643 |
T |
|
| Q |
826 |
tttcaaatatcaaaacaaagagaacagttcagtttgttgactggtaattacacttagacttcctcgg-atatcacattgtgatttatgagtgataattca |
924 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| | |
|
|
| T |
33270644 |
tttcaaatatcaaaacaaagagaacagttcagtttgttgactggtaattacacttagacttccttggaatatcacattatgatttatgagtgataattta |
33270743 |
T |
|
| Q |
925 |
gattatgttccttgc-agttaagctacctagaatgatcaaagtgctgaaat |
974 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
33270744 |
gattatgttccttgcaagttaagctacctagaataatcaaagtgctgaaat |
33270794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 33269826 - 33269972
Alignment:
| Q |
8 |
gttttaccatctatccttctcctcaggtattaagaatgaagacaaaatggactatatgtgaagcatcaaatatttgttcctattttgctattttttacat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | |||||||||||||| |||||| |||| |||| ||||| |||||| |
|
|
| T |
33269826 |
gttttaccatctatccttctcctcaggtaataagaatgaagacaacatgaactgtttgtgaagcatcaaagatttgtacctactttgttatttgttacat |
33269925 |
T |
|
| Q |
108 |
tcttctttgaattagtggttttcttggttcatgttttatgcttttctt |
155 |
Q |
| |
|
||| || ||| ||| | |||||||| |||||| |||||||||||||| |
|
|
| T |
33269926 |
tctcctgtgatttattcgttttcttaattcatg-tttatgcttttctt |
33269972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 33270012 - 33270103
Alignment:
| Q |
170 |
tatggcaataataccagttaaacttttttgattctatgtgtctaagtcagactacactcgcttctatatataatagcatatagaataaatacaa |
263 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||| ||| || |||| ||||||||||||| |
|
|
| T |
33270012 |
tatggcagtaataccagttaaa--tttgtgattctatgtgtctagatcagactacactcgcctctatttattatcacatacagaataaatacaa |
33270103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 43784398 - 43784311
Alignment:
| Q |
199 |
gattctatgtgtctaagtcagactacactcgcttctatatataatagcatatagaataaatacaataaatactaactgatatgttttg |
286 |
Q |
| |
|
|||||| ||||||| | ||||||||||||| | ||||| |||||||||| |||| ||||| ||||||| |||| ||||||| |||| |
|
|
| T |
43784398 |
gattctgtgtgtctgaatcagactacactcacctctattgataatagcatgcagaagaaatagaataaatgctaattgatatggtttg |
43784311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 358 - 875
Target Start/End: Complemental strand, 10032431 - 10031914
Alignment:
| Q |
358 |
aggtatctactgcagttgccgaaccttacaacagtgttctgtccactcattctcttcttgagcacactgatgtggttgtacttttggacaatgaagcaat |
457 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||| |||||| |||| ||||||| ||||||| | |||||| ||| | |||||||||||||||||||| |
|
|
| T |
10032431 |
aggtgtctacagcagttgttgaaccttacaacactgttctttccaaccattctcacattgagcatagtgatgtagttattcttttggacaatgaagcaat |
10032332 |
T |
|
| Q |
458 |
atatgatatatgcagaaaatcattagatatagaaaggccaacttataccaacttgaaccgtttgatttctcaagttatctcttccttgacaacttccttg |
557 |
Q |
| |
|
||||| || ||||||| ||||||||| |||||||| ||||| || | ||||| || || || || || ||| ||| || || || |||||||| ||| |
|
|
| T |
10032331 |
ctatgacatttgcagaagatcattagacatagaaagaccaacgtacaataacttaaatcgcttaatatcgcaaagtatttcgtctttaacaacttcattg |
10032232 |
T |
|
| Q |
558 |
agatttgacggggcaatcaacgtggacgttactgagttccagactaacctggttccatatcctcgtatccattttatgctttcgtcttatgcccctgtaa |
657 |
Q |
| |
|
||||| ||||| ||||||||||||||| || | || ||||| |||||||| || || |||||||| |||||||| |||||||||||||| || ||||| | |
|
|
| T |
10032231 |
agattcgacggtgcaatcaacgtggacatttccgaattccaaactaaccttgtaccgtatcctcgaatccatttcatgctttcgtcttacgcgcctgtta |
10032132 |
T |
|
| Q |
658 |
tatcctctgcaaaggcctaccatgagcagatatcagttcctgagatcaccaacgcagtttttgagccgtcaagtatgacggctaagtgtgatcctagaca |
757 |
Q |
| |
|
|||| || | |||| ||| ||||| || |||| |||||||||||||| | || || ||||||||||| ||||||| || |||||||||||| ||||| |
|
|
| T |
10032131 |
tatcgtcagtgaaggtctatcatgaacaattatcggttcctgagatcactagagctgtgtttgagccgtcgagtatgatggttaagtgtgatccaagaca |
10032032 |
T |
|
| Q |
758 |
cggaaagtacatggcatgctgtctcatgtatcgcggagatgttgtgcctaaagatgtaaatgcagctgtttcaaatatcaaaacaaagagaacagttcag |
857 |
Q |
| |
|
||||||||||||||||| || | ||||||||||| ||| |||| || |||||||| |||| ||||||||| ||||||| | || |||||||||||| |
|
|
| T |
10032031 |
tggaaagtacatggcatgttgcttgatgtatcgcggcgatattgttccgaaagatgtcaatgttgctgtttcacatatcaagaaaatgagaacagttcaa |
10031932 |
T |
|
| Q |
858 |
tttgttgactggtaatta |
875 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10031931 |
tttgttgactggtaatta |
10031914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 357 - 872
Target Start/End: Complemental strand, 35669901 - 35669386
Alignment:
| Q |
357 |
taggtatctactgcagttgccgaaccttacaacagtgttctgtccactcattctcttcttgagcacactgatgtggttgtacttttggacaatgaagcaa |
456 |
Q |
| |
|
||||| || ||||| |||| ||||| |||||||||||||| || || ||||||||||| |||||||||||||||| || || ||||| || || || | |
|
|
| T |
35669901 |
taggtttcaactgctgttgtggaaccatacaacagtgttctatcgacacattctcttctcgagcacactgatgtggcggtgctcttggataacgaggcga |
35669802 |
T |
|
| Q |
457 |
tatatgatatatgcagaaaatcattagatatagaaaggccaacttataccaacttgaaccgtttgatttctcaagttatctcttccttgacaacttcctt |
556 |
Q |
| |
|
| || || || || || | ||| | ||||| || |||||||||||||||||||||||| | ||||| || || | || || ||| | ||||| || || |
|
|
| T |
35669801 |
tctacgacatttgtaggagatctcttgatattgagaggccaacttataccaacttgaacaggttgatatcacagatcatatcatccctcacaacctcgtt |
35669702 |
T |
|
| Q |
557 |
gagatttgacggggcaatcaacgtggacgttactgagttccagactaacctggttccatatcctcgtatccattttatgctttcgtcttatgcccctgta |
656 |
Q |
| |
|
||| ||||| || || || || || || |||||||||||||||| || || || || ||||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
35669701 |
gaggtttgatggtgctattaatgttgatattactgagttccagaccaatcttgtgccgtatcctcgtattcatttcatgctttcgtcttatgcacctgtt |
35669602 |
T |
|
| Q |
657 |
atatcctctgcaaaggcctaccatgagcagatatcagttcctgagatcaccaacgcagtttttgagccgtcaagtatgacggctaagtgtgatcctagac |
756 |
Q |
| |
|
|| || |||| ||||| |||||||||||| |||| || ||||| || ||||| || || |||||||| | ||||||| ||||||||||||||| || | |
|
|
| T |
35669601 |
atctctgctgctaaggcttaccatgagcagctatctgtgcctgaaattaccaatgctgtgtttgagcctgctagtatgatggctaagtgtgatccaaggc |
35669502 |
T |
|
| Q |
757 |
acggaaagtacatggcatgctgtctcatgtatcgcggagatgttgtgcctaaagatgtaaatgcagctgtttcaaatatcaaaacaaagagaacagttca |
856 |
Q |
| |
|
| || || || ||||| |||||| | ||||| || || |||||||| || || ||||| ||||| |||||| | |||||||||||||| || ||||| |
|
|
| T |
35669501 |
atgggaaatatatggcttgctgtttgatgtaccgtggtgatgttgttccaaaggatgtcaatgctgctgttggcaccatcaaaacaaagaggactgttca |
35669402 |
T |
|
| Q |
857 |
gtttgttgactggtaa |
872 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
35669401 |
gttcgttgactggtaa |
35669386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 550 - 838
Target Start/End: Complemental strand, 40377505 - 40377217
Alignment:
| Q |
550 |
cttccttgagatttgacggggcaatcaacgtggacgttactgagttccagactaacctggttccatatcctcgtatccattttatgctttcgtcttatgc |
649 |
Q |
| |
|
||||||||||||||||||| || | || || || |||||||| ||||||||||||||||| ||||||||| | || || || |||||||| |||||||| |
|
|
| T |
40377505 |
cttccttgagatttgacggtgccttgaatgttgatgttactgaattccagactaacctggtgccatatcctaggattcacttcatgctttcatcttatgc |
40377406 |
T |
|
| Q |
650 |
ccctgtaatatcctctgcaaaggcctaccatgagcagatatcagttcctgagatcaccaacgcagtttttgagccgtcaagtatgacggctaagtgtgat |
749 |
Q |
| |
|
||||| || || ||| || || |||||||| ||| |||||||| |||| ||||| ||| | |||||||| || ||||| ||| ||||||||| |
|
|
| T |
40377405 |
tcctgtgatttcagctgagaaagcataccatgaacagctatcagttgctgaaatcacaaacagcgcatttgagccatcgtctatgatggccaagtgtgat |
40377306 |
T |
|
| Q |
750 |
cctagacacggaaagtacatggcatgctgtctcatgtatcgcggagatgttgtgcctaaagatgtaaatgcagctgtttcaaatatcaa |
838 |
Q |
| |
|
|| | || || ||||||||||| || ||||| ||||| | || |||||||||||||||||||| |||||||||||| ||| |||||| |
|
|
| T |
40377305 |
ccacgccatggcaagtacatggcttgttgtcttatgtacagaggtgatgttgtgcctaaagatgttaatgcagctgttgcaactatcaa |
40377217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 28554914 - 28554976
Alignment:
| Q |
212 |
taagtcagactacactcgcttctatatataatagcatatagaataaatacaataaatactaac |
274 |
Q |
| |
|
||||||| |||||||| | |||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28554914 |
taagtcaaactacacttaccgctatttataatagcatatagaataaatataataaatactaac |
28554976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 22828121 - 22828066
Alignment:
| Q |
232 |
tctatatataatagcatatagaataaatacaataaatactaactgatatgttttgc |
287 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
22828121 |
tctatttataatagcatgtacaataaatacaataaatgctaattgatatgatttgc |
22828066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 540 - 826
Target Start/End: Complemental strand, 47928212 - 47927926
Alignment:
| Q |
540 |
tccttgacaacttccttgagatttgacggggcaatcaacgtggacgttactgagttccagactaacctggttccatatcctcgtatccattttatgcttt |
639 |
Q |
| |
|
|||||||| |||||||||| ||||| || || |||| || || || ||||| |||||||| ||| |||| |||||||| | |||||||| ||||||| |
|
|
| T |
47928212 |
tccttgactgcttccttgaggtttgatggtgctctcaatgttgatgtgactgaattccagaccaacttggtcccatatcccagaatccatttcatgcttt |
47928113 |
T |
|
| Q |
640 |
cgtcttatgcccctgtaatatcctctgcaaaggcctaccatgagcagatatcagttcctgagatcaccaacgcagtttttgagccgtcaagtatgacggc |
739 |
Q |
| |
|
| || ||||| || || || || ||| ||||| || ||||||||| | |||||| |||| || |||||| | ||||||||| ||| ||||| ||| |
|
|
| T |
47928112 |
cttcatatgctccagttatctctgctgagaaggcttatcatgagcagctttcagttgctgaaattaccaacagtgcttttgagccatcatctatgatggc |
47928013 |
T |
|
| Q |
740 |
taagtgtgatcctagacacggaaagtacatggcatgctgtctcatgtatcgcggagatgttgtgcctaaagatgtaaatgcagctgt |
826 |
Q |
| |
|
||||||||| ||| | || |||||||||||||| |||||| | ||||| || || |||||||| || || ||||| ||||| ||||| |
|
|
| T |
47928012 |
taagtgtgaccctcgccatggaaagtacatggcttgctgtttgatgtaccgtggtgatgttgttcccaaggatgtgaatgctgctgt |
47927926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 607 - 870
Target Start/End: Complemental strand, 51752015 - 51751752
Alignment:
| Q |
607 |
tggttccatatcctcgtatccattttatgctttcgtcttatgcccctgtaatatcctctgcaaaggcctaccatgagcagatatcagttcctgagatcac |
706 |
Q |
| |
|
||||||| || ||| | |||||||| |||||||| || ||||| ||||| || || ||| ||||| |||||||||||| | || ||| |||||||||| |
|
|
| T |
51752015 |
tggttccttaccctaggatccatttcatgctttcctcatatgcacctgttatctctgctgagaaggcttaccatgagcagctttctgttgctgagatcac |
51751916 |
T |
|
| Q |
707 |
caacgcagtttttgagccgtcaagtatgacggctaagtgtgatcctagacacggaaagtacatggcatgctgtctcatgtatcgcggagatgttgtgcct |
806 |
Q |
| |
|
|||| | |||||| || || |||| |||||||||||| ||| | || ||||| |||||||| || ||| | ||||| || || |||||||| ||| |
|
|
| T |
51751915 |
caacagtgcttttgaaccttcttccatgatggctaagtgtgaccctcgccatggaaaatacatggcttgttgtttgatgtaccgtggtgatgttgtacct |
51751816 |
T |
|
| Q |
807 |
aaagatgtaaatgcagctgtttcaaatatcaaaacaaagagaacagttcagtttgttgactggt |
870 |
Q |
| |
|
|| ||||| ||||| |||||| ||| ||||| || ||||| || ||||||||||||| |||| |
|
|
| T |
51751815 |
aaggatgtgaatgctgctgttgcaaccatcaagaccaagaggaccattcagtttgttgattggt |
51751752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 44130371 - 44130455
Alignment:
| Q |
253 |
aataaatacaataaatactaactgatatgttttgctcattcttatcataccaataattattattaggatttgattctttgattctaac |
340 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||| || |||| ||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44130371 |
aataaacacaataaatactaattgatatgattttctaattccaatc---ctaataattattattaggatttgattctttgattctaac |
44130455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 716 - 826
Target Start/End: Original strand, 28713606 - 28713716
Alignment:
| Q |
716 |
ttttgagccgtcaagtatgacggctaagtgtgatcctagacacggaaagtacatggcatgctgtctcatgtatcgcggagatgttgtgcctaaagatgta |
815 |
Q |
| |
|
||||||||| ||| ||||| || ||||||||| ||| | || |||||||||||||| |||||| | ||||| || || |||||||| || || ||||| |
|
|
| T |
28713606 |
ttttgagccatcatctatgatggttaagtgtgaccctcgccatggaaagtacatggcttgctgtttgatgtaccgtggtgatgttgttcccaaggatgtg |
28713705 |
T |
|
| Q |
816 |
aatgcagctgt |
826 |
Q |
| |
|
||||| ||||| |
|
|
| T |
28713706 |
aatgctgctgt |
28713716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 626260 - 626207
Alignment:
| Q |
240 |
taatagcatatagaataaatacaataaatactaactgatatgttttgctcattc |
293 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||||||||||| |||||| |||| |
|
|
| T |
626260 |
taatagcagttagaataaatacactaaatgctaactgatatgatttgctaattc |
626207 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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